HEADER TRANSFERASE 01-JUL-24 9CGW TITLE STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM) AND RIPP PRECURSOR TITLE 2 (SONA-I65W) HETEROMERIC COMPLEX (NO COFACTOR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TP-METHYLASE FAMILY PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: EXTRADIOL RING-CLEAVAGE DIOXYGENASE LIGAB LIGA SUBUNIT COMPND 7 DOMAIN-CONTAINING PROTEIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 GENE: SO_1478; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 9 ORGANISM_TAXID: 70863; SOURCE 10 GENE: SO_1479; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-N-METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.CRONE,J.W.LABONTE,M.ELIAS,M.F.FREEMAN REVDAT 1 29-JAN-25 9CGW 0 JRNL AUTH K.K.CRONE,J.W.LABONTE,M.H.ELIAS,M.F.FREEMAN JRNL TITL ALPHA-N-METHYLTRANSFERASE REGIOSPECIFICITY IS MEDIATED BY JRNL TITL 2 PROXIMAL, REDUNDANT ENZYME-SUBSTRATE INTERACTIONS. JRNL REF PROTEIN SCI. V. 34 70021 2025 JRNL REFN ESSN 1469-896X JRNL PMID 39840790 JRNL DOI 10.1002/PRO.70021 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 21865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1151 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 1.38000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.800 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.356 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.312 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4883 ; 0.001 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4647 ; 0.000 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6635 ; 0.574 ; 1.813 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10702 ; 0.190 ; 1.742 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 4.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 9.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;12.713 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 750 ; 0.026 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5715 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1085 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2444 ; 4.067 ; 5.435 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2444 ; 4.067 ; 5.436 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3045 ; 6.174 ; 9.755 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3046 ; 6.176 ; 9.757 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2439 ; 5.378 ; 6.038 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2440 ; 5.377 ; 6.040 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3590 ; 8.453 ;10.827 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5468 ;11.887 ;53.260 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5469 ;11.899 ;53.270 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 38.650 -10.304 -9.863 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.0504 REMARK 3 T33: 0.0224 T12: -0.0401 REMARK 3 T13: -0.0165 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.4735 L22: 0.2902 REMARK 3 L33: 0.8596 L12: 0.0252 REMARK 3 L13: 0.0305 L23: 0.2391 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.0039 S13: 0.0414 REMARK 3 S21: 0.0108 S22: 0.0247 S23: 0.0690 REMARK 3 S31: -0.0063 S32: -0.0290 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): 29.686 -21.876 13.624 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.0607 REMARK 3 T33: 0.0329 T12: -0.0386 REMARK 3 T13: 0.0026 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 5.4033 L22: 2.9656 REMARK 3 L33: 2.6139 L12: 0.1323 REMARK 3 L13: 0.9010 L23: -0.5414 REMARK 3 S TENSOR REMARK 3 S11: 0.1020 S12: 0.1317 S13: 0.2280 REMARK 3 S21: 0.0113 S22: -0.0624 S23: 0.2629 REMARK 3 S31: -0.1205 S32: -0.0354 S33: -0.0396 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 260 REMARK 3 ORIGIN FOR THE GROUP (A): 55.045 -20.338 -11.733 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.0535 REMARK 3 T33: 0.0554 T12: -0.0223 REMARK 3 T13: 0.0025 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.5937 L22: 0.6467 REMARK 3 L33: 0.3865 L12: -0.1114 REMARK 3 L13: -0.0880 L23: -0.0443 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.0132 S13: -0.0183 REMARK 3 S21: -0.0332 S22: 0.0064 S23: -0.1732 REMARK 3 S31: 0.0131 S32: 0.0814 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 11 D 54 REMARK 3 ORIGIN FOR THE GROUP (A): 69.440 -5.702 7.243 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.0969 REMARK 3 T33: 0.3112 T12: -0.0414 REMARK 3 T13: -0.0506 T23: -0.0866 REMARK 3 L TENSOR REMARK 3 L11: 6.5762 L22: 1.6816 REMARK 3 L33: 1.1681 L12: -1.2574 REMARK 3 L13: -0.2995 L23: -0.0709 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.1184 S13: 0.8503 REMARK 3 S21: -0.0129 S22: 0.2414 S23: -0.6093 REMARK 3 S31: 0.0977 S32: 0.1402 S33: -0.2255 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9CGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 240 MM SODIUM MALONATE PH 5.5 WITH 10% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.44667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.72333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.72333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.44667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 60 REMARK 465 ASN A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 GLY A 263 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 55 REMARK 465 ASP B 56 REMARK 465 SER B 57 REMARK 465 SER B 58 REMARK 465 TYR B 59 REMARK 465 GLN B 60 REMARK 465 SER B 61 REMARK 465 TYR B 62 REMARK 465 LEU B 63 REMARK 465 VAL B 64 REMARK 465 TRP B 65 REMARK 465 SER B 66 REMARK 465 HIS B 67 REMARK 465 GLY B 68 REMARK 465 ASN B 69 REMARK 465 GLY B 70 REMARK 465 ASP B 71 REMARK 465 MET C 1 REMARK 465 TYR C 58 REMARK 465 ALA C 59 REMARK 465 GLN C 60 REMARK 465 ASN C 61 REMARK 465 GLY C 62 REMARK 465 GLU C 63 REMARK 465 VAL C 64 REMARK 465 ASP C 261 REMARK 465 LEU C 262 REMARK 465 GLY C 263 REMARK 465 MET D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLY D 3 REMARK 465 GLY D 55 REMARK 465 ASP D 56 REMARK 465 SER D 57 REMARK 465 SER D 58 REMARK 465 TYR D 59 REMARK 465 GLN D 60 REMARK 465 SER D 61 REMARK 465 TYR D 62 REMARK 465 LEU D 63 REMARK 465 VAL D 64 REMARK 465 TRP D 65 REMARK 465 SER D 66 REMARK 465 HIS D 67 REMARK 465 GLY D 68 REMARK 465 ASN D 69 REMARK 465 GLY D 70 REMARK 465 ASP D 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 -57.49 82.69 REMARK 500 GLN A 16 48.67 -107.70 REMARK 500 LEU A 34 70.52 -150.79 REMARK 500 PRO A 36 -73.18 -74.09 REMARK 500 ASN A 48 116.52 -163.29 REMARK 500 LYS A 87 91.55 -67.50 REMARK 500 ALA A 100 84.76 -156.58 REMARK 500 HIS A 142 130.48 -173.09 REMARK 500 PRO A 241 154.93 -49.36 REMARK 500 LEU B 53 59.06 -104.40 REMARK 500 ALA C 14 -43.19 70.70 REMARK 500 LEU C 34 62.02 -155.20 REMARK 500 PRO C 36 -70.27 -79.45 REMARK 500 THR C 177 -41.87 -139.99 REMARK 500 TRP C 196 -36.54 -132.45 REMARK 500 PRO C 259 82.30 -32.40 REMARK 500 ASN D 24 74.82 -156.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 67 0.09 SIDE CHAIN REMARK 500 ARG A 68 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 126 OE2 REMARK 620 2 HIS A 142 NE2 89.2 REMARK 620 3 GLU C 126 OE2 90.4 174.9 REMARK 620 4 HIS C 142 NE2 124.7 84.5 91.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LTE RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM) AND RIPP REMARK 900 PRECURSOR (SONA) HETEROMERIC COMPLEX (WITH SAH) REMARK 900 RELATED ID: 7LTF RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM MUTANT Y58F) AND REMARK 900 RIPP PRECURSOR (SONA) HETEROMERIC COMPLEX (NO COFACTOR) REMARK 900 RELATED ID: 7LTH RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM MUTANT Y93F) AND REMARK 900 RIPP PRECURSOR (SONA) HETEROMERIC COMPLEX (NO COFACTOR) REMARK 900 RELATED ID: 7LTR RELATED DB: PDB REMARK 900 STRUCTURE OF THE HETEROMERIC COMPLEX BETWEEN THE ALPHA-N- REMARK 900 METHYLTRANSFERASE (SONM) AND A TRUNCATED CONSTRUCT OF THE RIPP REMARK 900 PRECURSOR (SONA) (WITH SAM) REMARK 900 RELATED ID: 7LTS RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM MUTANT R67A) AND REMARK 900 RIPP PRECURSOR (SONA) HETEROMERIC COMPLEX (WITH SAH) REMARK 900 RELATED ID: 8T1T RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM) AND RIPP REMARK 900 PRECURSOR (SONA WITH QSY DELETION) HETEROMERIC COMPLEX (BOUND TO REMARK 900 SAM) REMARK 900 RELATED ID: 8T1S RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM) AND RIPP REMARK 900 PRECURSOR (SONA WITH QSY DELETION) HETEROMERIC COMPLEX (BOUND TO REMARK 900 SAH) DBREF 9CGW A 1 263 UNP Q8EGW3 Q8EGW3_SHEON 1 263 DBREF 9CGW B 1 71 UNP Q8EGW2 Q8EGW2_SHEON 1 71 DBREF 9CGW C 1 263 UNP Q8EGW3 Q8EGW3_SHEON 1 263 DBREF 9CGW D 1 71 UNP Q8EGW2 Q8EGW2_SHEON 1 71 SEQADV 9CGW MET B -6 UNP Q8EGW2 INITIATING METHIONINE SEQADV 9CGW HIS B -5 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS B -4 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS B -3 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS B -2 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS B -1 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS B 0 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW TRP B 65 UNP Q8EGW2 ILE 65 ENGINEERED MUTATION SEQADV 9CGW MET D -6 UNP Q8EGW2 INITIATING METHIONINE SEQADV 9CGW HIS D -5 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS D -4 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS D -3 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS D -2 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS D -1 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW HIS D 0 UNP Q8EGW2 EXPRESSION TAG SEQADV 9CGW TRP D 65 UNP Q8EGW2 ILE 65 ENGINEERED MUTATION SEQRES 1 A 263 MET GLY SER LEU VAL CYS VAL GLY THR GLY LEU GLN LEU SEQRES 2 A 263 ALA GLY GLN ILE SER VAL LEU SER ARG SER TYR ILE GLU SEQRES 3 A 263 HIS ALA ASP ILE VAL PHE SER LEU LEU PRO ASP GLY PHE SEQRES 4 A 263 SER GLN ARG TRP LEU THR LYS LEU ASN PRO ASN VAL ILE SEQRES 5 A 263 ASN LEU GLN GLN PHE TYR ALA GLN ASN GLY GLU VAL LYS SEQRES 6 A 263 ASN ARG ARG ASP THR TYR GLU GLN MET VAL ASN ALA ILE SEQRES 7 A 263 LEU ASP ALA VAL ARG ALA GLY LYS LYS THR VAL CYS ALA SEQRES 8 A 263 LEU TYR GLY HIS PRO GLY VAL PHE ALA CYS VAL SER HIS SEQRES 9 A 263 MET ALA ILE THR ARG ALA LYS ALA GLU GLY PHE SER ALA SEQRES 10 A 263 LYS MET GLU PRO GLY ILE SER ALA GLU ALA CYS LEU TRP SEQRES 11 A 263 ALA ASP LEU GLY ILE ASP PRO GLY ASN SER GLY HIS GLN SEQRES 12 A 263 SER PHE GLU ALA SER GLN PHE MET PHE PHE ASN HIS VAL SEQRES 13 A 263 PRO ASP PRO THR THR HIS LEU LEU LEU TRP GLN ILE ALA SEQRES 14 A 263 ILE ALA GLY GLU HIS THR LEU THR GLN PHE HIS THR SER SEQRES 15 A 263 SER ASP ARG LEU GLN ILE LEU VAL GLU GLN LEU ASN GLN SEQRES 16 A 263 TRP TYR PRO LEU ASP HIS GLU VAL VAL ILE TYR GLU ALA SEQRES 17 A 263 ALA ASN LEU PRO ILE GLN ALA PRO ARG ILE GLU ARG LEU SEQRES 18 A 263 PRO LEU ALA ASN LEU PRO GLN ALA HIS LEU MET PRO ILE SEQRES 19 A 263 SER THR LEU LEU ILE PRO PRO ALA LYS LYS LEU GLU TYR SEQRES 20 A 263 ASN TYR ALA ILE LEU ALA LYS LEU GLY ILE GLY PRO GLU SEQRES 21 A 263 ASP LEU GLY SEQRES 1 B 78 MET HIS HIS HIS HIS HIS HIS MET SER GLY LEU SER ASP SEQRES 2 B 78 PHE PHE THR GLN LEU GLY GLN ASP ALA GLN LEU MET GLU SEQRES 3 B 78 ASP TYR LYS GLN ASN PRO GLU ALA VAL MET ARG ALA HIS SEQRES 4 B 78 GLY LEU THR ASP GLU GLN ILE ASN ALA VAL MET THR GLY SEQRES 5 B 78 ASP MET GLU LYS LEU LYS THR LEU SER GLY ASP SER SER SEQRES 6 B 78 TYR GLN SER TYR LEU VAL TRP SER HIS GLY ASN GLY ASP SEQRES 1 C 263 MET GLY SER LEU VAL CYS VAL GLY THR GLY LEU GLN LEU SEQRES 2 C 263 ALA GLY GLN ILE SER VAL LEU SER ARG SER TYR ILE GLU SEQRES 3 C 263 HIS ALA ASP ILE VAL PHE SER LEU LEU PRO ASP GLY PHE SEQRES 4 C 263 SER GLN ARG TRP LEU THR LYS LEU ASN PRO ASN VAL ILE SEQRES 5 C 263 ASN LEU GLN GLN PHE TYR ALA GLN ASN GLY GLU VAL LYS SEQRES 6 C 263 ASN ARG ARG ASP THR TYR GLU GLN MET VAL ASN ALA ILE SEQRES 7 C 263 LEU ASP ALA VAL ARG ALA GLY LYS LYS THR VAL CYS ALA SEQRES 8 C 263 LEU TYR GLY HIS PRO GLY VAL PHE ALA CYS VAL SER HIS SEQRES 9 C 263 MET ALA ILE THR ARG ALA LYS ALA GLU GLY PHE SER ALA SEQRES 10 C 263 LYS MET GLU PRO GLY ILE SER ALA GLU ALA CYS LEU TRP SEQRES 11 C 263 ALA ASP LEU GLY ILE ASP PRO GLY ASN SER GLY HIS GLN SEQRES 12 C 263 SER PHE GLU ALA SER GLN PHE MET PHE PHE ASN HIS VAL SEQRES 13 C 263 PRO ASP PRO THR THR HIS LEU LEU LEU TRP GLN ILE ALA SEQRES 14 C 263 ILE ALA GLY GLU HIS THR LEU THR GLN PHE HIS THR SER SEQRES 15 C 263 SER ASP ARG LEU GLN ILE LEU VAL GLU GLN LEU ASN GLN SEQRES 16 C 263 TRP TYR PRO LEU ASP HIS GLU VAL VAL ILE TYR GLU ALA SEQRES 17 C 263 ALA ASN LEU PRO ILE GLN ALA PRO ARG ILE GLU ARG LEU SEQRES 18 C 263 PRO LEU ALA ASN LEU PRO GLN ALA HIS LEU MET PRO ILE SEQRES 19 C 263 SER THR LEU LEU ILE PRO PRO ALA LYS LYS LEU GLU TYR SEQRES 20 C 263 ASN TYR ALA ILE LEU ALA LYS LEU GLY ILE GLY PRO GLU SEQRES 21 C 263 ASP LEU GLY SEQRES 1 D 78 MET HIS HIS HIS HIS HIS HIS MET SER GLY LEU SER ASP SEQRES 2 D 78 PHE PHE THR GLN LEU GLY GLN ASP ALA GLN LEU MET GLU SEQRES 3 D 78 ASP TYR LYS GLN ASN PRO GLU ALA VAL MET ARG ALA HIS SEQRES 4 D 78 GLY LEU THR ASP GLU GLN ILE ASN ALA VAL MET THR GLY SEQRES 5 D 78 ASP MET GLU LYS LEU LYS THR LEU SER GLY ASP SER SER SEQRES 6 D 78 TYR GLN SER TYR LEU VAL TRP SER HIS GLY ASN GLY ASP HET ZN C 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *15(H2 O) HELIX 1 AA1 SER A 18 HIS A 27 1 10 HELIX 2 AA2 ASP A 37 ASN A 48 1 12 HELIX 3 AA3 GLN A 55 TYR A 58 5 4 HELIX 4 AA4 ASN A 66 GLY A 85 1 20 HELIX 5 AA5 ALA A 100 GLU A 113 1 14 HELIX 6 AA6 SER A 124 GLY A 134 1 11 HELIX 7 AA7 ALA A 147 PHE A 153 1 7 HELIX 8 AA8 THR A 181 ASN A 194 1 14 HELIX 9 AA9 ALA A 224 ALA A 229 5 6 HELIX 10 AB1 ASN A 248 GLY A 256 1 9 HELIX 11 AB2 GLY A 258 LEU A 262 5 5 HELIX 12 AB3 LEU B 4 ASP B 14 1 11 HELIX 13 AB4 ASP B 14 ASN B 24 1 11 HELIX 14 AB5 ASN B 24 HIS B 32 1 9 HELIX 15 AB6 THR B 35 GLY B 45 1 11 HELIX 16 AB7 SER C 18 ALA C 28 1 11 HELIX 17 AB8 ASP C 37 ASN C 48 1 12 HELIX 18 AB9 GLN C 55 PHE C 57 5 3 HELIX 19 AC1 ASN C 66 ALA C 84 1 19 HELIX 20 AC2 ALA C 100 ALA C 112 1 13 HELIX 21 AC3 SER C 124 LEU C 133 1 10 HELIX 22 AC4 ASP C 136 GLY C 141 1 6 HELIX 23 AC5 ALA C 147 PHE C 153 1 7 HELIX 24 AC6 ILE C 168 ALA C 171 5 4 HELIX 25 AC7 THR C 181 ASN C 194 1 14 HELIX 26 AC8 ALA C 224 LEU C 226 5 3 HELIX 27 AC9 ASN C 248 GLY C 256 1 9 HELIX 28 AD1 SER D 5 ASP D 14 1 10 HELIX 29 AD2 ASP D 14 ASN D 24 1 11 HELIX 30 AD3 ASN D 24 GLY D 33 1 10 HELIX 31 AD4 THR D 35 GLY D 45 1 11 HELIX 32 AD5 LYS D 49 SER D 54 1 6 SHEET 1 AA1 5 VAL A 51 ASN A 53 0 SHEET 2 AA1 5 ILE A 30 LEU A 34 1 N VAL A 31 O ILE A 52 SHEET 3 AA1 5 LYS A 87 LEU A 92 1 O ALA A 91 N PHE A 32 SHEET 4 AA1 5 SER A 3 GLY A 8 1 N VAL A 7 O CYS A 90 SHEET 5 AA1 5 SER A 116 MET A 119 1 O SER A 116 N LEU A 4 SHEET 1 AA210 ARG A 217 PRO A 222 0 SHEET 2 AA210 GLU A 202 GLU A 207 -1 N VAL A 203 O LEU A 221 SHEET 3 AA210 THR A 236 ILE A 239 -1 O THR A 236 N TYR A 206 SHEET 4 AA210 HIS A 162 TRP A 166 -1 N LEU A 165 O LEU A 237 SHEET 5 AA210 HIS A 142 GLU A 146 1 N GLN A 143 O LEU A 164 SHEET 6 AA210 HIS C 142 GLU C 146 -1 O HIS C 142 N SER A 144 SHEET 7 AA210 HIS C 162 TRP C 166 1 O LEU C 164 N GLN C 143 SHEET 8 AA210 THR C 236 ILE C 239 -1 O ILE C 239 N LEU C 163 SHEET 9 AA210 GLU C 202 GLU C 207 -1 N VAL C 204 O LEU C 238 SHEET 10 AA210 ARG C 217 PRO C 222 -1 O GLU C 219 N ILE C 205 SHEET 1 AA3 5 VAL C 51 ASN C 53 0 SHEET 2 AA3 5 ILE C 30 LEU C 34 1 N VAL C 31 O ILE C 52 SHEET 3 AA3 5 LYS C 87 LEU C 92 1 O VAL C 89 N PHE C 32 SHEET 4 AA3 5 SER C 3 GLY C 8 1 N SER C 3 O THR C 88 SHEET 5 AA3 5 SER C 116 MET C 119 1 O SER C 116 N LEU C 4 LINK OE2 GLU A 126 ZN ZN C 301 1555 1555 2.30 LINK NE2 HIS A 142 ZN ZN C 301 1555 1555 2.32 LINK OE2 GLU C 126 ZN ZN C 301 1555 1555 2.21 LINK NE2 HIS C 142 ZN ZN C 301 1555 1555 2.31 CRYST1 91.810 91.810 161.170 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010892 0.006289 0.000000 0.00000 SCALE2 0.000000 0.012577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006205 0.00000