HEADER DNA BINDING PROTEIN/DNA 18-JUN-24 9CAY TITLE TERNARY STRUCTURE OF PLASMODIUM FALCIPARUM APICOPLAST DNA POLYMERASE TITLE 2 (EXO-MINUS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*CP*AP*GP*CP*TP*CP*TP*AP*CP*GP*GP*AP*TP*GP*CP*CP*TP*CP*AP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: E; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PLASTID REPLICATION-REPAIR ENZYME; COMPND 9 CHAIN: A; COMPND 10 EC: 2.7.7.7; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*AP*TP*GP*TP*GP*AP*GP*GP*CP*AP*TP*CP*CP*GP*TP*AP*GP*(2DA))-3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 9 ORGANISM_TAXID: 36329; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS DNA POLYMERASE, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR C.-Y.LO,Y.GAO REVDAT 1 06-NOV-24 9CAY 0 JRNL AUTH C.-Y.LO,A.UNG,S.W.NELSON,Y.GAO JRNL TITL CRYO-EM STRUCTURES OF BINARY AND TERNARY COMPLEXES OF THE JRNL TITL 2 PLASMODIUM FALCIPARUM APICOPLAST DNA POLYMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.170 REMARK 3 NUMBER OF PARTICLES : 101542 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9CAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000283863. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PLASMODIUM FALCIPARUM REMARK 245 APICOPLAST DNA POLYMERASE REMARK 245 TERNARY COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4900.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG E 1 REMARK 465 DC E 2 REMARK 465 DA E 3 REMARK 465 DG E 4 REMARK 465 DT E 5 REMARK 465 DG E 27 REMARK 465 DC E 28 REMARK 465 DA E 29 REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 TYR A 7 REMARK 465 ILE A 8 REMARK 465 LYS A 9 REMARK 465 ASP A 10 REMARK 465 ASN A 11 REMARK 465 ILE A 12 REMARK 465 ILE A 13 REMARK 465 ASN A 14 REMARK 465 VAL A 15 REMARK 465 ASP A 16 REMARK 465 ASP A 17 REMARK 465 ASN A 18 REMARK 465 ILE A 19 REMARK 465 ILE A 20 REMARK 465 LYS A 21 REMARK 465 LYS A 22 REMARK 465 LYS A 23 REMARK 465 ASP A 24 REMARK 465 ILE A 25 REMARK 465 PHE A 26 REMARK 465 LYS A 27 REMARK 465 LEU A 28 REMARK 465 LYS A 29 REMARK 465 ASN A 30 REMARK 465 GLU A 31 REMARK 465 ASN A 32 REMARK 465 ASN A 33 REMARK 465 GLU A 34 REMARK 465 ILE A 35 REMARK 465 THR A 36 REMARK 465 GLU A 37 REMARK 465 CYS A 38 REMARK 465 ALA A 39 REMARK 465 PHE A 40 REMARK 465 GLU A 41 REMARK 465 TYR A 42 REMARK 465 PHE A 43 REMARK 465 GLU A 44 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 LYS A 47 REMARK 465 LYS A 48 REMARK 465 PHE A 49 REMARK 465 ASP A 50 REMARK 465 ASP A 51 REMARK 465 ASP A 52 REMARK 465 ILE A 53 REMARK 465 GLU A 54 REMARK 465 SER A 55 REMARK 465 ARG A 56 REMARK 465 LYS A 169 REMARK 465 ASN A 170 REMARK 465 LYS A 171 REMARK 465 ASN A 172 REMARK 465 MET A 173 REMARK 465 TYR A 174 REMARK 465 GLY A 175 REMARK 465 PHE A 176 REMARK 465 LYS A 177 REMARK 465 LEU A 178 REMARK 465 ASN A 179 REMARK 465 ASN A 180 REMARK 465 ILE A 181 REMARK 465 VAL A 182 REMARK 465 GLU A 183 REMARK 465 LYS A 184 REMARK 465 TYR A 185 REMARK 465 LEU A 186 REMARK 465 ASN A 187 REMARK 465 VAL A 188 REMARK 465 ILE A 189 REMARK 465 LEU A 190 REMARK 465 ASP A 191 REMARK 465 LYS A 192 REMARK 465 GLN A 193 REMARK 465 GLN A 194 REMARK 465 GLN A 195 REMARK 465 ASN A 196 REMARK 465 SER A 197 REMARK 465 VAL A 198 REMARK 465 TRP A 199 REMARK 465 ASN A 200 REMARK 465 ASN A 201 REMARK 465 SER A 202 REMARK 465 LEU A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 ASN A 206 REMARK 465 ASN A 207 REMARK 465 GLN A 208 REMARK 465 LEU A 209 REMARK 465 PHE A 210 REMARK 465 TYR A 211 REMARK 465 ALA A 212 REMARK 465 ALA A 213 REMARK 465 ARG A 214 REMARK 465 ASP A 215 REMARK 465 SER A 216 REMARK 465 SER A 217 REMARK 465 ASP A 628 REMARK 465 DT F 1 REMARK 465 DG F 2 REMARK 465 DA F 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 16 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 7 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA F 18 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 DG F 19 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 67 -4.54 72.77 REMARK 500 LYS A 117 -167.92 52.79 REMARK 500 ASP A 119 -7.06 79.11 REMARK 500 LEU A 166 53.55 -92.47 REMARK 500 GLU A 289 18.16 58.22 REMARK 500 ASN A 290 25.44 -141.03 REMARK 500 LYS A 305 47.72 -87.58 REMARK 500 ASN A 307 60.03 64.77 REMARK 500 PHE A 327 34.43 -97.19 REMARK 500 LEU A 328 -168.83 -75.61 REMARK 500 GLU A 331 47.25 -82.32 REMARK 500 PHE A 349 -50.68 -122.09 REMARK 500 LYS A 360 5.41 59.65 REMARK 500 PRO A 383 116.19 -38.47 REMARK 500 ASN A 403 -7.78 73.78 REMARK 500 LEU A 416 -6.76 73.76 REMARK 500 ASN A 435 61.28 60.95 REMARK 500 THR A 447 -165.71 179.33 REMARK 500 ASN A 450 153.74 69.57 REMARK 500 LEU A 522 -3.35 71.60 REMARK 500 HIS A 578 -26.34 66.89 REMARK 500 ASP A 579 -0.16 -155.05 REMARK 500 SER A 626 82.69 -69.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 382 PRO A 383 -149.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 410 OD1 REMARK 620 2 PHE A 411 O 60.1 REMARK 620 3 ASP A 579 OD2 113.8 110.7 REMARK 620 4 DGT A 702 O3G 95.7 73.4 148.4 REMARK 620 5 DGT A 702 O2B 140.3 81.5 87.5 61.6 REMARK 620 6 DGT A 702 O2A 124.2 137.8 104.5 64.4 77.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45407 RELATED DB: EMDB REMARK 900 TERNARY STRUCTURE OF PLASMODIUM FALCIPARUM APICOPLAST DNA REMARK 900 POLYMERASE (EXO-MINUS) DBREF 9CAY E 1 29 PDB 9CAY 9CAY 1 29 DBREF 9CAY A 1 628 UNP Q8ILY1 Q8ILY1_PLAF7 1389 2016 DBREF 9CAY F 1 20 PDB 9CAY 9CAY 1 20 SEQADV 9CAY ASN A 82 UNP Q8ILY1 ASP 1470 ENGINEERED MUTATION SEQADV 9CAY GLN A 84 UNP Q8ILY1 GLU 1472 ENGINEERED MUTATION SEQRES 1 E 29 DG DC DA DG DT DC DA DG DC DT DC DT DA SEQRES 2 E 29 DC DG DG DA DT DG DC DC DT DC DA DC DA SEQRES 3 E 29 DG DC DA SEQRES 1 A 628 ASP GLU ILE THR LYS LYS TYR ILE LYS ASP ASN ILE ILE SEQRES 2 A 628 ASN VAL ASP ASP ASN ILE ILE LYS LYS LYS ASP ILE PHE SEQRES 3 A 628 LYS LEU LYS ASN GLU ASN ASN GLU ILE THR GLU CYS ALA SEQRES 4 A 628 PHE GLU TYR PHE GLU SER LYS LYS LYS PHE ASP ASP ASP SEQRES 5 A 628 ILE GLU SER ARG PHE PHE ILE ILE ASN ASP ASN ASN TYR SEQRES 6 A 628 ASN GLU ASN ILE ASN LEU ILE TYR LYS ASP ILE LYS TYR SEQRES 7 A 628 CYS GLY LEU ASN ILE GLN THR THR GLY LEU GLU VAL PHE SEQRES 8 A 628 ASP GLU ASN ILE ARG LEU ILE GLN ILE ALA VAL GLU ASN SEQRES 9 A 628 TYR PRO VAL ILE ILE TYR ASP MET PHE ASN ILE ASN LYS SEQRES 10 A 628 LYS ASP ILE LEU ASP GLY LEU ARG LYS VAL LEU GLU ASN SEQRES 11 A 628 LYS ASN ILE ILE LYS ILE ILE GLN ASN GLY LYS PHE ASP SEQRES 12 A 628 ALA LYS PHE LEU LEU HIS ASN ASN PHE LYS ILE GLU ASN SEQRES 13 A 628 ILE PHE ASP THR TYR ILE ALA SER LYS LEU LEU ASP LYS SEQRES 14 A 628 ASN LYS ASN MET TYR GLY PHE LYS LEU ASN ASN ILE VAL SEQRES 15 A 628 GLU LYS TYR LEU ASN VAL ILE LEU ASP LYS GLN GLN GLN SEQRES 16 A 628 ASN SER VAL TRP ASN ASN SER LEU LEU ASN ASN ASN GLN SEQRES 17 A 628 LEU PHE TYR ALA ALA ARG ASP SER SER CYS LEU LEU LYS SEQRES 18 A 628 LEU TYR LYS LYS LEU LYS GLU GLU ILE LYS LYS GLU ASN SEQRES 19 A 628 LEU HIS ILE VAL ASN ASP ILE GLU ASN LYS CYS ILE LEU SEQRES 20 A 628 PRO ILE CYS ASP MET GLU LEU ASN GLY ILE LYS VAL ASP SEQRES 21 A 628 LEU GLU ASN LEU GLN LYS SER THR ASN GLU ILE LEU ASN SEQRES 22 A 628 GLU LEU ASN ILE GLU LYS ASP ASN LEU LYS LYS LYS LEU SEQRES 23 A 628 LYS ASP GLU ASN ILE ASN VAL ASN SER GLN GLN GLN VAL SEQRES 24 A 628 LEU LYS ALA LEU GLN LYS ASN ASN VAL ARG ASP ILE SER SEQRES 25 A 628 ASN LYS LEU ILE GLU ASN THR SER ASP SER ASN LEU LYS SEQRES 26 A 628 ASN PHE LEU ASN HIS GLU GLU ILE ILE SER LEU ARG ASN SEQRES 27 A 628 TYR ARG ARG LEU TYR LYS LEU TYR SER ALA PHE TYR LEU SEQRES 28 A 628 LYS LEU PRO LEU HIS ILE ASN THR LYS THR ASN LYS ILE SEQRES 29 A 628 HIS THR THR PHE ASN GLN LEU LYS THR PHE SER GLY ARG SEQRES 30 A 628 PHE SER SER GLU LYS PRO ASN LEU GLN GLN ILE PRO ARG SEQRES 31 A 628 GLN LYS ASN ILE ARG GLU ILE PHE ILE PRO ASN ASP ASN SEQRES 32 A 628 ASN ILE PHE ILE ILE ALA ASP PHE LYS GLN ILE GLU LEU SEQRES 33 A 628 LYS ILE ALA ALA GLU ILE THR ASN ASP GLU ILE MET LEU SEQRES 34 A 628 LYS ALA TYR ASN ASN ASN ILE ASP LEU HIS THR LEU THR SEQRES 35 A 628 ALA SER ILE ILE THR LYS LYS ASN ILE PRO ASP ILE ASN SEQRES 36 A 628 LYS GLU ASP ARG HIS ILE ALA LYS ALA ILE ASN PHE GLY SEQRES 37 A 628 LEU ILE TYR GLY MET ASN TYR VAL ASN LEU LYS ASN TYR SEQRES 38 A 628 ALA ASN THR TYR TYR GLY LEU ASN MET SER LEU ASP GLN SEQRES 39 A 628 CYS LEU TYR PHE TYR ASN SER PHE PHE GLU HIS TYR LYS SEQRES 40 A 628 GLY ILE TYR LYS TRP HIS ASN GLN VAL LYS GLN LYS ARG SEQRES 41 A 628 ALA LEU GLN TYR SER THR LEU SER ASN ARG LYS VAL ILE SEQRES 42 A 628 PHE PRO TYR PHE SER PHE THR LYS ALA LEU ASN TYR PRO SEQRES 43 A 628 VAL GLN GLY THR CYS ALA ASP ILE LEU LYS LEU ALA LEU SEQRES 44 A 628 VAL ASP LEU TYR ASP ASN LEU LYS ASP ILE ASN GLY LYS SEQRES 45 A 628 ILE ILE LEU CYS VAL HIS ASP GLU ILE ILE ILE GLU VAL SEQRES 46 A 628 ASN LYS LYS PHE GLN GLU GLU ALA LEU LYS ILE LEU VAL SEQRES 47 A 628 GLN SER MET GLU ASN SER ALA SER TYR PHE LEU LYS LYS SEQRES 48 A 628 VAL LYS CYS GLU VAL SER VAL LYS ILE ALA GLU ASN TRP SEQRES 49 A 628 GLY SER LYS ASP SEQRES 1 F 20 DT DG DA DT DG DT DG DA DG DG DC DA DT SEQRES 2 F 20 DC DC DG DT DA DG 2DA HET 2DA F 20 20 HET MG A 701 1 HET DGT A 702 31 HETNAM 2DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE FORMUL 3 2DA C10 H14 N5 O5 P FORMUL 4 MG MG 2+ FORMUL 5 DGT C10 H16 N5 O13 P3 HELIX 1 AA1 ASN A 68 LYS A 74 5 7 HELIX 2 AA2 ASP A 122 ASN A 130 1 9 HELIX 3 AA3 PHE A 142 ASN A 150 1 9 HELIX 4 AA4 THR A 160 LEU A 166 1 7 HELIX 5 AA5 LEU A 219 LYS A 232 1 14 HELIX 6 AA6 LEU A 235 GLY A 256 1 22 HELIX 7 AA7 ASP A 260 LYS A 287 1 28 HELIX 8 AA8 SER A 295 LYS A 305 1 11 HELIX 9 AA9 SER A 320 PHE A 327 1 8 HELIX 10 AB1 GLU A 332 ALA A 348 1 17 HELIX 11 AB2 LEU A 353 ILE A 357 5 5 HELIX 12 AB3 ASN A 384 ILE A 388 5 5 HELIX 13 AB4 GLN A 391 GLU A 396 1 6 HELIX 14 AB5 LYS A 417 ASN A 424 1 8 HELIX 15 AB6 ASP A 425 ASN A 434 1 10 HELIX 16 AB7 ASP A 437 ILE A 446 1 10 HELIX 17 AB8 ASN A 455 GLY A 472 1 18 HELIX 18 AB9 ASN A 474 TYR A 486 1 13 HELIX 19 AC1 SER A 491 TYR A 506 1 16 HELIX 20 AC2 TYR A 506 LYS A 519 1 14 HELIX 21 AC3 SER A 538 LEU A 566 1 29 HELIX 22 AC4 LYS A 567 ASN A 570 5 4 HELIX 23 AC5 PHE A 589 TYR A 607 1 19 SHEET 1 AA1 4 ILE A 59 ILE A 60 0 SHEET 2 AA1 4 ILE A 108 ASP A 111 1 O ILE A 109 N ILE A 60 SHEET 3 AA1 4 ILE A 95 ILE A 100 -1 N ILE A 100 O ILE A 108 SHEET 4 AA1 4 ASN A 82 THR A 85 -1 N GLN A 84 O LEU A 97 SHEET 1 AA2 2 LYS A 135 ILE A 137 0 SHEET 2 AA2 2 ILE A 157 ASP A 159 1 O PHE A 158 N LYS A 135 SHEET 1 AA3 3 LYS A 363 ILE A 364 0 SHEET 2 AA3 3 ILE A 257 VAL A 259 -1 N ILE A 257 O ILE A 364 SHEET 3 AA3 3 PHE A 398 ILE A 399 -1 O ILE A 399 N LYS A 258 SHEET 1 AA4 4 LYS A 572 VAL A 577 0 SHEET 2 AA4 4 GLU A 580 ASN A 586 -1 O GLU A 584 N LYS A 572 SHEET 3 AA4 4 ASN A 404 PHE A 411 -1 N ALA A 409 O ILE A 581 SHEET 4 AA4 4 VAL A 616 ALA A 621 -1 O SER A 617 N ASP A 410 SHEET 1 AA5 2 GLN A 523 TYR A 524 0 SHEET 2 AA5 2 VAL A 532 ILE A 533 -1 O VAL A 532 N TYR A 524 LINK O3' DG F 19 P 2DA F 20 1555 1555 1.61 LINK OD1 ASP A 410 MG B MG A 701 1555 1555 2.17 LINK O PHE A 411 MG B MG A 701 1555 1555 2.80 LINK OD2 ASP A 579 MG B MG A 701 1555 1555 2.57 LINK MG B MG A 701 O3G DGT A 702 1555 1555 2.52 LINK MG B MG A 701 O2B DGT A 702 1555 1555 2.82 LINK MG B MG A 701 O2A DGT A 702 1555 1555 2.74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000