HEADER HYDROLASE 03-JUL-24 9CIK TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS TITLE 2 V23R/L36D AT CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TNASE,MICROCOCCAL NUCLEASE,STAPHYLOCOCCAL NUCLEASE; COMPND 5 EC: 3.1.31.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: NUC, SACOL0860; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STAPHYLOCOCCAL NUCLEASE, ARGININE, ION PAIR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,J.L.SCHLESSMAN,M.A.SIEGLER,B.GARCIA-MORENO E. REVDAT 1 07-AUG-24 9CIK 0 JRNL AUTH Y.ZHANG,J.L.SCHLESSMAN,A.C.ROBINSON,B.GARCIA-MORENO E. JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+PHS V23R/L36D AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 489 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.48000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 2.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1103 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1081 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1491 ; 1.776 ; 1.877 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2498 ; 0.590 ; 1.808 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 136 ; 6.109 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ; 7.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 214 ;16.277 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 162 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1260 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 242 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 523 ; 0.963 ; 0.902 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 523 ; 0.954 ; 0.901 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 654 ; 1.481 ; 1.612 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 655 ; 1.484 ; 1.614 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 580 ; 2.185 ; 1.215 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 581 ; 2.183 ; 1.216 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 834 ; 3.251 ; 2.116 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4782 ; 5.962 ;12.560 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4696 ; 5.844 ;11.790 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 10.242 -5.993 1.468 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.0415 REMARK 3 T33: 0.2200 T12: -0.0195 REMARK 3 T13: 0.0612 T23: -0.0789 REMARK 3 L TENSOR REMARK 3 L11: 11.5244 L22: 9.0521 REMARK 3 L33: 7.6660 L12: -4.2362 REMARK 3 L13: 1.2966 L23: -3.4346 REMARK 3 S TENSOR REMARK 3 S11: 0.0749 S12: 0.4136 S13: -1.3352 REMARK 3 S21: -0.0790 S22: -0.0917 S23: 0.4112 REMARK 3 S31: 0.7426 S32: -0.1829 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 15.741 -1.697 5.556 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.2109 REMARK 3 T33: 0.1435 T12: 0.0417 REMARK 3 T13: 0.0442 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 5.2705 L22: 4.0454 REMARK 3 L33: 6.6863 L12: -1.6990 REMARK 3 L13: -0.9248 L23: 5.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.2440 S12: 0.0015 S13: -0.5623 REMARK 3 S21: 0.4395 S22: 0.1864 S23: 0.1660 REMARK 3 S31: 0.5071 S32: 0.2886 S33: 0.0576 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 16.794 -2.583 0.349 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.3302 REMARK 3 T33: 0.2931 T12: -0.0223 REMARK 3 T13: 0.0900 T23: -0.1507 REMARK 3 L TENSOR REMARK 3 L11: 3.8344 L22: 6.6470 REMARK 3 L33: 0.0077 L12: -4.9407 REMARK 3 L13: 0.0716 L23: -0.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.1757 S13: -0.2470 REMARK 3 S21: 0.0052 S22: 0.0496 S23: 0.1014 REMARK 3 S31: 0.0260 S32: -0.0344 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 10.037 3.448 9.102 REMARK 3 T TENSOR REMARK 3 T11: 0.2603 T22: 0.1898 REMARK 3 T33: 0.0708 T12: -0.0020 REMARK 3 T13: 0.0523 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 7.9574 L22: 2.6664 REMARK 3 L33: 1.2322 L12: -2.3680 REMARK 3 L13: 0.2840 L23: 1.2395 REMARK 3 S TENSOR REMARK 3 S11: -0.2642 S12: -0.4787 S13: -0.0525 REMARK 3 S21: 0.2424 S22: 0.1994 S23: 0.2715 REMARK 3 S31: 0.1040 S32: 0.0340 S33: 0.0648 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 11.964 2.326 -0.100 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.2233 REMARK 3 T33: 0.0617 T12: 0.0092 REMARK 3 T13: 0.0388 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 8.9705 L22: 3.8822 REMARK 3 L33: 1.5707 L12: -0.1618 REMARK 3 L13: -0.5495 L23: -0.7228 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.7364 S13: -0.2712 REMARK 3 S21: -0.1178 S22: -0.1277 S23: 0.1138 REMARK 3 S31: 0.0943 S32: 0.0336 S33: 0.0765 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 2.940 11.079 3.669 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.1586 REMARK 3 T33: 0.2810 T12: -0.0179 REMARK 3 T13: 0.0195 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 8.2264 L22: 3.8508 REMARK 3 L33: 1.8368 L12: -2.4932 REMARK 3 L13: -0.6278 L23: 1.3109 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.3366 S13: 0.6308 REMARK 3 S21: -0.0597 S22: 0.0171 S23: 0.5506 REMARK 3 S31: 0.0352 S32: -0.1277 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 0.478 16.808 15.873 REMARK 3 T TENSOR REMARK 3 T11: 0.2797 T22: 0.3703 REMARK 3 T33: 0.4498 T12: 0.1291 REMARK 3 T13: 0.1135 T23: -0.2135 REMARK 3 L TENSOR REMARK 3 L11: 27.3020 L22: 9.3070 REMARK 3 L33: 8.4654 L12: 12.3404 REMARK 3 L13: 9.1456 L23: -0.3535 REMARK 3 S TENSOR REMARK 3 S11: -0.1749 S12: -0.9308 S13: 2.3143 REMARK 3 S21: 0.4728 S22: -0.4419 S23: 1.1588 REMARK 3 S31: -0.6866 S32: -0.3000 S33: 0.6169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9CIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : AGILENT SUPERNOVA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT ATLAS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO 42.49 64-BIT REMARK 200 (RELEASE 15-03-2022) REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO 42.49 64-BIT REMARK 200 (RELEASE 15-03-2022) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10282 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.01600 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 53.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14800 REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 FOR SHELL : 5.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% MPD, 25 MM POTASSIUM PHOSPHATE, PH REMARK 280 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.19100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -68.51 -121.07 REMARK 500 TYR A 54 -5.58 85.68 REMARK 500 ASN A 119 28.42 -142.10 REMARK 500 ASN A 138 -96.71 46.97 REMARK 500 TRP A 140 30.23 -93.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD2 REMARK 620 2 ASP A 40 OD1 83.6 REMARK 620 3 THR A 41 O 91.2 77.0 REMARK 620 4 HOH A 302 O 157.7 107.7 109.8 REMARK 620 5 HOH A 305 O 71.5 132.6 140.8 87.1 REMARK 620 6 HOH A 328 O 83.3 142.1 67.9 97.5 75.1 REMARK 620 N 1 2 3 4 5 DBREF 9CIK A 1 149 UNP Q5HHM4 NUC_STAAC 80 228 SEQADV 9CIK ARG A 23 UNP Q5HHM4 VAL 102 ENGINEERED MUTATION SEQADV 9CIK ASP A 36 UNP Q5HHM4 LEU 115 ENGINEERED MUTATION SEQADV 9CIK PHE A 50 UNP Q5HHM4 THR 123 CONFLICT SEQADV 9CIK ASN A 51 UNP Q5HHM4 LYS 124 CONFLICT SEQADV 9CIK A UNP Q5HHM4 HIS 125 DELETION SEQADV 9CIK A UNP Q5HHM4 PRO 126 DELETION SEQADV 9CIK A UNP Q5HHM4 LYS 127 DELETION SEQADV 9CIK A UNP Q5HHM4 LYS 128 DELETION SEQADV 9CIK A UNP Q5HHM4 GLY 129 DELETION SEQADV 9CIK A UNP Q5HHM4 VAL 130 DELETION SEQADV 9CIK GLY A 117 UNP Q5HHM4 PRO 196 CONFLICT SEQADV 9CIK ALA A 128 UNP Q5HHM4 SER 207 CONFLICT SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR ARG LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG ASP LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET THP A 201 25 HET CA A 202 1 HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 THP C10 H16 N2 O11 P2 FORMUL 3 CA CA 2+ FORMUL 4 HOH *103(H2 O) HELIX 1 AA1 TYR A 54 ASN A 68 1 15 HELIX 2 AA2 VAL A 99 GLN A 106 1 8 HELIX 3 AA3 HIS A 121 GLU A 135 1 15 HELIX 4 AA4 LEU A 137 SER A 141 5 5 SHEET 1 AA1 7 LYS A 97 MET A 98 0 SHEET 2 AA1 7 GLY A 88 ALA A 94 -1 N ALA A 94 O LYS A 97 SHEET 3 AA1 7 ILE A 72 GLU A 75 -1 N GLU A 75 O TYR A 91 SHEET 4 AA1 7 LYS A 9 ALA A 17 -1 N GLU A 10 O VAL A 74 SHEET 5 AA1 7 THR A 22 TYR A 27 -1 O LYS A 24 N LYS A 16 SHEET 6 AA1 7 GLN A 30 ASP A 36 -1 O PHE A 34 N ARG A 23 SHEET 7 AA1 7 GLY A 88 ALA A 94 1 O GLY A 88 N ARG A 35 SHEET 1 AA2 2 VAL A 39 ASP A 40 0 SHEET 2 AA2 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 LINK OD2 ASP A 21 CA CA A 202 1555 1555 2.93 LINK OD1 ASP A 40 CA CA A 202 1555 1555 2.72 LINK O THR A 41 CA CA A 202 1555 1555 2.71 LINK CA CA A 202 O HOH A 302 1555 1555 2.62 LINK CA CA A 202 O HOH A 305 1555 1555 2.73 LINK CA CA A 202 O HOH A 328 1555 1555 2.86 CRYST1 30.875 60.382 38.196 90.00 94.06 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032389 0.000000 0.002299 0.00000 SCALE2 0.000000 0.016561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026247 0.00000 CONECT 113 1082 CONECT 272 1082 CONECT 277 1082 CONECT 1057 1058 1059 1060 1065 CONECT 1058 1057 CONECT 1059 1057 CONECT 1060 1057 CONECT 1061 1062 1063 1064 1070 CONECT 1062 1061 CONECT 1063 1061 CONECT 1064 1061 CONECT 1065 1057 1066 CONECT 1066 1065 1067 CONECT 1067 1066 1068 1069 CONECT 1068 1067 1072 CONECT 1069 1067 1070 1071 CONECT 1070 1061 1069 CONECT 1071 1069 1072 CONECT 1072 1068 1071 1073 CONECT 1073 1072 1074 1081 CONECT 1074 1073 1075 1076 CONECT 1075 1074 CONECT 1076 1074 1077 CONECT 1077 1076 1078 1079 CONECT 1078 1077 CONECT 1079 1077 1080 1081 CONECT 1080 1079 CONECT 1081 1073 1079 CONECT 1082 113 272 277 1084 CONECT 1082 1087 1110 CONECT 1084 1082 CONECT 1087 1082 CONECT 1110 1082 MASTER 412 0 2 4 9 0 0 6 1166 1 33 11 END