data_9CFN # _entry.id 9CFN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9CFN pdb_00009cfn 10.2210/pdb9cfn/pdb WWPDB D_1000284948 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-07-16 ? 2 'Structure model' 1 1 2025-07-23 ? 3 'Structure model' 1 2 2025-09-10 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation 3 2 'Structure model' citation_author 4 3 'Structure model' citation 5 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 2 'Structure model' '_citation_author.name' 3 3 'Structure model' '_citation.country' 4 3 'Structure model' '_citation.journal_abbrev' 5 3 'Structure model' '_citation.journal_id_ASTM' 6 3 'Structure model' '_citation.journal_id_CSD' 7 3 'Structure model' '_citation.journal_id_ISSN' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' 13 3 'Structure model' '_citation_author.identifier_ORCID' 14 3 'Structure model' '_citation_author.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9CFN _pdbx_database_status.recvd_initial_deposition_date 2024-06-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email as6282@cumc.columbia.edu _pdbx_contact_author.name_first Anna-Lena _pdbx_contact_author.name_last Steckelberg _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7988-9946 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gezelle, J.' 1 0000-0003-3664-6199 'Wimberly, B.' 2 0000-0003-3928-8358 'Gong, Z.' 3 0000-0003-0760-1493 'Steckelberg, A.L.' 4 0000-0001-7988-9946 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'A conserved viral RNA fold enables nuclease resistance across kingdoms of life.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf840 _citation.pdbx_database_id_PubMed 40884403 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gezelle, J.G.' 1 0000-0003-3664-6199 primary 'Korn, S.M.' 2 0000-0003-3798-3277 primary 'McDonald, J.T.' 3 0009-0008-7617-5700 primary 'Gong, Z.' 4 0000-0003-0760-1493 primary 'Erickson, A.' 5 ? primary 'Huang, C.H.' 6 ? primary 'Yang, F.' 7 0009-0009-1860-288X primary 'Cronin, M.' 8 0009-0004-3524-6227 primary 'Kuo, Y.W.' 9 0000-0003-2746-2953 primary 'Wimberly, B.T.' 10 0000-0003-3928-8358 primary 'Steckelberg, A.L.' 11 0000-0001-7988-9946 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (59-MER)' 19012.357 2 ? ? ? ? 2 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 24 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AAGUACCCUCCAAGCCCUACAGGUUGGAAGAGGGGGCUAUCAGUCCUGUAGGCAGACUC _entity_poly.pdbx_seq_one_letter_code_can AAGUACCCUCCAAGCCCUACAGGUUGGAAGAGGGGGCUAUCAGUCCUGUAGGCAGACUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRIDIUM HEXAMMINE ION' IRI 3 'MAGNESIUM ION' MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 A n 1 3 G n 1 4 U n 1 5 A n 1 6 C n 1 7 C n 1 8 C n 1 9 U n 1 10 C n 1 11 C n 1 12 A n 1 13 A n 1 14 G n 1 15 C n 1 16 C n 1 17 C n 1 18 U n 1 19 A n 1 20 C n 1 21 A n 1 22 G n 1 23 G n 1 24 U n 1 25 U n 1 26 G n 1 27 G n 1 28 A n 1 29 A n 1 30 G n 1 31 A n 1 32 G n 1 33 G n 1 34 G n 1 35 G n 1 36 G n 1 37 C n 1 38 U n 1 39 A n 1 40 U n 1 41 C n 1 42 A n 1 43 G n 1 44 U n 1 45 C n 1 46 C n 1 47 U n 1 48 G n 1 49 U n 1 50 A n 1 51 G n 1 52 G n 1 53 C n 1 54 A n 1 55 G n 1 56 A n 1 57 C n 1 58 U n 1 59 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 59 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Beet western yellows ST9 associated virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198589 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Beet western yellows ST9 associated virus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id L04281.2 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A A . n A 1 2 A 2 2 2 A A A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 A 12 12 12 A A A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 A 19 19 19 A A A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 U 24 24 24 U U A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 C 37 37 37 C C A . n A 1 38 U 38 38 38 U U A . n A 1 39 A 39 39 39 A A A . n A 1 40 U 40 40 40 U U A . n A 1 41 C 41 41 41 C C A . n A 1 42 A 42 42 42 A A A . n A 1 43 G 43 43 43 G G A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n A 1 46 C 46 46 46 C C A . n A 1 47 U 47 47 47 U U A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 A 50 50 50 A A A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 C 53 53 53 C C A . n A 1 54 A 54 54 54 A A A . n A 1 55 G 55 55 55 G G A . n A 1 56 A 56 56 ? ? ? A . n A 1 57 C 57 57 ? ? ? A . n A 1 58 U 58 58 ? ? ? A . n A 1 59 C 59 59 ? ? ? A . n B 1 1 A 1 1 ? ? ? B . n B 1 2 A 2 2 2 A A B . n B 1 3 G 3 3 3 G G B . n B 1 4 U 4 4 4 U U B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 C 7 7 7 C C B . n B 1 8 C 8 8 8 C C B . n B 1 9 U 9 9 9 U U B . n B 1 10 C 10 10 10 C C B . n B 1 11 C 11 11 11 C C B . n B 1 12 A 12 12 12 A A B . n B 1 13 A 13 13 13 A A B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 C 16 16 16 C C B . n B 1 17 C 17 17 17 C C B . n B 1 18 U 18 18 18 U U B . n B 1 19 A 19 19 19 A A B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 G 22 22 22 G G B . n B 1 23 G 23 23 23 G G B . n B 1 24 U 24 24 24 U U B . n B 1 25 U 25 25 25 U U B . n B 1 26 G 26 26 26 G G B . n B 1 27 G 27 27 27 G G B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 G 30 30 30 G G B . n B 1 31 A 31 31 31 A A B . n B 1 32 G 32 32 32 G G B . n B 1 33 G 33 33 33 G G B . n B 1 34 G 34 34 34 G G B . n B 1 35 G 35 35 35 G G B . n B 1 36 G 36 36 36 G G B . n B 1 37 C 37 37 37 C C B . n B 1 38 U 38 38 38 U U B . n B 1 39 A 39 39 39 A A B . n B 1 40 U 40 40 40 U U B . n B 1 41 C 41 41 41 C C B . n B 1 42 A 42 42 42 A A B . n B 1 43 G 43 43 43 G G B . n B 1 44 U 44 44 44 U U B . n B 1 45 C 45 45 45 C C B . n B 1 46 C 46 46 46 C C B . n B 1 47 U 47 47 47 U U B . n B 1 48 G 48 48 48 G G B . n B 1 49 U 49 49 49 U U B . n B 1 50 A 50 50 50 A A B . n B 1 51 G 51 51 51 G G B . n B 1 52 G 52 52 52 G G B . n B 1 53 C 53 53 53 C C B . n B 1 54 A 54 54 54 A A B . n B 1 55 G 55 55 55 G G B . n B 1 56 A 56 56 ? ? ? B . n B 1 57 C 57 57 ? ? ? B . n B 1 58 U 58 58 ? ? ? B . n B 1 59 C 59 59 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IRI 1 101 1 IRI IRI A . D 2 IRI 1 102 2 IRI IRI A . E 2 IRI 1 103 4 IRI IRI A . F 2 IRI 1 104 7 IRI IRI A . G 2 IRI 1 105 8 IRI IRI A . H 2 IRI 1 106 13 IRI IRI A . I 2 IRI 1 107 14 IRI IRI A . J 2 IRI 1 108 17 IRI IRI A . K 2 IRI 1 109 18 IRI IRI A . L 2 IRI 1 110 20 IRI IRI A . M 2 IRI 1 111 22 IRI IRI A . N 2 IRI 1 112 23 IRI IRI A . O 2 IRI 1 113 24 IRI IRI A . P 3 MG 1 114 1 MG MG A . Q 2 IRI 1 101 3 IRI IRI B . R 2 IRI 1 102 5 IRI IRI B . S 2 IRI 1 103 6 IRI IRI B . T 2 IRI 1 104 9 IRI IRI B . U 2 IRI 1 105 10 IRI IRI B . V 2 IRI 1 106 11 IRI IRI B . W 2 IRI 1 107 12 IRI IRI B . X 2 IRI 1 108 15 IRI IRI B . Y 2 IRI 1 109 16 IRI IRI B . Z 2 IRI 1 110 19 IRI IRI B . AA 2 IRI 1 111 21 IRI IRI B . BA 3 MG 1 112 2 MG MG B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? 'v3.352 5-Apr-2024' 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 103.620 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9CFN _cell.details ? _cell.formula_units_Z ? _cell.length_a 107.637 _cell.length_a_esd ? _cell.length_b 42.392 _cell.length_b_esd ? _cell.length_c 84.491 _cell.length_c_esd ? _cell.volume 374686.528 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9CFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9CFN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.07 _exptl_crystal.description 'Rod-like cluster' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;well solution: 0.02 M Magnesium chloride hexahydrate 0.05 M Sodium cacodylate trihydrate pH 7.0 15% v/v 2-Propanol 0.001 M Hexammine cobalt(III) chloride 0.001 M Spermine 5 mg/mL RNA was dissolved in: 2.5 mM MgCl2 10 mM HEPES-KOH pH 7.5 0.5 mM spermidine 300 nL sitting drops were set up using the mosquito with a 1:1 well:RNA ratio ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-07-14 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 55.77 _reflns.entry_id 9CFN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 41.06 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8421 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 87.25 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.53 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.1177 _reflns.pdbx_Rpim_I_all 0.05966 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.981 _reflns.pdbx_CC_star 0.995 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.004 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.71 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 494 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.9738 _reflns_shell.pdbx_Rpim_I_all 0.4913 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.817 _reflns_shell.pdbx_CC_star 0.948 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 58.81 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.8365 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 52.60 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9CFN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.90 _refine.ls_d_res_low 41.06 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7384 _refine.ls_number_reflns_R_free 739 _refine.ls_number_reflns_R_work 6645 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.28 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2214 _refine.ls_R_factor_R_free 0.2581 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2173 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.6471 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3523 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 41.06 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2503 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2333 _refine_hist.pdbx_number_atoms_ligand 170 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0017 ? 2754 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.5034 ? 4427 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0246 ? 544 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0028 ? 109 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.7816 ? 1301 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.90 3.12 . . 104 932 62.26 . . . . 0.2743 . . . . . . . . . . . 0.3677 'X-RAY DIFFRACTION' 3.12 3.44 . . 130 1173 78.02 . . . . 0.2188 . . . . . . . . . . . 0.2740 'X-RAY DIFFRACTION' 3.44 3.94 . . 164 1477 97.27 . . . . 0.2451 . . . . . . . . . . . 0.2851 'X-RAY DIFFRACTION' 3.94 4.95 . . 169 1512 99.94 . . . . 0.2155 . . . . . . . . . . . 0.2697 'X-RAY DIFFRACTION' 4.96 41.06 . . 172 1551 98.18 . . . . 0.1921 . . . . . . . . . . . 0.2112 # _struct.entry_id 9CFN _struct.title 'Crystal structure of an exoribonuclease-resistant RNA from a Tombusvirus-like associated RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9CFN _struct_keywords.text 'xrRNA, pseudoknot, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 3 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? BA N N 3 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NC_004045.2 _struct_ref.pdbx_db_accession 1782103816 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AAGUACCCUCCAAGCCCUACAGGUUGGAAGAGGGGGCUAUCAGUCCUGUAGGCAGACUC _struct_ref.pdbx_align_begin 2378 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9CFN A 1 ? 59 ? 1782103816 2378 ? 2436 ? 1 59 2 1 9CFN B 1 ? 59 ? 1782103816 2378 ? 2436 ? 1 59 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1 B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details 'SEC-SAXS, size-exclusion shows a monomer' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 41 OP2 ? ? ? 1_555 P MG . MG ? ? A C 41 A MG 114 1_555 ? ? ? ? ? ? ? 1.798 ? ? metalc2 metalc ? ? A G 43 O6 ? ? ? 1_555 P MG . MG ? ? A G 43 A MG 114 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc3 metalc ? ? B C 41 OP2 ? ? ? 1_555 BA MG . MG ? ? B C 41 B MG 112 1_555 ? ? ? ? ? ? ? 1.917 ? ? metalc4 metalc ? ? B G 43 O6 ? ? ? 1_555 BA MG . MG ? ? B G 43 B MG 112 1_555 ? ? ? ? ? ? ? 1.920 ? ? hydrog1 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 38 N3 ? ? A A 2 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 38 O4 ? ? A A 2 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 3 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 3 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 3 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 36 O6 ? ? A U 4 A G 36 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 36 N1 ? ? A U 4 A G 36 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 26 N2 ? ? A A 5 A G 26 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 26 N3 ? ? A A 5 A G 26 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog10 hydrog ? ? A A 5 N6 ? ? ? 1_555 A A 42 N1 ? ? A A 5 A A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog11 hydrog ? ? A A 5 N7 ? ? ? 1_555 A A 42 N6 ? ? A A 5 A A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 6 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 6 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 6 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 7 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 7 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 7 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 8 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 8 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 8 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 33 O6 ? ? A U 9 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 33 N1 ? ? A U 9 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 10 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 10 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 10 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 13 N3 ? ? ? 1_555 A G 52 N2 ? ? A A 13 A G 52 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 53 N3 ? ? A G 14 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 14 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 53 N4 ? ? A G 14 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 16 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 16 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 16 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 17 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 17 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 17 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 50 N1 ? ? A U 18 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 50 N6 ? ? A U 18 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 49 N3 ? ? A A 19 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 49 O4 ? ? A A 19 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 20 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 20 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 20 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 21 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 21 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 22 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 22 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 22 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 23 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 23 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 23 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 24 A A 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog55 hydrog ? ? A U 24 O2 ? ? ? 1_555 A A 31 N6 ? ? A U 24 A A 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog56 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 29 N7 ? ? A U 25 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? A U 25 O2 ? ? ? 1_555 A A 29 N6 ? ? A U 25 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog58 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 27 A C 41 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog59 hydrog ? ? A A 29 N1 ? ? ? 1_555 A G 43 N2 ? ? A A 29 A G 43 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog60 hydrog ? ? A A 29 N6 ? ? ? 1_555 A G 43 N3 ? ? A A 29 A G 43 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog61 hydrog ? ? B A 2 N1 ? ? ? 1_555 B U 38 N3 ? ? B A 2 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B A 2 N6 ? ? ? 1_555 B U 38 O4 ? ? B A 2 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 37 N3 ? ? B G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 37 O2 ? ? B G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 37 N4 ? ? B G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B U 4 N3 ? ? ? 1_555 B G 36 O6 ? ? B U 4 B G 36 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog67 hydrog ? ? B U 4 O2 ? ? ? 1_555 B G 36 N1 ? ? B U 4 B G 36 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? B A 5 N1 ? ? ? 1_555 B G 26 N2 ? ? B A 5 B G 26 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog69 hydrog ? ? B A 5 N6 ? ? ? 1_555 B G 26 N3 ? ? B A 5 B G 26 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog70 hydrog ? ? B A 5 N6 ? ? ? 1_555 B A 42 N1 ? ? B A 5 B A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog71 hydrog ? ? B A 5 N7 ? ? ? 1_555 B A 42 N6 ? ? B A 5 B A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog72 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 6 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 6 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 6 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 7 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 7 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 7 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 34 N1 ? ? B C 8 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 34 O6 ? ? B C 8 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 34 N2 ? ? B C 8 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B U 9 N3 ? ? ? 1_555 B G 33 O6 ? ? B U 9 B G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? B U 9 O2 ? ? ? 1_555 B G 33 N1 ? ? B U 9 B G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 32 N1 ? ? B C 10 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 32 O6 ? ? B C 10 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 32 N2 ? ? B C 10 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 11 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 11 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 11 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B A 13 N3 ? ? ? 1_555 B G 52 N2 ? ? B A 13 B G 52 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog90 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 53 N3 ? ? B G 14 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 53 O2 ? ? B G 14 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 53 N4 ? ? B G 14 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 52 N1 ? ? B C 16 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 52 O6 ? ? B C 16 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 52 N2 ? ? B C 16 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 17 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 17 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 17 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 17 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 17 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 17 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 50 N1 ? ? B U 18 B A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 50 N6 ? ? B U 18 B A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B A 19 N1 ? ? ? 1_555 B U 49 N3 ? ? B A 19 B U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B A 19 N6 ? ? ? 1_555 B U 49 O4 ? ? B A 19 B U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 48 N1 ? ? B C 20 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 48 O6 ? ? B C 20 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 48 N2 ? ? B C 20 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B A 21 N1 ? ? ? 1_555 B U 47 N3 ? ? B A 21 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 47 O4 ? ? B A 21 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 22 N1 ? ? ? 1_555 B C 46 N3 ? ? B G 22 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 22 N2 ? ? ? 1_555 B C 46 O2 ? ? B G 22 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 22 O6 ? ? ? 1_555 B C 46 N4 ? ? B G 22 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 45 N3 ? ? B G 23 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 45 O2 ? ? B G 23 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 45 N4 ? ? B G 23 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B U 24 N3 ? ? ? 1_555 B A 31 N1 ? ? B U 24 B A 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog115 hydrog ? ? B U 24 O2 ? ? ? 1_555 B A 31 N6 ? ? B U 24 B A 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog116 hydrog ? ? B U 25 N3 ? ? ? 1_555 B A 29 N7 ? ? B U 25 B A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog117 hydrog ? ? B U 25 O2 ? ? ? 1_555 B A 29 N6 ? ? B U 25 B A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog118 hydrog ? ? B G 27 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 27 B C 41 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog119 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 43 N2 ? ? B A 29 B G 43 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog120 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 43 N3 ? ? B A 29 B G 43 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A C 41 ? A C 41 ? 1_555 MG ? P MG . ? A MG 114 ? 1_555 O6 ? A G 43 ? A G 43 ? 1_555 152.6 ? 2 OP2 ? B C 41 ? B C 41 ? 1_555 MG ? BA MG . ? B MG 112 ? 1_555 O6 ? B G 43 ? B G 43 ? 1_555 155.0 ? # _pdbx_entry_details.entry_id 9CFN _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 36.9113696035 1.61348143311 31.2996178732 -0.228688934973 ? -0.178058789701 ? -0.0295244488808 ? 0.126079618015 ? 0.0833209292183 ? 0.17510570887 ? 0.00951895657302 ? -0.00442703629769 ? 0.0122281757016 ? 0.0028427342124 ? -0.011841585744 ? 0.0233611878158 ? 0.00647695569323 ? 0.0020620958797 ? -0.0169059560068 ? 0.0281861585908 ? -0.00900194788644 ? 0.0205517230183 ? 0.0506108300739 ? -0.00319826782354 ? 0.00828948687525 ? 2 'X-RAY DIFFRACTION' ? refined 41.1691972505 3.95460070448 10.5532102573 0.717990169427 ? -0.0879817114483 ? 0.171561111674 ? 0.631547819886 ? 0.0791705159853 ? 0.481043983496 ? 0.015702621696 ? 0.00566676012453 ? 0.00399103571662 ? 0.0029824582443 ? 0.0012373574557 ? 0.0213906482117 ? 0.185470045501 ? 0.00726341785722 ? 0.0925308203046 ? -0.107960941884 ? 0.0750301130857 ? 0.0660196545844 ? -0.169226722512 ? -0.0309208687852 ? -0.000251187801647 ? 3 'X-RAY DIFFRACTION' ? refined 30.7132733037 6.95160375631 25.6762573986 0.076191339544 ? 0.0904453815976 ? -0.0432772148692 ? 0.142534451987 ? 0.0310361076154 ? 0.152621907759 ? 0.0121009732823 ? -0.0448262716088 ? -0.0303999059737 ? 0.322673929589 ? 0.238878946837 ? 0.180732440546 ? 0.153621008101 ? 0.110520667977 ? -0.0399517612884 ? -0.240676940836 ? 0.0345488365543 ? 0.141716658157 ? -0.161067356006 ? -0.0391384274166 ? 0.454966693308 ? 4 'X-RAY DIFFRACTION' ? refined 41.3500016622 1.67559810639 2.60088320094 1.30547841239 ? 0.221375095844 ? 0.450985337859 ? 0.746794797664 ? 0.0273569152114 ? 0.576273899473 ? 0.103798698306 ? 0.0132422743007 ? 0.0442669866557 ? 0.00137173055315 ? 0.00650997291274 ? 0.0218891278181 ? 0.0143235394843 ? 0.0450391292817 ? -0.00422915524495 ? -0.0608122120838 ? 0.0824015605534 ? -0.069341822108 ? -0.0273629394395 ? -0.0495810579542 ? 0.0175124543822 ? 5 'X-RAY DIFFRACTION' ? refined 0.576373612557 0.454971603962 35.6417684126 0.0513998579949 ? 0.0393896524206 ? -0.0911815177294 ? 0.182467820951 ? -0.0647132878883 ? 0.247579789568 ? 0.045381309746 ? -0.020439157708 ? -0.0269132816329 ? 0.00791977809548 ? 0.0100379776934 ? 0.0172694523772 ? -0.0227767621747 ? -0.0150512104863 ? 0.0198623788845 ? -0.00274686574018 ? -0.0748913354004 ? 0.0271835619799 ? -0.0555770652701 ? -0.0512538605939 ? -0.0495256155791 ? 6 'X-RAY DIFFRACTION' ? refined 7.00398953606 -1.11670502753 15.649557839 0.771253185597 ? 0.0254484871655 ? -0.243048765933 ? 0.579228429222 ? -0.0817838963433 ? 0.190961431628 ? 0.0774588215683 ? 0.00472721710418 ? -0.0481426644377 ? 0.0454599708627 ? -0.0215164863664 ? 0.0378822971444 ? 0.0481943763477 ? -0.0601735578064 ? -0.0689273386215 ? -0.0187390312394 ? 0.105754529399 ? 0.000258710806343 ? 0.222609219447 ? -0.00139939747593 ? 0.050682732648 ? 7 'X-RAY DIFFRACTION' ? refined 9.05890096785 -4.10057964869 34.1521851747 0.0970544230079 ? -0.0360895498401 ? 0.000108844575619 ? 0.227243101865 ? -0.0260806463975 ? 0.208651202087 ? 0.289680180508 ? 0.0524333494135 ? -0.0441855823538 ? 0.0211325363178 ? -0.046494545649 ? 0.499855478126 ? -0.149421818851 ? 0.0578052405873 ? 0.144336285799 ? 0.0248784803095 ? -0.056876197709 ? 0.119765698583 ? -0.0379985116436 ? -0.10513369046 ? -0.245758948078 ? 8 'X-RAY DIFFRACTION' ? refined 10.740533034 0.784828891161 8.48908468714 0.93752313151 ? 0.192858132188 ? -0.0617721362879 ? 0.848671103814 ? 0.0330223595649 ? 0.504364295824 ? 0.00142646189137 ? 0.000604328130937 ? -0.00361964677133 ? -0.000578467772879 ? -0.00417696163336 ? 0.0156861389201 ? -0.0717599207734 ? -0.0178907969539 ? 0.0660628528886 ? -0.137908211174 ? -0.103057313897 ? 0.108120205925 ? -0.056421259093 ? 0.03096430689 ? -6.48493493357e-05 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 11 ? ? ;chain 'A' and (resid 1 through 11 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 12 ? A ? A 22 ? ? ;chain 'A' and (resid 12 through 22 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 23 ? A ? A 46 ? ? ;chain 'A' and (resid 23 through 46 ) ; 4 'X-RAY DIFFRACTION' 4 A ? A 47 ? A ? A 55 ? ? ;chain 'A' and (resid 47 through 55 ) ; 5 'X-RAY DIFFRACTION' 5 B ? B 2 ? B ? B 11 ? ? ;chain 'B' and (resid 2 through 11 ) ; 6 'X-RAY DIFFRACTION' 6 B ? B 12 ? B ? B 22 ? ? ;chain 'B' and (resid 12 through 22) ; 7 'X-RAY DIFFRACTION' 7 B ? B 23 ? B ? B 46 ? ? ;chain 'B' and (resid 23 through 46 ) ; 8 'X-RAY DIFFRACTION' 8 B ? B 47 ? B ? B 55 ? ? ;chain 'B' and (resid 47 through 55 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A A 56 ? A A 56 2 1 Y 1 A C 57 ? A C 57 3 1 Y 1 A U 58 ? A U 58 4 1 Y 1 A C 59 ? A C 59 5 1 Y 1 B A 1 ? B A 1 6 1 Y 1 B A 56 ? B A 56 7 1 Y 1 B C 57 ? B C 57 8 1 Y 1 B U 58 ? B U 58 9 1 Y 1 B C 59 ? B C 59 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 IRI IR IR N N 111 IRI N1 N N N 112 IRI N2 N N N 113 IRI N3 N N N 114 IRI N4 N N N 115 IRI N5 N N N 116 IRI N6 N N N 117 IRI HN11 H N N 118 IRI HN12 H N N 119 IRI HN13 H N N 120 IRI HN21 H N N 121 IRI HN22 H N N 122 IRI HN23 H N N 123 IRI HN31 H N N 124 IRI HN32 H N N 125 IRI HN33 H N N 126 IRI HN41 H N N 127 IRI HN42 H N N 128 IRI HN43 H N N 129 IRI HN51 H N N 130 IRI HN52 H N N 131 IRI HN53 H N N 132 IRI HN61 H N N 133 IRI HN62 H N N 134 IRI HN63 H N N 135 MG MG MG N N 136 U OP3 O N N 137 U P P N N 138 U OP1 O N N 139 U OP2 O N N 140 U "O5'" O N N 141 U "C5'" C N N 142 U "C4'" C N R 143 U "O4'" O N N 144 U "C3'" C N S 145 U "O3'" O N N 146 U "C2'" C N R 147 U "O2'" O N N 148 U "C1'" C N R 149 U N1 N N N 150 U C2 C N N 151 U O2 O N N 152 U N3 N N N 153 U C4 C N N 154 U O4 O N N 155 U C5 C N N 156 U C6 C N N 157 U HOP3 H N N 158 U HOP2 H N N 159 U "H5'" H N N 160 U "H5''" H N N 161 U "H4'" H N N 162 U "H3'" H N N 163 U "HO3'" H N N 164 U "H2'" H N N 165 U "HO2'" H N N 166 U "H1'" H N N 167 U H3 H N N 168 U H5 H N N 169 U H6 H N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 IRI IR N1 sing N N 116 IRI IR N2 sing N N 117 IRI IR N3 sing N N 118 IRI IR N4 sing N N 119 IRI IR N5 sing N N 120 IRI IR N6 sing N N 121 IRI N1 HN11 sing N N 122 IRI N1 HN12 sing N N 123 IRI N1 HN13 sing N N 124 IRI N2 HN21 sing N N 125 IRI N2 HN22 sing N N 126 IRI N2 HN23 sing N N 127 IRI N3 HN31 sing N N 128 IRI N3 HN32 sing N N 129 IRI N3 HN33 sing N N 130 IRI N4 HN41 sing N N 131 IRI N4 HN42 sing N N 132 IRI N4 HN43 sing N N 133 IRI N5 HN51 sing N N 134 IRI N5 HN52 sing N N 135 IRI N5 HN53 sing N N 136 IRI N6 HN61 sing N N 137 IRI N6 HN62 sing N N 138 IRI N6 HN63 sing N N 139 U OP3 P sing N N 140 U OP3 HOP3 sing N N 141 U P OP1 doub N N 142 U P OP2 sing N N 143 U P "O5'" sing N N 144 U OP2 HOP2 sing N N 145 U "O5'" "C5'" sing N N 146 U "C5'" "C4'" sing N N 147 U "C5'" "H5'" sing N N 148 U "C5'" "H5''" sing N N 149 U "C4'" "O4'" sing N N 150 U "C4'" "C3'" sing N N 151 U "C4'" "H4'" sing N N 152 U "O4'" "C1'" sing N N 153 U "C3'" "O3'" sing N N 154 U "C3'" "C2'" sing N N 155 U "C3'" "H3'" sing N N 156 U "O3'" "HO3'" sing N N 157 U "C2'" "O2'" sing N N 158 U "C2'" "C1'" sing N N 159 U "C2'" "H2'" sing N N 160 U "O2'" "HO2'" sing N N 161 U "C1'" N1 sing N N 162 U "C1'" "H1'" sing N N 163 U N1 C2 sing N N 164 U N1 C6 sing N N 165 U C2 O2 doub N N 166 U C2 N3 sing N N 167 U N3 C4 sing N N 168 U N3 H3 sing N N 169 U C4 O4 doub N N 170 U C4 C5 sing N N 171 U C5 C6 doub N N 172 U C5 H5 sing N N 173 U C6 H6 sing N N 174 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9CFN 'double helix' 9CFN 'a-form double helix' 9CFN 'parallel strands' 9CFN 'bulge loop' 9CFN 'mismatched base pair' 9CFN 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 2 1_555 A U 38 1_555 -0.336 -0.122 -0.037 -0.809 -8.493 -1.263 1 A_A2:U38_A A 2 ? A 38 ? 20 1 1 A G 3 1_555 A C 37 1_555 0.117 -0.005 0.425 -11.052 -26.619 5.553 2 A_G3:C37_A A 3 ? A 37 ? 19 1 1 A U 4 1_555 A G 36 1_555 2.549 -0.613 0.193 -20.282 -18.032 -9.087 3 A_U4:G36_A A 4 ? A 36 ? 28 1 1 A C 7 1_555 A G 35 1_555 0.147 -0.084 -0.082 13.440 -16.825 4.501 4 A_C7:G35_A A 7 ? A 35 ? 19 1 1 A C 8 1_555 A G 34 1_555 0.492 -0.159 0.229 -1.521 -6.863 4.915 5 A_C8:G34_A A 8 ? A 34 ? 19 1 1 A U 9 1_555 A G 33 1_555 2.277 -0.314 -0.034 3.899 -8.040 -2.246 6 A_U9:G33_A A 9 ? A 33 ? 28 1 1 A C 10 1_555 A G 32 1_555 0.182 -0.355 0.151 -1.753 -9.494 -1.949 7 A_C10:G32_A A 10 ? A 32 ? 19 1 1 A C 11 1_555 A G 30 1_555 -1.115 -0.133 0.263 5.947 -9.945 -10.146 8 A_C11:G30_A A 11 ? A 30 ? 19 1 1 A G 14 1_555 A C 53 1_555 -0.455 -0.009 -0.530 5.672 4.863 5.357 9 A_G14:C53_A A 14 ? A 53 ? 19 1 1 A C 16 1_555 A G 52 1_555 0.309 0.013 -0.535 11.110 -15.539 -3.202 10 A_C16:G52_A A 16 ? A 52 ? 19 1 1 A C 17 1_555 A G 51 1_555 0.548 0.118 0.647 -5.781 -12.404 -5.537 11 A_C17:G51_A A 17 ? A 51 ? 19 1 1 A U 18 1_555 A A 50 1_555 0.656 -0.103 0.003 1.633 -13.096 -6.147 12 A_U18:A50_A A 18 ? A 50 ? 20 1 1 A A 19 1_555 A U 49 1_555 -0.543 0.308 -0.012 -4.922 -12.217 -9.179 13 A_A19:U49_A A 19 ? A 49 ? 20 1 1 A C 20 1_555 A G 48 1_555 1.021 -0.356 0.340 -2.510 -15.364 -18.274 14 A_C20:G48_A A 20 ? A 48 ? 19 1 1 A A 21 1_555 A U 47 1_555 -0.704 -0.081 0.281 4.552 -10.043 -5.122 15 A_A21:U47_A A 21 ? A 47 ? 20 1 1 A G 22 1_555 A C 46 1_555 -0.504 0.247 -0.179 -5.535 -5.704 3.602 16 A_G22:C46_A A 22 ? A 46 ? 19 1 1 A G 23 1_555 A C 45 1_555 -0.074 -0.146 -0.347 -11.896 -13.599 -5.969 17 A_G23:C45_A A 23 ? A 45 ? 19 1 1 A U 24 1_555 A A 31 1_555 0.129 -0.900 0.132 -13.722 11.835 -155.860 18 A_U24:A31_A A 24 ? A 31 ? 21 2 1 A U 25 1_555 A A 29 1_555 4.221 -2.373 0.358 -5.187 13.781 -93.105 19 A_U25:A29_A A 25 ? A 29 ? 24 4 1 A A 5 1_555 A A 42 1_555 -4.384 1.215 0.810 -9.222 18.993 -111.876 20 A_A5:A42_A A 5 ? A 42 ? 5 4 1 A C 6 1_555 A G 27 1_555 0.494 0.000 1.005 -22.773 3.580 4.130 21 A_C6:G27_A A 6 ? A 27 ? 19 1 1 B A 2 1_555 B U 38 1_555 -0.445 -0.261 0.055 0.184 -12.089 -3.683 22 B_A2:U38_B B 2 ? B 38 ? 20 1 1 B G 3 1_555 B C 37 1_555 0.049 -0.222 0.360 -12.058 -27.332 4.636 23 B_G3:C37_B B 3 ? B 37 ? 19 1 1 B U 4 1_555 B G 36 1_555 2.202 -0.300 0.377 -22.767 -16.071 -6.524 24 B_U4:G36_B B 4 ? B 36 ? 28 1 1 B C 7 1_555 B G 35 1_555 -0.079 -0.075 -0.144 14.575 -14.846 2.632 25 B_C7:G35_B B 7 ? B 35 ? 19 1 1 B C 8 1_555 B G 34 1_555 0.507 -0.046 0.106 3.460 -5.756 5.182 26 B_C8:G34_B B 8 ? B 34 ? 19 1 1 B U 9 1_555 B G 33 1_555 2.366 -0.611 -0.026 1.144 -9.268 -1.777 27 B_U9:G33_B B 9 ? B 33 ? 28 1 1 B C 10 1_555 B G 32 1_555 -0.100 -0.197 -0.071 -2.067 -12.384 2.995 28 B_C10:G32_B B 10 ? B 32 ? 19 1 1 B C 11 1_555 B G 30 1_555 -1.072 -0.081 0.250 5.931 -9.165 -12.635 29 B_C11:G30_B B 11 ? B 30 ? 19 1 1 B A 5 1_555 B G 26 1_555 -3.143 4.155 -0.452 -13.528 -2.856 75.912 30 B_A5:G26_B B 5 ? B 26 ? 10 6 1 B A 29 1_555 B U 25 1_555 -4.062 -2.119 0.398 4.776 12.625 -92.902 31 B_A29:U25_B B 29 ? B 25 ? 24 4 1 B A 31 1_555 B U 24 1_555 -0.250 0.719 -0.054 13.140 -12.908 155.380 32 B_A31:U24_B B 31 ? B 24 ? 21 2 1 B C 45 1_555 B G 23 1_555 -0.155 -0.163 -0.358 11.135 -12.178 -3.941 33 B_C45:G23_B B 45 ? B 23 ? 19 1 1 B C 46 1_555 B G 22 1_555 0.467 0.022 -0.034 2.012 -6.127 3.848 34 B_C46:G22_B B 46 ? B 22 ? 19 1 1 B U 47 1_555 B A 21 1_555 0.925 -0.125 0.279 -0.023 -14.238 1.425 35 B_U47:A21_B B 47 ? B 21 ? 20 1 1 B G 48 1_555 B C 20 1_555 -0.706 -0.306 0.225 0.063 -16.904 -11.160 36 B_G48:C20_B B 48 ? B 20 ? 19 1 1 B U 49 1_555 B A 19 1_555 1.004 0.120 0.252 -1.921 -11.644 -6.598 37 B_U49:A19_B B 49 ? B 19 ? 20 1 1 B A 50 1_555 B U 18 1_555 0.040 -0.003 0.425 3.709 -9.189 -0.537 38 B_A50:U18_B B 50 ? B 18 ? 20 1 1 B G 51 1_555 B C 17 1_555 -0.609 0.001 0.245 -1.044 -15.013 -1.944 39 B_G51:C17_B B 51 ? B 17 ? 19 1 1 B G 52 1_555 B C 16 1_555 0.520 -0.128 -0.251 -10.693 -10.892 -9.734 40 B_G52:C16_B B 52 ? B 16 ? 19 1 1 B C 53 1_555 B G 14 1_555 1.308 -0.170 -0.685 -3.553 0.149 16.104 41 B_C53:G14_B B 53 ? B 14 ? 19 1 1 B C 6 1_555 B G 27 1_555 0.572 -0.089 0.836 -18.621 1.028 1.993 42 B_C6:G27_B B 6 ? B 27 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 2 1_555 A U 38 1_555 A G 3 1_555 A C 37 1_555 0.627 -1.418 3.434 -0.226 13.175 37.941 -3.547 -0.941 2.805 19.557 0.336 40.084 1 AA_A2G3:C37U38_AA A 2 ? A 38 ? A 3 ? A 37 ? 1 A G 3 1_555 A C 37 1_555 A U 4 1_555 A G 36 1_555 -0.839 -1.007 3.406 3.195 2.877 48.535 -1.446 1.268 3.287 3.492 -3.878 48.713 2 AA_G3U4:G36C37_AA A 3 ? A 37 ? A 4 ? A 36 ? 1 A U 4 1_555 A G 36 1_555 A C 7 1_555 A G 35 1_555 -3.174 -0.539 3.106 20.841 -2.795 55.715 -0.431 4.058 1.933 -2.879 -21.469 59.253 3 AA_U4C7:G35G36_AA A 4 ? A 36 ? A 7 ? A 35 ? 1 A C 7 1_555 A G 35 1_555 A C 8 1_555 A G 34 1_555 -0.444 -1.744 3.654 -2.543 4.244 36.006 -3.443 0.324 3.455 6.826 4.091 36.333 4 AA_C7C8:G34G35_AA A 7 ? A 35 ? A 8 ? A 34 ? 1 A C 8 1_555 A G 34 1_555 A U 9 1_555 A G 33 1_555 -0.101 -1.399 3.092 4.994 3.542 37.607 -2.559 0.740 2.917 5.450 -7.685 38.084 5 AA_C8U9:G33G34_AA A 8 ? A 34 ? A 9 ? A 33 ? 1 A U 9 1_555 A G 33 1_555 A C 10 1_555 A G 32 1_555 0.159 -2.143 3.468 0.283 0.390 24.416 -5.195 -0.284 3.436 0.921 -0.669 24.421 6 AA_U9C10:G32G33_AA A 9 ? A 33 ? A 10 ? A 32 ? 1 A C 10 1_555 A G 32 1_555 A C 11 1_555 A G 30 1_555 0.595 -1.460 2.925 1.607 7.191 30.075 -3.916 -0.851 2.544 13.603 -3.040 30.944 7 AA_C10C11:G30G32_AA A 10 ? A 32 ? A 11 ? A 30 ? 1 A G 14 1_555 A C 53 1_555 A C 16 1_555 A G 52 1_555 1.704 -2.608 3.279 0.355 2.453 12.334 -14.604 -7.384 2.756 11.268 -1.632 12.579 8 AA_G14C16:G52C53_AA A 14 ? A 53 ? A 16 ? A 52 ? 1 A C 16 1_555 A G 52 1_555 A C 17 1_555 A G 51 1_555 -0.230 -2.072 3.852 -8.362 2.967 34.878 -3.849 -1.013 3.627 4.854 13.678 35.955 9 AA_C16C17:G51G52_AA A 16 ? A 52 ? A 17 ? A 51 ? 1 A C 17 1_555 A G 51 1_555 A U 18 1_555 A A 50 1_555 -0.101 -1.417 2.931 5.531 0.110 35.444 -2.315 0.872 2.879 0.179 -9.017 35.859 10 AA_C17U18:A50G51_AA A 17 ? A 51 ? A 18 ? A 50 ? 1 A U 18 1_555 A A 50 1_555 A A 19 1_555 A U 49 1_555 -0.316 -1.099 3.252 0.953 22.754 27.688 -4.707 0.637 1.843 40.051 -1.677 35.709 11 AA_U18A19:U49A50_AA A 18 ? A 50 ? A 19 ? A 49 ? 1 A A 19 1_555 A U 49 1_555 A C 20 1_555 A G 48 1_555 -0.404 -1.639 3.129 -2.675 4.769 41.940 -2.728 0.304 2.953 6.628 3.718 42.279 12 AA_A19C20:G48U49_AA A 19 ? A 49 ? A 20 ? A 48 ? 1 A C 20 1_555 A G 48 1_555 A A 21 1_555 A U 47 1_555 -0.022 -2.189 2.821 -1.388 9.591 17.377 -9.478 -0.392 1.422 28.997 4.198 19.878 13 AA_C20A21:U47G48_AA A 20 ? A 48 ? A 21 ? A 47 ? 1 A A 21 1_555 A U 47 1_555 A G 22 1_555 A C 46 1_555 -0.172 -1.733 3.296 -1.130 11.698 33.993 -4.358 0.130 2.583 19.307 1.865 35.911 14 AA_A21G22:C46U47_AA A 21 ? A 47 ? A 22 ? A 46 ? 1 A G 22 1_555 A C 46 1_555 A G 23 1_555 A C 45 1_555 -0.521 -2.124 3.478 0.671 4.968 31.811 -4.729 1.060 3.108 8.993 -1.215 32.194 15 AA_G22G23:C45C46_AA A 22 ? A 46 ? A 23 ? A 45 ? 1 A G 23 1_555 A C 45 1_555 A U 24 1_555 A A 31 1_555 -2.174 -1.102 3.370 -0.808 3.501 105.012 -0.744 1.358 3.355 2.206 0.509 105.055 16 AA_G23U24:A31C45_AA A 23 ? A 45 ? A 24 ? A 31 ? 1 A U 24 1_555 A A 31 1_555 A U 25 1_555 A A 29 1_555 -3.104 0.423 3.083 9.569 0.839 -0.696 -5.595 16.572 3.271 -7.501 85.537 -9.631 17 AA_U24U25:A29A31_AA A 24 ? A 31 ? A 25 ? A 29 ? 1 A U 25 1_555 A A 29 1_555 A A 5 1_555 A A 42 1_555 0.278 1.718 2.751 12.737 -1.244 118.939 1.005 -0.057 2.752 -0.721 -7.383 119.360 18 AA_U25A5:A42A29_AA A 25 ? A 29 ? A 5 ? A 42 ? 1 A A 5 1_555 A A 42 1_555 A C 6 1_555 A G 27 1_555 0.051 2.060 7.078 -20.161 32.718 -8.418 -10.096 -4.258 -0.141 -66.497 -40.976 -39.308 19 AA_A5C6:G27A42_AA A 5 ? A 42 ? A 6 ? A 27 ? 1 B A 2 1_555 B U 38 1_555 B G 3 1_555 B C 37 1_555 0.705 -1.401 3.497 -0.326 12.814 40.509 -3.252 -1.008 2.937 17.971 0.457 42.407 20 BB_A2G3:C37U38_BB B 2 ? B 38 ? B 3 ? B 37 ? 1 B G 3 1_555 B C 37 1_555 B U 4 1_555 B G 36 1_555 -0.520 -1.147 3.451 3.003 2.787 45.987 -1.711 0.930 3.341 3.558 -3.835 46.159 21 BB_G3U4:G36C37_BB B 3 ? B 37 ? B 4 ? B 36 ? 1 B U 4 1_555 B G 36 1_555 B C 7 1_555 B G 35 1_555 -3.432 -0.526 2.895 21.827 -3.183 57.069 -0.409 4.144 1.629 -3.203 -21.964 60.847 22 BB_U4C7:G35G36_BB B 4 ? B 36 ? B 7 ? B 35 ? 1 B C 7 1_555 B G 35 1_555 B C 8 1_555 B G 34 1_555 -0.137 -1.682 3.582 -1.912 3.572 36.096 -3.233 -0.067 3.408 5.743 3.074 36.315 23 BB_C7C8:G34G35_BB B 7 ? B 35 ? B 8 ? B 34 ? 1 B C 8 1_555 B G 34 1_555 B U 9 1_555 B G 33 1_555 -0.113 -1.466 3.356 4.450 3.263 39.489 -2.530 0.683 3.199 4.801 -6.547 39.857 24 BB_C8U9:G33G34_BB B 8 ? B 34 ? B 9 ? B 33 ? 1 B U 9 1_555 B G 33 1_555 B C 10 1_555 B G 32 1_555 0.266 -1.982 3.322 3.657 2.714 22.206 -6.015 0.632 3.064 6.952 -9.369 22.663 25 BB_U9C10:G32G33_BB B 9 ? B 33 ? B 10 ? B 32 ? 1 B C 10 1_555 B G 32 1_555 B C 11 1_555 B G 30 1_555 0.278 -1.322 3.037 -1.008 7.185 30.613 -3.626 -0.680 2.656 13.374 1.876 31.441 26 BB_C10C11:G30G32_BB B 10 ? B 32 ? B 11 ? B 30 ? 1 B A 5 1_555 B G 26 1_555 B A 29 1_555 B U 25 1_555 -0.409 -2.990 -2.616 165.289 -39.733 58.537 -1.749 -0.832 -1.020 -20.463 -85.125 171.277 27 BB_A5A29:U25G26_BB B 5 ? B 26 ? B 29 ? B 25 ? 1 B A 29 1_555 B U 25 1_555 B A 31 1_555 B U 24 1_555 3.108 3.012 -0.630 170.876 -3.762 -11.320 -1.548 -0.129 -3.089 1.971 89.529 -170.961 28 BB_A29A31:U24U25_BB B 29 ? B 25 ? B 31 ? B 24 ? 1 B A 31 1_555 B U 24 1_555 B C 45 1_555 B G 23 1_555 -1.748 -3.338 1.953 105.706 -139.434 155.412 -1.489 1.010 2.250 -69.763 -52.888 178.930 29 BB_A31C45:G23U24_BB B 31 ? B 24 ? B 45 ? B 23 ? 1 B C 45 1_555 B G 23 1_555 B C 46 1_555 B G 22 1_555 0.227 -2.089 3.474 -1.698 7.234 33.522 -4.669 -0.650 2.958 12.354 2.900 34.312 30 BB_C45C46:G22G23_BB B 45 ? B 23 ? B 46 ? B 22 ? 1 B C 46 1_555 B G 22 1_555 B U 47 1_555 B A 21 1_555 0.264 -1.506 3.195 1.799 6.157 33.638 -3.470 -0.182 2.892 10.521 -3.074 34.227 31 BB_C46U47:A21G22_BB B 46 ? B 22 ? B 47 ? B 21 ? 1 B U 47 1_555 B A 21 1_555 B G 48 1_555 B C 20 1_555 0.031 -1.945 3.077 3.998 10.519 18.451 -8.512 1.179 1.700 29.513 -11.218 21.586 32 BB_U47G48:C20A21_BB B 47 ? B 21 ? B 48 ? B 20 ? 1 B G 48 1_555 B C 20 1_555 B U 49 1_555 B A 19 1_555 -0.011 -1.715 3.270 0.035 7.471 41.739 -3.101 0.019 2.934 10.385 -0.049 42.373 33 BB_G48U49:A19C20_BB B 48 ? B 20 ? B 49 ? B 19 ? 1 B U 49 1_555 B A 19 1_555 B A 50 1_555 B U 18 1_555 0.636 -1.213 2.923 0.418 11.100 27.488 -4.314 -1.171 2.280 22.242 -0.838 29.607 34 BB_U49A50:U18A19_BB B 49 ? B 19 ? B 50 ? B 18 ? 1 B A 50 1_555 B U 18 1_555 B G 51 1_555 B C 17 1_555 0.232 -1.448 3.231 0.730 9.509 32.550 -3.905 -0.290 2.717 16.527 -1.269 33.882 35 BB_A50G51:C17U18_BB B 50 ? B 18 ? B 51 ? B 17 ? 1 B G 51 1_555 B C 17 1_555 B G 52 1_555 B C 16 1_555 -0.212 -1.929 3.530 3.228 0.604 36.383 -3.168 0.816 3.468 0.965 -5.156 36.526 36 BB_G51G52:C16C17_BB B 51 ? B 17 ? B 52 ? B 16 ? 1 B G 52 1_555 B C 16 1_555 B C 53 1_555 B G 14 1_555 -1.002 -2.994 3.161 5.267 3.655 11.689 -15.861 8.586 1.561 16.424 -23.670 13.327 37 BB_G52C53:G14C16_BB B 52 ? B 16 ? B 53 ? B 14 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' DGE-2036197 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM150778 2 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 7jju '(chain A)res 7, 21-29, 32 (chain B)res 44-49' 2 ? 'experimental model' PDB 6d3p '(chain A)res 7, 18-26, 28 (chain B)res 40-45' # _atom_sites.entry_id 9CFN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.009290 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002251 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023589 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012178 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H IR MG N O P # loop_ # loop_ #