HEADER DE NOVO PROTEIN 03-JUL-24 9CIF TITLE SOLUTION NMR STRUCTURE OF A SINGLE-STATE DE NOVO ALTERNATIVE TITLE 2 CONFORMATION (DESIGN 6306) OF THE N-TERMINAL DOMAIN OF CHICKEN TITLE 3 TROPONIN C (E41A MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED TROPONIN C 6306; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS EF HAND, TROPONIN, DE NOVO DESIGN, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.B.GUO,M.J.S.KELLY,T.KORTEMME REVDAT 3 18-JUN-25 9CIF 1 JRNL REVDAT 2 04-JUN-25 9CIF 1 JRNL REVDAT 1 21-MAY-25 9CIF 0 JRNL AUTH A.B.GUO,D.AKPINAROGLU,C.A.STEPHENS,M.GRABE,C.A.SMITH, JRNL AUTH 2 M.J.S.KELLY,T.KORTEMME JRNL TITL DEEP LEARNING-GUIDED DESIGN OF DYNAMIC PROTEINS. JRNL REF SCIENCE V. 388 R7094 2025 JRNL REFN ESSN 1095-9203 JRNL PMID 40403060 JRNL DOI 10.1126/SCIENCE.ADR7094 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 3.7 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING AND MOLECULAR REMARK 3 DYNAMICS REMARK 4 REMARK 4 9CIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000284898. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.1 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 400 UM [U-99% 13C; U-99% 15N] REMARK 210 SINGLE-STATE DESIGN 6306, 100 MM REMARK 210 POTASSIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 2D HBCBCGCDHD; REMARK 210 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARTINA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 ASP A 34 64.45 -100.82 REMARK 500 4 ASP A 34 78.65 -114.26 REMARK 500 6 SER A 6 -73.11 67.60 REMARK 500 6 MET A 7 -23.85 -166.54 REMARK 500 7 ASP A 72 -53.68 -121.34 REMARK 500 8 ASP A 34 62.21 -105.12 REMARK 500 9 SER A 6 -42.26 -174.52 REMARK 500 10 SER A 74 -39.61 -132.34 REMARK 500 11 ASP A 34 78.95 -114.37 REMARK 500 13 SER A 8 33.16 -86.80 REMARK 500 13 PRO A 56 109.93 -54.58 REMARK 500 13 ASP A 72 -80.98 -90.60 REMARK 500 14 SER A 6 164.95 68.14 REMARK 500 14 ASP A 34 62.63 -112.55 REMARK 500 15 SER A 8 21.43 -76.67 REMARK 500 15 PRO A 56 107.20 -51.54 REMARK 500 15 ASP A 72 -60.69 -107.82 REMARK 500 16 SER A 6 98.97 -64.56 REMARK 500 16 MET A 7 -57.52 -142.39 REMARK 500 16 SER A 8 15.94 -154.14 REMARK 500 17 ASP A 34 72.33 -102.96 REMARK 500 17 ASP A 72 -110.21 -96.72 REMARK 500 18 MET A 7 -83.55 69.48 REMARK 500 18 SER A 74 -50.01 -120.08 REMARK 500 19 SER A 74 -55.98 73.45 REMARK 500 20 ASP A 72 -70.84 -122.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31185 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF A SINGLE-STATE DE NOVO ALTERNATIVE REMARK 900 CONFORMATION (DESIGN 6306) OF THE N-TERMINAL DOMAIN OF CHICKEN REMARK 900 TROPONIN C (E41A MUTANT) DBREF 9CIF A 1 94 PDB 9CIF 9CIF 1 94 SEQRES 1 A 94 GLY SER HIS MET ALA SER MET SER ASP GLU GLN ALA GLU SEQRES 2 A 94 ALA ARG ALA PHE LEU SER GLU GLU MET ILE ALA GLU PHE SEQRES 3 A 94 LYS ALA ALA PHE ASP MET PHE ASP ALA ASP GLY GLY GLY SEQRES 4 A 94 GLU ILE SER ALA LYS ALA PHE GLY THR VAL ALA ARG MET SEQRES 5 A 94 ASN ASN VAL PRO VAL ASP PRO ARG VAL GLN GLU TYR VAL SEQRES 6 A 94 LYS ARG LEU THR ASP GLN ASP GLY SER GLY THR ILE SER SEQRES 7 A 94 PHE GLU GLU PHE LEU VAL LEU MET VAL LYS SER MET LYS SEQRES 8 A 94 GLN ASP ALA HELIX 1 AA1 MET A 7 LEU A 18 1 12 HELIX 2 AA2 SER A 19 ASP A 34 1 16 HELIX 3 AA3 ALA A 43 ASN A 53 1 11 HELIX 4 AA4 ASP A 58 GLY A 73 1 16 HELIX 5 AA5 PHE A 79 ASP A 93 1 15 SHEET 1 AA1 2 GLU A 40 SER A 42 0 SHEET 2 AA1 2 THR A 76 SER A 78 -1 O ILE A 77 N ILE A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 144 0 0 5 2 0 0 6 689 1 0 8 END