data_9CIY # _entry.id 9CIY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9CIY pdb_00009ciy 10.2210/pdb9ciy/pdb WWPDB D_1000285606 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-07-09 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9CIY _pdbx_database_status.recvd_initial_deposition_date 2024-07-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email lyatsun1@swarthmore.edu _pdbx_contact_author.name_first Liliya _pdbx_contact_author.name_last Yatsunyk _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3946-0939 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xing, E.R.' 1 0000-0002-5248-142X 'Yatsunyk, L.A.' 2 0000-0003-3946-0939 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of a left-right-handed G-quadruplex from the promoter of the NSD1 gene' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xing, E.R.' 1 0000-0002-5248-142X primary 'Yatsunyk, L.A.' 2 0000-0003-3946-0939 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (25-MER)' 8264.264 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 3 ? ? ? ? 4 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 5 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 6 ? ? ? ? 6 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DT)(DG)(DG)(DT)(DG)(DG)(DT)(DG)(DG)(DT)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DG)(DT) (DG)(DG)(DT)(DG)(DT)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can GTGGTGGTGGTGTTGGTGGTGGTGTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'COBALT HEXAMMINE(III)' NCO 4 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 5 'DI(HYDROXYETHYL)ETHER' PEG 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DG n 1 13 DT n 1 14 DT n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DG n 1 22 DG n 1 23 DT n 1 24 DG n 1 25 DT n 1 26 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DT 23 23 23 DT DT A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DT 25 25 25 DT DT A . n A 1 26 DG 26 26 26 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 2 K 1 102 2 K K A . D 2 K 1 103 3 K K A . E 2 K 1 104 4 K K A . F 3 NCO 1 105 1 NCO NCO A . G 3 NCO 1 106 2 NCO NCO A . H 3 NCO 1 107 3 NCO NCO A . I 4 MES 1 108 1 MES MES A . J 5 PEG 1 109 1 PEG PEG A . K 5 PEG 1 110 2 PEG PEG A . L 5 PEG 1 111 3 PEG PEG A . M 5 PEG 1 112 4 PEG PEG A . N 5 PEG 1 113 5 PEG PEG A . O 5 PEG 1 114 6 PEG PEG A . P 6 HOH 1 201 3 HOH HOH A . P 6 HOH 2 202 1 HOH HOH A . P 6 HOH 3 203 2 HOH HOH A . P 6 HOH 4 204 4 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.21.1_5286: ???)' 1 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.8.9.2 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9CIY _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.849 _cell.length_a_esd ? _cell.length_b 71.849 _cell.length_b_esd ? _cell.length_c 41.637 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9CIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9CIY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 63 _exptl_crystal.description 'Large square rods' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M potassium chloride 5 mM Hexammine cobalt chloride 0.05 M MES pH 6.5 25% PEG 4000 ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 285 # _diffrn.ambient_environment ? _diffrn.ambient_temp 196 _diffrn.ambient_temp_details 'Liquid Nitrogen' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-07-09 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.920105 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.920105 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-1 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 64.06 _reflns.entry_id 9CIY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.39 _reflns.d_resolution_low 41.64 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4625 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.76 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 15.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.120 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.39 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 828 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 14.1 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.563 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.266 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9CIY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 32.20 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4588 _refine.ls_number_reflns_R_free 219 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.22 _refine.ls_percent_reflns_R_free 4.77 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1984 _refine.ls_R_factor_R_free 0.2321 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1968 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.71 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.28 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 32.20 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 632 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 549 _refine_hist.pdbx_number_atoms_ligand 79 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 694 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.762 ? 1063 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 35.808 ? 304 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.041 ? 105 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 26 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.40 3.02 . . 106 2125 100.00 . . . . 0.2838 . . . . . . . . . . . 0.3190 'X-RAY DIFFRACTION' 3.02 32.20 . . 113 2244 99.00 . . . . 0.1795 . . . . . . . . . . . 0.2129 # _struct.entry_id 9CIY _struct.title 'Right-left hybrid parallel G-quadruplex from NSD1 promoter' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9CIY _struct_keywords.text 'G-quadruplex, right-left-handed G-quadruplex, parallel, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9CIY _struct_ref.pdbx_db_accession 9CIY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9CIY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 26 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9CIY _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 26 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DT 14 O4 ? ? ? 1_555 H NCO . N1 ? ? A DT 14 A NCO 107 7_554 ? ? ? ? ? ? ? 1.295 ? ? metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 B K . K ? ? A DG 1 A K 101 1_555 ? ? ? ? ? ? ? 2.895 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 C K . K ? ? A DG 1 A K 102 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 101 1_555 ? ? ? ? ? ? ? 2.798 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 3.014 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc6 metalc ? ? A DG 6 O6 ? ? ? 1_555 B K . K ? ? A DG 6 A K 101 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc7 metalc ? ? A DG 7 O6 ? ? ? 1_555 B K . K ? ? A DG 7 A K 101 1_555 ? ? ? ? ? ? ? 2.989 ? ? metalc8 metalc ? ? A DG 7 O6 ? ? ? 1_555 C K . K ? ? A DG 7 A K 102 1_555 ? ? ? ? ? ? ? 2.848 ? ? metalc9 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 101 1_555 ? ? ? ? ? ? ? 2.962 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.966 ? ? metalc11 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.903 ? ? metalc12 metalc ? ? A DG 12 O6 ? ? ? 1_555 B K . K ? ? A DG 12 A K 101 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc13 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 102 1_555 ? ? ? ? ? ? ? 2.928 ? ? metalc14 metalc ? ? A DG 15 O6 ? ? ? 1_555 D K . K ? ? A DG 15 A K 103 1_555 ? ? ? ? ? ? ? 2.801 ? ? metalc15 metalc ? ? A DG 16 O6 ? ? ? 1_555 D K . K ? ? A DG 16 A K 103 1_555 ? ? ? ? ? ? ? 2.826 ? ? metalc16 metalc ? ? A DG 16 O6 ? ? ? 1_555 E K . K ? ? A DG 16 A K 104 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc17 metalc ? ? A DG 16 O6 ? ? ? 1_555 E K . K ? ? A DG 16 A K 104 5_655 ? ? ? ? ? ? ? 2.642 ? ? metalc18 metalc ? ? A DG 18 O6 ? ? ? 1_555 C K . K ? ? A DG 18 A K 102 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc19 metalc ? ? A DG 18 O6 ? ? ? 1_555 D K . K ? ? A DG 18 A K 103 1_555 ? ? ? ? ? ? ? 2.747 ? ? metalc20 metalc ? ? A DG 19 O6 ? ? ? 1_555 D K . K ? ? A DG 19 A K 103 1_555 ? ? ? ? ? ? ? 2.872 ? ? metalc21 metalc ? ? A DG 19 O6 ? ? ? 1_555 E K . K ? ? A DG 19 A K 104 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc22 metalc ? ? A DG 19 O6 ? ? ? 1_555 E K . K ? ? A DG 19 A K 104 5_655 ? ? ? ? ? ? ? 2.704 ? ? metalc23 metalc ? ? A DG 21 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 102 1_555 ? ? ? ? ? ? ? 2.911 ? ? metalc24 metalc ? ? A DG 21 O6 ? ? ? 1_555 D K . K ? ? A DG 21 A K 103 1_555 ? ? ? ? ? ? ? 2.920 ? ? metalc25 metalc ? ? A DG 22 O6 ? ? ? 1_555 D K . K ? ? A DG 22 A K 103 1_555 ? ? ? ? ? ? ? 2.951 ? ? metalc26 metalc ? ? A DG 22 O6 ? ? ? 1_555 E K . K ? ? A DG 22 A K 104 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc27 metalc ? ? A DG 22 O6 ? ? ? 1_555 E K . K ? ? A DG 22 A K 104 5_655 ? ? ? ? ? ? ? 2.709 ? ? metalc28 metalc ? ? A DG 24 O6 ? ? ? 1_555 C K . K ? ? A DG 24 A K 102 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc29 metalc ? ? A DG 24 O6 ? ? ? 1_555 D K . K ? ? A DG 24 A K 103 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc30 metalc ? ? A DG 26 O6 ? ? ? 1_555 D K . K ? ? A DG 26 A K 103 1_555 ? ? ? ? ? ? ? 2.648 ? ? metalc31 metalc ? ? A DG 26 O6 ? ? ? 1_555 E K . K ? ? A DG 26 A K 104 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc32 metalc ? ? A DG 26 O6 ? ? ? 1_555 E K . K ? ? A DG 26 A K 104 5_655 ? ? ? ? ? ? ? 2.708 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 4 O6 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 4 N7 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DG 1 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 10 N1 ? ? A DG 1 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 3 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 3 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 4 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 4 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 6 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 6 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 7 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 7 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 9 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 9 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 15 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 15 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 15 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 16 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 16 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 16 N7 ? ? ? 1_555 A DG 26 N2 ? ? A DG 16 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DG 26 N1 ? ? A DG 16 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 19 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 21 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 21 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 21 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 21 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 22 N1 ? ? ? 1_555 A DG 26 O6 ? ? A DG 22 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 22 N2 ? ? ? 1_555 A DG 26 N7 ? ? A DG 22 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 95.3 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 64.6 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 82.7 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 158.4 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 75.4 ? 6 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 94.6 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 98.0 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 133.9 ? 9 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 64.1 ? 10 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 76.3 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 132.9 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 112.8 ? 13 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 151.6 ? 14 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 68.4 ? 15 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 89.1 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.0 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 156.4 ? 18 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 98.7 ? 19 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 127.6 ? 20 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.1 ? 21 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 76.6 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 82.3 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 71.7 ? 24 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 135.9 ? 25 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 112.1 ? 26 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 153.9 ? 27 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 72.5 ? 28 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 92.1 ? 29 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 71.1 ? 30 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 105.9 ? 31 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 69.8 ? 32 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 68.1 ? 33 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 107.7 ? 34 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 67.7 ? 35 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 87.9 ? 36 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 150.7 ? 37 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 137.6 ? 38 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 81.6 ? 39 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 149.3 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 138.1 ? 41 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 83.0 ? 42 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 89.6 ? 43 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 67.6 ? 44 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 143.2 ? 45 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 83.6 ? 46 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 89.0 ? 47 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 147.3 ? 48 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 103.7 ? 49 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 64.2 ? 50 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 84.2 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 92.4 ? 52 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 154.5 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 137.1 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 64.6 ? 55 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 100.3 ? 56 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 70.3 ? 57 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 85.2 ? 58 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 70.9 ? 59 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 97.4 ? 60 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 140.2 ? 61 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 67.4 ? 62 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 84.1 ? 63 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 106.7 ? 64 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 153.0 ? 65 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 65.4 ? 66 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 89.3 ? 67 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 149.0 ? 68 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 100.9 ? 69 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 136.8 ? 70 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 67.9 ? 71 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 81.5 ? 72 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 66.9 ? 73 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 135.8 ? 74 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 104.3 ? 75 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 151.8 ? 76 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 70.8 ? 77 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 89.0 ? 78 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 91.1 ? 79 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 68.0 ? 80 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 158.2 ? 81 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 103.7 ? 82 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 134.0 ? 83 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 64.1 ? 84 O6 ? A DG 24 ? A DG 24 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 78.5 ? 85 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 0.0 ? 86 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 72.5 ? 87 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 72.5 ? 88 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 72.5 ? 89 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 72.5 ? 90 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 0.0 ? 91 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 112.7 ? 92 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 112.7 ? 93 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 73.8 ? 94 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 73.8 ? 95 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 112.7 ? 96 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 112.7 ? 97 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 73.8 ? 98 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 73.8 ? 99 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 0.0 ? 100 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 69.9 ? 101 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 69.9 ? 102 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 106.7 ? 103 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 106.7 ? 104 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 66.8 ? 105 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 66.8 ? 106 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 69.9 ? 107 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 69.9 ? 108 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 106.7 ? 109 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 106.7 ? 110 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 66.8 ? 111 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 66.8 ? 112 O6 ? A DG 26 ? A DG 26 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 0.0 ? # _pdbx_entry_details.entry_id 9CIY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 104 ? E K . 2 1 A NCO 105 ? F NCO . 3 1 A NCO 105 ? F NCO . 4 1 A NCO 105 ? F NCO . 5 1 A NCO 105 ? F NCO . 6 1 A NCO 105 ? F NCO . 7 1 A NCO 105 ? F NCO . 8 1 A NCO 105 ? F NCO . 9 1 A HOH 203 ? P HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z+1/2 3 y,-x,z+1/2 4 x,-y,-z 5 -x,y,-z 6 -x,-y,z 7 y,x,-z+1/2 8 -y,-x,-z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 27.1953 16.9787 5.0094 0.7449 ? -0.0338 ? 0.2042 ? 0.6159 ? -0.0125 ? 0.5838 ? 9.7773 ? 1.1573 ? 4.2945 ? 8.2597 ? 3.5339 ? 8.9851 ? -0.5529 ? -0.3253 ? -0.5178 ? 0.0139 ? 0.2617 ? 0.3390 ? 0.6207 ? -1.3525 ? 0.3844 ? 2 'X-RAY DIFFRACTION' ? refined 37.7185 15.1211 8.1968 1.0928 ? 0.1480 ? 0.1281 ? 0.4449 ? 0.0255 ? 0.5244 ? 2.1366 ? -1.6829 ? 0.7738 ? 1.2477 ? -0.5237 ? 0.3429 ? -0.5134 ? -0.5500 ? -0.3324 ? 1.1304 ? 0.6114 ? -1.3072 ? 1.8319 ? 0.2998 ? -0.0855 ? 3 'X-RAY DIFFRACTION' ? refined 28.4979 12.9442 -3.2635 1.0557 ? -0.1581 ? 0.1443 ? 0.6367 ? -0.0168 ? 0.8053 ? 8.2661 ? -5.3714 ? 5.0806 ? 7.8811 ? -4.3123 ? 6.6671 ? 0.0507 ? -0.2910 ? -0.5364 ? -0.3811 ? 0.4932 ? 1.4213 ? 1.3259 ? -1.1089 ? -0.6786 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 15 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 16 through 20 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 21 through 26 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 MES O1 O N N 78 MES C2 C N N 79 MES C3 C N N 80 MES N4 N N N 81 MES C5 C N N 82 MES C6 C N N 83 MES C7 C N N 84 MES C8 C N N 85 MES S S N N 86 MES O1S O N N 87 MES O2S O N N 88 MES O3S O N N 89 MES H21 H N N 90 MES H22 H N N 91 MES H31 H N N 92 MES H32 H N N 93 MES HN4 H N N 94 MES H51 H N N 95 MES H52 H N N 96 MES H61 H N N 97 MES H62 H N N 98 MES H71 H N N 99 MES H72 H N N 100 MES H81 H N N 101 MES H82 H N N 102 NCO CO CO N N 103 NCO N1 N N N 104 NCO N2 N N N 105 NCO N3 N N N 106 NCO N4 N N N 107 NCO N5 N N N 108 NCO N6 N N N 109 NCO HN11 H N N 110 NCO HN12 H N N 111 NCO HN13 H N N 112 NCO HN21 H N N 113 NCO HN22 H N N 114 NCO HN23 H N N 115 NCO HN31 H N N 116 NCO HN32 H N N 117 NCO HN33 H N N 118 NCO HN41 H N N 119 NCO HN42 H N N 120 NCO HN43 H N N 121 NCO HN51 H N N 122 NCO HN52 H N N 123 NCO HN53 H N N 124 NCO HN61 H N N 125 NCO HN62 H N N 126 NCO HN63 H N N 127 PEG C1 C N N 128 PEG O1 O N N 129 PEG C2 C N N 130 PEG O2 O N N 131 PEG C3 C N N 132 PEG C4 C N N 133 PEG O4 O N N 134 PEG H11 H N N 135 PEG H12 H N N 136 PEG HO1 H N N 137 PEG H21 H N N 138 PEG H22 H N N 139 PEG H31 H N N 140 PEG H32 H N N 141 PEG H41 H N N 142 PEG H42 H N N 143 PEG HO4 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 MES O1 C2 sing N N 79 MES O1 C6 sing N N 80 MES C2 C3 sing N N 81 MES C2 H21 sing N N 82 MES C2 H22 sing N N 83 MES C3 N4 sing N N 84 MES C3 H31 sing N N 85 MES C3 H32 sing N N 86 MES N4 C5 sing N N 87 MES N4 C7 sing N N 88 MES N4 HN4 sing N N 89 MES C5 C6 sing N N 90 MES C5 H51 sing N N 91 MES C5 H52 sing N N 92 MES C6 H61 sing N N 93 MES C6 H62 sing N N 94 MES C7 C8 sing N N 95 MES C7 H71 sing N N 96 MES C7 H72 sing N N 97 MES C8 S sing N N 98 MES C8 H81 sing N N 99 MES C8 H82 sing N N 100 MES S O1S doub N N 101 MES S O2S doub N N 102 MES S O3S sing N N 103 NCO CO N1 sing N N 104 NCO CO N2 sing N N 105 NCO CO N3 sing N N 106 NCO CO N4 sing N N 107 NCO CO N5 sing N N 108 NCO CO N6 sing N N 109 NCO N1 HN11 sing N N 110 NCO N1 HN12 sing N N 111 NCO N1 HN13 sing N N 112 NCO N2 HN21 sing N N 113 NCO N2 HN22 sing N N 114 NCO N2 HN23 sing N N 115 NCO N3 HN31 sing N N 116 NCO N3 HN32 sing N N 117 NCO N3 HN33 sing N N 118 NCO N4 HN41 sing N N 119 NCO N4 HN42 sing N N 120 NCO N4 HN43 sing N N 121 NCO N5 HN51 sing N N 122 NCO N5 HN52 sing N N 123 NCO N5 HN53 sing N N 124 NCO N6 HN61 sing N N 125 NCO N6 HN62 sing N N 126 NCO N6 HN63 sing N N 127 PEG C1 O1 sing N N 128 PEG C1 C2 sing N N 129 PEG C1 H11 sing N N 130 PEG C1 H12 sing N N 131 PEG O1 HO1 sing N N 132 PEG C2 O2 sing N N 133 PEG C2 H21 sing N N 134 PEG C2 H22 sing N N 135 PEG O2 C3 sing N N 136 PEG C3 C4 sing N N 137 PEG C3 H31 sing N N 138 PEG C3 H32 sing N N 139 PEG C4 O4 sing N N 140 PEG C4 H41 sing N N 141 PEG C4 H42 sing N N 142 PEG O4 HO4 sing N N 143 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9CIY 'z-form double helix' 9CIY 'bulge loop' 9CIY 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 12 1_555 1.747 -3.164 -0.039 -8.473 -5.762 -89.222 1 A_DG3:DG12_A A 3 ? A 12 ? 6 3 1 A DG 4 1_555 A DG 1 1_555 1.565 -3.394 0.027 -4.563 0.477 -89.928 2 A_DG4:DG1_A A 4 ? A 1 ? 6 3 1 A DG 6 1_555 A DG 9 1_555 -1.779 3.273 -0.083 8.530 6.064 89.653 3 A_DG6:DG9_A A 6 ? A 9 ? 6 3 1 A DG 7 1_555 A DG 10 1_555 -1.588 3.485 -0.061 5.879 3.353 89.957 4 A_DG7:DG10_A A 7 ? A 10 ? 6 3 1 A DG 16 1_555 A DG 19 1_555 -1.581 3.322 0.012 6.476 1.961 91.133 5 A_DG16:DG19_A A 16 ? A 19 ? 6 3 1 A DG 26 1_555 A DG 22 1_555 1.337 -3.441 0.353 -7.342 2.383 -89.710 6 A_DG26:DG22_A A 26 ? A 22 ? 6 3 1 A DG 18 1_555 A DG 21 1_555 -1.468 3.352 0.059 -0.633 -0.504 93.566 7 A_DG18:DG21_A A 18 ? A 21 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 12 1_555 A DG 4 1_555 A DG 1 1_555 0.656 -0.839 3.526 -3.048 2.711 -25.410 1.044 0.529 3.646 -6.113 -6.872 -25.730 1 AA_DG3DG4:DG1DG12_AA A 3 ? A 12 ? A 4 ? A 1 ? 1 A DG 6 1_555 A DG 9 1_555 A DG 7 1_555 A DG 10 1_555 0.593 -0.748 3.467 -4.522 1.872 -24.156 1.130 -0.113 3.563 -4.414 -10.665 -24.639 2 AA_DG6DG7:DG10DG9_AA A 6 ? A 9 ? A 7 ? A 10 ? 1 A DG 16 1_555 A DG 19 1_555 A DG 26 1_555 A DG 22 1_555 1.562 -3.313 0.271 -2.845 -3.720 -179.378 1.656 0.781 0.271 1.860 -1.423 -179.379 3 AA_DG16DG26:DG22DG19_AA A 16 ? A 19 ? A 26 ? A 22 ? 1 A DG 26 1_555 A DG 22 1_555 A DG 18 1_555 A DG 21 1_555 -1.419 3.111 3.319 -1.525 0.632 125.234 1.746 0.786 3.338 0.356 0.859 125.241 4 AA_DG26DG18:DG21DG22_AA A 26 ? A 22 ? A 18 ? A 21 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R15CA253134 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9C46 _pdbx_initial_refinement_model.details 'left-right hybrid G-quadruplex' # _space_group.name_H-M_alt 'P 42 2 2' _space_group.name_Hall 'P 4c 2' _space_group.IT_number 93 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 9CIY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.013918 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013918 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024017 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CO ? ? 21.85313 5.04979 ? ? 2.45200 36.11361 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #