HEADER DNA BINDING PROTEIN/DNA 17-JUN-24 9CAU TITLE DELTAARP8 INO80 BOUND TO S.C 0/40 NUCLEOSOME, NUCLEOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H4; COMPND 7 CHAIN: B, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H2A.1; COMPND 11 CHAIN: C, G; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HISTONE H2B.1; COMPND 15 CHAIN: D, H; COMPND 16 SYNONYM: SUPPRESSOR OF TY PROTEIN 12; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: DNA (227-MER); COMPND 20 CHAIN: I; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 6; COMPND 23 MOLECULE: DNA (227-MER); COMPND 24 CHAIN: J; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HHT1, YBR010W, YBR0201, HHT2, SIN2, YNL031C, N2749; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 10 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 11 ORGANISM_TAXID: 8355; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 16 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 17 ORGANISM_TAXID: 4932; SOURCE 18 GENE: HTA1, H2A1, SPT11, YDR225W, YD9934.10; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 23 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 24 ORGANISM_TAXID: 4932; SOURCE 25 GENE: HTB1, H2B1, SPT12, YDR224C, YD9934.09C; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 MOL_ID: 5; SOURCE 29 SYNTHETIC: YES; SOURCE 30 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 31 ORGANISM_TAXID: 32630; SOURCE 32 MOL_ID: 6; SOURCE 33 SYNTHETIC: YES; SOURCE 34 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 35 ORGANISM_TAXID: 32630 KEYWDS CHROMATIN REMODELER, NUCLEOSOME, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR H.WU,U.KAUR,G.J.NARLIKAR,Y.F.CHENG REVDAT 2 30-JUL-25 9CAU 1 JRNL REVDAT 1 16-JUL-25 9CAU 0 JRNL AUTH U.KAUR,H.WU,Y.CHENG,G.J.NARLIKAR JRNL TITL AUTOINHIBITION IMPOSED BY A LARGE CONFORMATIONAL SWITCH OF JRNL TITL 2 INO80 REGULATES NUCLEOSOME POSITIONING. JRNL REF SCIENCE V. 389 R3831 2025 JRNL REFN ESSN 1095-9203 JRNL PMID 40674492 JRNL DOI 10.1126/SCIENCE.ADR3831 REMARK 2 REMARK 2 RESOLUTION. 4.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.180 REMARK 3 NUMBER OF PARTICLES : 36091 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9CAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285124. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : CELL REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DELTAARP8 INO80 BOUND TO S.C REMARK 245 0/40 NUCLEOSOME, NUCLEOSOME; REMARK 245 HISTONE PROTEINS; HISTONE REMARK 245 PROTEINS H2A, H2B, AND H3; REMARK 245 HISTONE H4; DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4770.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 SER A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 SER A 135 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 GLY B 10 REMARK 465 LEU B 11 REMARK 465 GLY B 12 REMARK 465 LYS B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 LYS B 17 REMARK 465 ARG B 18 REMARK 465 HIS B 19 REMARK 465 ARG B 20 REMARK 465 LYS B 21 REMARK 465 VAL B 22 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 GLY C 3 REMARK 465 LYS C 4 REMARK 465 GLY C 5 REMARK 465 GLY C 6 REMARK 465 LYS C 7 REMARK 465 ALA C 8 REMARK 465 GLY C 9 REMARK 465 SER C 10 REMARK 465 ALA C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 ALA C 14 REMARK 465 SER C 15 REMARK 465 ALA C 122 REMARK 465 LYS C 123 REMARK 465 ALA C 124 REMARK 465 THR C 125 REMARK 465 LYS C 126 REMARK 465 ALA C 127 REMARK 465 SER C 128 REMARK 465 GLN C 129 REMARK 465 GLU C 130 REMARK 465 LEU C 131 REMARK 465 MET D 0 REMARK 465 SER D 1 REMARK 465 ALA D 2 REMARK 465 LYS D 3 REMARK 465 ALA D 4 REMARK 465 GLU D 5 REMARK 465 LYS D 6 REMARK 465 LYS D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 SER D 10 REMARK 465 LYS D 11 REMARK 465 ALA D 12 REMARK 465 PRO D 13 REMARK 465 ALA D 14 REMARK 465 GLU D 15 REMARK 465 LYS D 16 REMARK 465 LYS D 17 REMARK 465 PRO D 18 REMARK 465 ALA D 19 REMARK 465 ALA D 20 REMARK 465 LYS D 21 REMARK 465 LYS D 22 REMARK 465 THR D 23 REMARK 465 SER D 24 REMARK 465 THR D 25 REMARK 465 SER D 26 REMARK 465 THR D 27 REMARK 465 ASP D 28 REMARK 465 GLY D 29 REMARK 465 LYS D 30 REMARK 465 LYS D 31 REMARK 465 ARG D 32 REMARK 465 SER D 33 REMARK 465 LYS D 34 REMARK 465 ALA D 35 REMARK 465 GLN D 129 REMARK 465 ALA D 130 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 SER E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 SER E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 SER E 135 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 GLY F 3 REMARK 465 ARG F 4 REMARK 465 GLY F 5 REMARK 465 LYS F 6 REMARK 465 GLY F 7 REMARK 465 GLY F 8 REMARK 465 LYS F 9 REMARK 465 GLY F 10 REMARK 465 LEU F 11 REMARK 465 GLY F 12 REMARK 465 LYS F 13 REMARK 465 GLY F 14 REMARK 465 GLY F 15 REMARK 465 ALA F 16 REMARK 465 LYS F 17 REMARK 465 ARG F 18 REMARK 465 HIS F 19 REMARK 465 ARG F 20 REMARK 465 LYS F 21 REMARK 465 VAL F 22 REMARK 465 LEU F 23 REMARK 465 ARG F 24 REMARK 465 MET G 0 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 GLY G 3 REMARK 465 LYS G 4 REMARK 465 GLY G 5 REMARK 465 GLY G 6 REMARK 465 LYS G 7 REMARK 465 ALA G 8 REMARK 465 GLY G 9 REMARK 465 SER G 10 REMARK 465 ALA G 11 REMARK 465 ALA G 12 REMARK 465 SER G 121 REMARK 465 ALA G 122 REMARK 465 LYS G 123 REMARK 465 ALA G 124 REMARK 465 THR G 125 REMARK 465 LYS G 126 REMARK 465 ALA G 127 REMARK 465 SER G 128 REMARK 465 GLN G 129 REMARK 465 GLU G 130 REMARK 465 LEU G 131 REMARK 465 MET H 0 REMARK 465 SER H 1 REMARK 465 ALA H 2 REMARK 465 LYS H 3 REMARK 465 ALA H 4 REMARK 465 GLU H 5 REMARK 465 LYS H 6 REMARK 465 LYS H 7 REMARK 465 PRO H 8 REMARK 465 ALA H 9 REMARK 465 SER H 10 REMARK 465 LYS H 11 REMARK 465 ALA H 12 REMARK 465 PRO H 13 REMARK 465 ALA H 14 REMARK 465 GLU H 15 REMARK 465 LYS H 16 REMARK 465 LYS H 17 REMARK 465 PRO H 18 REMARK 465 ALA H 19 REMARK 465 ALA H 20 REMARK 465 LYS H 21 REMARK 465 LYS H 22 REMARK 465 THR H 23 REMARK 465 SER H 24 REMARK 465 THR H 25 REMARK 465 SER H 26 REMARK 465 THR H 27 REMARK 465 ASP H 28 REMARK 465 GLY H 29 REMARK 465 LYS H 30 REMARK 465 LYS H 31 REMARK 465 ARG H 32 REMARK 465 SER H 33 REMARK 465 LYS H 34 REMARK 465 ALA H 35 REMARK 465 GLN H 129 REMARK 465 ALA H 130 REMARK 465 DT I -153 REMARK 465 DC I -152 REMARK 465 DG I -151 REMARK 465 DG I -150 REMARK 465 DT I -149 REMARK 465 DA I -148 REMARK 465 DC I -147 REMARK 465 DC I -146 REMARK 465 DC I -145 REMARK 465 DG I -144 REMARK 465 DG I -143 REMARK 465 DG I -142 REMARK 465 DG I -141 REMARK 465 DA I -140 REMARK 465 DT I -139 REMARK 465 DC I -138 REMARK 465 DC I -137 REMARK 465 DT I -136 REMARK 465 DC I -135 REMARK 465 DT I -134 REMARK 465 DA I -133 REMARK 465 DG I -132 REMARK 465 DA I -131 REMARK 465 DG I -130 REMARK 465 DT I -129 REMARK 465 DG I -128 REMARK 465 DG I -127 REMARK 465 DG I -126 REMARK 465 DA I -125 REMARK 465 DG I -124 REMARK 465 DC I -123 REMARK 465 DT I -122 REMARK 465 DC I -121 REMARK 465 DG I -120 REMARK 465 DG I -119 REMARK 465 DA I -118 REMARK 465 DA I -117 REMARK 465 DC I -116 REMARK 465 DA I -115 REMARK 465 DC I -114 REMARK 465 DT I -113 REMARK 465 DA I -112 REMARK 465 DT I -111 REMARK 465 DC I -110 REMARK 465 DC I -109 REMARK 465 DG I -108 REMARK 465 DA I -107 REMARK 465 DC I -106 REMARK 465 DT I -105 REMARK 465 DG I -104 REMARK 465 DG I -103 REMARK 465 DC I -102 REMARK 465 DA I -101 REMARK 465 DC I -100 REMARK 465 DC I -99 REMARK 465 DG I -98 REMARK 465 DG I -97 REMARK 465 DC I -96 REMARK 465 DA I -95 REMARK 465 DA I -94 REMARK 465 DG I -93 REMARK 465 DG I -92 REMARK 465 DT I -91 REMARK 465 DC I -90 REMARK 465 DG I -89 REMARK 465 DC I -88 REMARK 465 DT I -87 REMARK 465 DG I -86 REMARK 465 DT I -85 REMARK 465 DT I -84 REMARK 465 DC I -83 REMARK 465 DA I -82 REMARK 465 DA I -81 REMARK 465 DT I -80 REMARK 465 DA I -79 REMARK 465 DC I -78 REMARK 465 DA I -77 REMARK 465 DT I -76 REMARK 465 DC I 71 REMARK 465 DA I 72 REMARK 465 DG I 73 REMARK 465 DC J -73 REMARK 465 DT J -72 REMARK 465 DG J -71 REMARK 465 DA J 76 REMARK 465 DT J 77 REMARK 465 DG J 78 REMARK 465 DT J 79 REMARK 465 DA J 80 REMARK 465 DT J 81 REMARK 465 DT J 82 REMARK 465 DG J 83 REMARK 465 DA J 84 REMARK 465 DA J 85 REMARK 465 DC J 86 REMARK 465 DA J 87 REMARK 465 DG J 88 REMARK 465 DC J 89 REMARK 465 DG J 90 REMARK 465 DA J 91 REMARK 465 DC J 92 REMARK 465 DC J 93 REMARK 465 DT J 94 REMARK 465 DT J 95 REMARK 465 DG J 96 REMARK 465 DC J 97 REMARK 465 DC J 98 REMARK 465 DG J 99 REMARK 465 DG J 100 REMARK 465 DT J 101 REMARK 465 DG J 102 REMARK 465 DC J 103 REMARK 465 DC J 104 REMARK 465 DA J 105 REMARK 465 DG J 106 REMARK 465 DT J 107 REMARK 465 DC J 108 REMARK 465 DG J 109 REMARK 465 DG J 110 REMARK 465 DA J 111 REMARK 465 DT J 112 REMARK 465 DA J 113 REMARK 465 DG J 114 REMARK 465 DT J 115 REMARK 465 DG J 116 REMARK 465 DT J 117 REMARK 465 DT J 118 REMARK 465 DC J 119 REMARK 465 DC J 120 REMARK 465 DG J 121 REMARK 465 DA J 122 REMARK 465 DG J 123 REMARK 465 DC J 124 REMARK 465 DT J 125 REMARK 465 DC J 126 REMARK 465 DC J 127 REMARK 465 DC J 128 REMARK 465 DA J 129 REMARK 465 DC J 130 REMARK 465 DT J 131 REMARK 465 DC J 132 REMARK 465 DT J 133 REMARK 465 DA J 134 REMARK 465 DG J 135 REMARK 465 DA J 136 REMARK 465 DG J 137 REMARK 465 DG J 138 REMARK 465 DA J 139 REMARK 465 DT J 140 REMARK 465 DC J 141 REMARK 465 DC J 142 REMARK 465 DC J 143 REMARK 465 DC J 144 REMARK 465 DG J 145 REMARK 465 DG J 146 REMARK 465 DG J 147 REMARK 465 DT J 148 REMARK 465 DA J 149 REMARK 465 DC J 150 REMARK 465 DC J 151 REMARK 465 DG J 152 REMARK 465 DA J 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 38 CG CD1 CD2 REMARK 470 LEU F 38 CG CD1 CD2 REMARK 470 LYS F 92 CG CD CE NZ REMARK 470 ILE G 63 CG1 CG2 CD1 REMARK 470 ILE G 88 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 81 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU B 59 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU H 48 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 DT I -65 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT I -63 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC I -58 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA I -31 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT I -29 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC I -27 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG I -19 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG I 4 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG I 20 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT I 25 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA J -25 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC J 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC J 6 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT J 15 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC J 36 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT J 38 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA J 63 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 51.06 29.91 REMARK 500 LYS C 75 17.66 55.36 REMARK 500 LYS C 119 -162.02 58.67 REMARK 500 ASN D 87 30.88 -99.83 REMARK 500 PRO D 106 -167.63 -79.92 REMARK 500 GLU D 108 -0.50 58.40 REMARK 500 THR E 58 14.73 -141.15 REMARK 500 ASN G 39 52.12 37.10 REMARK 500 ASP H 54 54.57 -93.17 REMARK 500 SER H 127 51.11 -92.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45404 RELATED DB: EMDB REMARK 900 DELTAARP8 INO80 BOUND TO S.C 0/40 NUCLEOSOME, NUCLEOSOME DBREF 9CAU A 0 135 UNP P61830 H3_YEAST 1 136 DBREF 9CAU B 1 103 UNP P62799 H4_XENLA 1 103 DBREF 9CAU C 0 131 UNP P04911 H2A1_YEAST 1 132 DBREF 9CAU D 0 130 UNP P02293 H2B1_YEAST 1 131 DBREF 9CAU E 0 135 UNP P61830 H3_YEAST 1 136 DBREF 9CAU F 1 103 UNP P62799 H4_XENLA 1 103 DBREF 9CAU G 0 131 UNP P04911 H2A1_YEAST 1 132 DBREF 9CAU H 0 130 UNP P02293 H2B1_YEAST 1 131 DBREF 9CAU I -153 73 PDB 9CAU 9CAU -153 73 DBREF 9CAU J -73 153 PDB 9CAU 9CAU -73 153 SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA SER LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO SER THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR LYS PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG PHE GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA ILE GLY SEQRES 8 A 136 ALA LEU GLN GLU SER VAL GLU ALA TYR LEU VAL SER LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE GLN LYS LYS ASP ILE LYS LEU ALA ARG ARG SEQRES 11 A 136 LEU ARG GLY GLU ARG SER SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 132 MET SER GLY GLY LYS GLY GLY LYS ALA GLY SER ALA ALA SEQRES 2 C 132 LYS ALA SER GLN SER ARG SER ALA LYS ALA GLY LEU THR SEQRES 3 C 132 PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG ARG GLY SEQRES 4 C 132 ASN TYR ALA GLN ARG ILE GLY SER GLY ALA PRO VAL TYR SEQRES 5 C 132 LEU THR ALA VAL LEU GLU TYR LEU ALA ALA GLU ILE LEU SEQRES 6 C 132 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 7 C 132 ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN SEQRES 8 C 132 ASP ASP GLU LEU ASN LYS LEU LEU GLY ASN VAL THR ILE SEQRES 9 C 132 ALA GLN GLY GLY VAL LEU PRO ASN ILE HIS GLN ASN LEU SEQRES 10 C 132 LEU PRO LYS LYS SER ALA LYS ALA THR LYS ALA SER GLN SEQRES 11 C 132 GLU LEU SEQRES 1 D 131 MET SER ALA LYS ALA GLU LYS LYS PRO ALA SER LYS ALA SEQRES 2 D 131 PRO ALA GLU LYS LYS PRO ALA ALA LYS LYS THR SER THR SEQRES 3 D 131 SER THR ASP GLY LYS LYS ARG SER LYS ALA ARG LYS GLU SEQRES 4 D 131 THR TYR SER SER TYR ILE TYR LYS VAL LEU LYS GLN THR SEQRES 5 D 131 HIS PRO ASP THR GLY ILE SER GLN LYS SER MET SER ILE SEQRES 6 D 131 LEU ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 D 131 THR GLU ALA SER LYS LEU ALA ALA TYR ASN LYS LYS SER SEQRES 8 D 131 THR ILE SER ALA ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 D 131 ILE LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 D 131 GLY THR ARG ALA VAL THR LYS TYR SER SER SER THR GLN SEQRES 11 D 131 ALA SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA SER LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO SER THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR LYS PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG PHE GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA ILE GLY SEQRES 8 E 136 ALA LEU GLN GLU SER VAL GLU ALA TYR LEU VAL SER LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE GLN LYS LYS ASP ILE LYS LEU ALA ARG ARG SEQRES 11 E 136 LEU ARG GLY GLU ARG SER SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 132 MET SER GLY GLY LYS GLY GLY LYS ALA GLY SER ALA ALA SEQRES 2 G 132 LYS ALA SER GLN SER ARG SER ALA LYS ALA GLY LEU THR SEQRES 3 G 132 PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG ARG GLY SEQRES 4 G 132 ASN TYR ALA GLN ARG ILE GLY SER GLY ALA PRO VAL TYR SEQRES 5 G 132 LEU THR ALA VAL LEU GLU TYR LEU ALA ALA GLU ILE LEU SEQRES 6 G 132 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 7 G 132 ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN SEQRES 8 G 132 ASP ASP GLU LEU ASN LYS LEU LEU GLY ASN VAL THR ILE SEQRES 9 G 132 ALA GLN GLY GLY VAL LEU PRO ASN ILE HIS GLN ASN LEU SEQRES 10 G 132 LEU PRO LYS LYS SER ALA LYS ALA THR LYS ALA SER GLN SEQRES 11 G 132 GLU LEU SEQRES 1 H 131 MET SER ALA LYS ALA GLU LYS LYS PRO ALA SER LYS ALA SEQRES 2 H 131 PRO ALA GLU LYS LYS PRO ALA ALA LYS LYS THR SER THR SEQRES 3 H 131 SER THR ASP GLY LYS LYS ARG SER LYS ALA ARG LYS GLU SEQRES 4 H 131 THR TYR SER SER TYR ILE TYR LYS VAL LEU LYS GLN THR SEQRES 5 H 131 HIS PRO ASP THR GLY ILE SER GLN LYS SER MET SER ILE SEQRES 6 H 131 LEU ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 H 131 THR GLU ALA SER LYS LEU ALA ALA TYR ASN LYS LYS SER SEQRES 8 H 131 THR ILE SER ALA ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 H 131 ILE LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 H 131 GLY THR ARG ALA VAL THR LYS TYR SER SER SER THR GLN SEQRES 11 H 131 ALA SEQRES 1 I 227 DT DC DG DG DT DA DC DC DC DG DG DG DG SEQRES 2 I 227 DA DT DC DC DT DC DT DA DG DA DG DT DG SEQRES 3 I 227 DG DG DA DG DC DT DC DG DG DA DA DC DA SEQRES 4 I 227 DC DT DA DT DC DC DG DA DC DT DG DG DC SEQRES 5 I 227 DA DC DC DG DG DC DA DA DG DG DT DC DG SEQRES 6 I 227 DC DT DG DT DT DC DA DA DT DA DC DA DT SEQRES 7 I 227 DG DC DA DC DA DG DG DA DT DG DT DA DT SEQRES 8 I 227 DA DT DA DT DC DT DG DA DC DA DC DG DT SEQRES 9 I 227 DG DC DC DT DG DG DA DG DA DC DT DA DG SEQRES 10 I 227 DG DG DA DG DT DA DA DT DC DC DC DC DT SEQRES 11 I 227 DT DG DG DC DG DG DT DT DA DA DA DA DC SEQRES 12 I 227 DG DC DG DG DG DG DG DA DC DA DG DC DG SEQRES 13 I 227 DC DG DT DA DC DG DT DG DC DG DT DT DT SEQRES 14 I 227 DA DA DG DC DG DG DT DG DC DT DA DG DA SEQRES 15 I 227 DG DC DT DG DT DC DT DA DC DG DA DC DC SEQRES 16 I 227 DA DA DT DT DG DA DG DC DG DG DC DC DT SEQRES 17 I 227 DC DG DG DC DA DC DC DG DG DG DA DT DT SEQRES 18 I 227 DC DT DC DC DA DG SEQRES 1 J 227 DC DT DG DG DA DG DA DA DT DC DC DC DG SEQRES 2 J 227 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 J 227 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 J 227 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 J 227 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 J 227 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 J 227 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 J 227 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 J 227 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 J 227 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 J 227 DA DG DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 J 227 DC DT DG DT DG DC DA DT DG DT DA DT DT SEQRES 13 J 227 DG DA DA DC DA DG DC DG DA DC DC DT DT SEQRES 14 J 227 DG DC DC DG DG DT DG DC DC DA DG DT DC SEQRES 15 J 227 DG DG DA DT DA DG DT DG DT DT DC DC DG SEQRES 16 J 227 DA DG DC DT DC DC DC DA DC DT DC DT DA SEQRES 17 J 227 DG DA DG DG DA DT DC DC DC DC DG DG DG SEQRES 18 J 227 DT DA DC DC DG DA HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 GLN A 76 1 14 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 GLN A 120 GLY A 132 1 13 HELIX 5 AA5 THR B 31 GLY B 43 1 13 HELIX 6 AA6 LEU B 50 ALA B 77 1 28 HELIX 7 AA7 THR B 83 GLN B 94 1 12 HELIX 8 AA8 SER C 17 ALA C 22 1 6 HELIX 9 AA9 PRO C 27 ARG C 37 1 11 HELIX 10 AB1 SER C 46 ASN C 74 1 29 HELIX 11 AB2 ILE C 80 ASP C 91 1 12 HELIX 12 AB3 ASP C 91 LEU C 98 1 8 HELIX 13 AB4 TYR D 40 HIS D 52 1 13 HELIX 14 AB5 SER D 58 ASN D 87 1 30 HELIX 15 AB6 SER D 93 LEU D 105 1 13 HELIX 16 AB7 ALA D 110 SER D 127 1 18 HELIX 17 AB8 THR E 45 SER E 57 1 13 HELIX 18 AB9 ARG E 63 GLN E 76 1 14 HELIX 19 AC1 GLN E 85 ALA E 114 1 30 HELIX 20 AC2 GLN E 120 GLY E 132 1 13 HELIX 21 AC3 THR F 31 GLY F 43 1 13 HELIX 22 AC4 LEU F 50 ALA F 77 1 28 HELIX 23 AC5 THR F 83 GLN F 94 1 12 HELIX 24 AC6 PRO G 27 ARG G 37 1 11 HELIX 25 AC7 SER G 46 ASN G 74 1 29 HELIX 26 AC8 ILE G 80 ASN G 90 1 11 HELIX 27 AC9 ASP G 91 LEU G 98 1 8 HELIX 28 AD1 TYR H 40 GLN H 50 1 11 HELIX 29 AD2 SER H 58 LYS H 88 1 31 HELIX 30 AD3 SER H 93 LEU H 105 1 13 HELIX 31 AD4 PRO H 106 SER H 126 1 21 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 81 VAL B 82 1 O VAL B 82 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 46 ILE B 47 1 O ARG B 46 N ILE A 119 SHEET 1 AA3 2 ARG C 43 ILE C 44 0 SHEET 2 AA3 2 THR D 91 ILE D 92 1 O ILE D 92 N ARG C 43 SHEET 1 AA4 2 ARG C 78 ILE C 79 0 SHEET 2 AA4 2 GLY D 56 ILE D 57 1 O GLY D 56 N ILE C 79 SHEET 1 AA5 2 THR E 118 ILE E 119 0 SHEET 2 AA5 2 ARG F 46 ILE F 47 1 O ARG F 46 N ILE E 119 SHEET 1 AA6 2 ARG G 43 ILE G 44 0 SHEET 2 AA6 2 THR H 91 ILE H 92 1 O ILE H 92 N ARG G 43 SHEET 1 AA7 2 ARG G 78 ILE G 79 0 SHEET 2 AA7 2 GLY H 56 ILE H 57 1 O GLY H 56 N ILE G 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 596 0 0 31 14 0 0 611949 10 0 118 END