HEADER TRANSFERASE 08-JUL-24 9CKF TITLE CRYSTAL STRUCTURE OF SMYD2 SECONDARY BINDING SITE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSKM-B,HISTONE METHYLTRANSFERASE SMYD2,LYSINE N- COMPND 5 METHYLTRANSFERASE 3C,SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.1.1.-,2.1.1.354; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD2, KMT3C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCDF-SUMO KEYWDS SMYD2, MUTANT, PARP1, METHYLTRANSFERASE, SET AND MYND-CONTAINING KEYWDS 2 PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,N.SPELLMON,E.PERRY,J.BRUNZELLE,Z.YANG REVDAT 1 15-JAN-25 9CKF 0 JRNL AUTH Y.ZHANG,E.ALSHAMMARI,J.SOBOTA,N.SPELLMON,E.PERRY,T.CAO, JRNL AUTH 2 T.MUGUNAMALWATHTHA,S.SMITH,J.BRUNZELLE,G.WU,T.STEMMLER, JRNL AUTH 3 J.JIN,C.LI,Z.YANG JRNL TITL STRUCTURE OF THE SMYD2-PARP1 COMPLEX REVEALS BOTH PRODUCTIVE JRNL TITL 2 AND ALLOSTERIC MODES OF PEPTIDE BINDING. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 39677743 JRNL DOI 10.1101/2024.12.03.626679 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.6 REMARK 3 NUMBER OF REFLECTIONS : 27956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.9400 - 5.2000 0.89 4184 203 0.1861 0.2143 REMARK 3 2 5.2000 - 4.1300 0.89 4031 192 0.1828 0.2073 REMARK 3 3 4.1300 - 3.6100 0.84 3783 181 0.2080 0.2293 REMARK 3 4 3.6100 - 3.2800 0.72 3247 117 0.2625 0.2870 REMARK 3 5 3.2800 - 3.0400 0.64 2846 157 0.2856 0.3310 REMARK 3 6 3.0400 - 2.8600 0.58 2595 133 0.2993 0.3407 REMARK 3 7 2.8600 - 2.7200 0.51 2287 114 0.3029 0.3369 REMARK 3 8 2.7200 - 2.6000 0.45 2023 98 0.3005 0.3514 REMARK 3 9 2.6000 - 2.5000 0.38 1680 85 0.2970 0.3300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.379 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7108 REMARK 3 ANGLE : 0.671 9579 REMARK 3 CHIRALITY : 0.040 1019 REMARK 3 PLANARITY : 0.004 1236 REMARK 3 DIHEDRAL : 13.655 2710 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -19.0252 -16.8131 -14.1485 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.2888 REMARK 3 T33: 0.2412 T12: -0.0293 REMARK 3 T13: -0.0858 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.3278 L22: 0.9760 REMARK 3 L33: 0.8302 L12: -0.2714 REMARK 3 L13: -0.4487 L23: 0.3275 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.0244 S13: 0.0778 REMARK 3 S21: -0.2047 S22: -0.0159 S23: 0.1303 REMARK 3 S31: -0.0580 S32: 0.0691 S33: -0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 107.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 100 MM TRIS-HCL 7.5, 5% REMARK 280 ETHANOL, 1 MM PARP1 PEPTIDE, 0.6 MM ADOHCY, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 107.59400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.45450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 107.59400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.45450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 101 68.67 -153.18 REMARK 500 HIS A 119 68.01 -163.79 REMARK 500 PRO A 167 -168.75 -77.39 REMARK 500 ASP A 188 -159.82 -90.83 REMARK 500 VAL A 277 52.85 -94.70 REMARK 500 TYR A 311 11.74 -150.36 REMARK 500 MET A 353 1.22 -69.63 REMARK 500 ASN B 101 68.18 -153.95 REMARK 500 HIS B 119 66.57 -163.50 REMARK 500 PRO B 167 -169.74 -78.24 REMARK 500 ASP B 188 -158.58 -91.08 REMARK 500 CYS B 264 -169.22 -75.75 REMARK 500 VAL B 277 52.04 -95.52 REMARK 500 TYR B 311 10.91 -151.29 REMARK 500 MET B 353 0.90 -69.31 REMARK 500 SER B 432 30.63 -73.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 656 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 657 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 114.1 REMARK 620 3 CYS A 74 SG 99.8 114.5 REMARK 620 4 CYS A 78 SG 103.9 97.5 127.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 111.1 REMARK 620 3 HIS A 86 NE2 99.7 103.9 REMARK 620 4 CYS A 90 SG 124.1 112.5 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 262 SG 100.1 REMARK 620 3 CYS A 264 SG 113.9 103.8 REMARK 620 4 CYS A 267 SG 94.6 112.8 128.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 52 SG REMARK 620 2 CYS B 55 SG 96.9 REMARK 620 3 CYS B 74 SG 101.3 115.5 REMARK 620 4 CYS B 78 SG 94.4 93.1 145.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 CYS B 68 SG 109.8 REMARK 620 3 HIS B 86 NE2 107.2 103.8 REMARK 620 4 CYS B 90 SG 119.9 108.7 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 209 SG REMARK 620 2 CYS B 262 SG 117.2 REMARK 620 3 CYS B 264 SG 105.2 93.0 REMARK 620 4 CYS B 267 SG 106.7 113.5 121.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6N3G RELATED DB: PDB DBREF 9CKF A 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433 DBREF 9CKF B 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433 SEQADV 9CKF ALA A 351 UNP Q9NRG4 LEU 351 ENGINEERED MUTATION SEQADV 9CKF ALA A 356 UNP Q9NRG4 TRP 356 ENGINEERED MUTATION SEQADV 9CKF ALA B 351 UNP Q9NRG4 LEU 351 ENGINEERED MUTATION SEQADV 9CKF ALA B 356 UNP Q9NRG4 TRP 356 ENGINEERED MUTATION SEQRES 1 A 433 MET ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS SEQRES 2 A 433 SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO SEQRES 3 A 433 PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR SEQRES 4 A 433 ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS SEQRES 5 A 433 GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS SEQRES 6 A 433 GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS SEQRES 7 A 433 GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER SEQRES 8 A 433 PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU SEQRES 9 A 433 THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS SEQRES 10 A 433 ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA SEQRES 11 A 433 VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN SEQRES 12 A 433 GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU SEQRES 13 A 433 HIS HIS PHE TYR SER LYS HIS LEU GLY PHE PRO ASP ASN SEQRES 14 A 433 ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN SEQRES 15 A 433 GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY SEQRES 16 A 433 SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER SEQRES 17 A 433 CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU SEQRES 18 A 433 ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU SEQRES 19 A 433 GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR SEQRES 20 A 433 GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE SEQRES 21 A 433 THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP SEQRES 22 A 433 LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO SEQRES 23 A 433 LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG SEQRES 24 A 433 ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS SEQRES 25 A 433 SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN SEQRES 26 A 433 GLU LYS MET SER SER VAL PHE GLU ASP SER ASN VAL TYR SEQRES 27 A 433 MET LEU HIS MET MET TYR GLN ALA MET GLY VAL CYS ALA SEQRES 28 A 433 TYR MET GLN ASP ALA GLU GLY ALA LEU GLN TYR GLY GLN SEQRES 29 A 433 LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR SEQRES 30 A 433 SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG SEQRES 31 A 433 LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS SEQRES 32 A 433 ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS SEQRES 33 A 433 GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU SEQRES 34 A 433 ILE GLU SER HIS SEQRES 1 B 433 MET ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS SEQRES 2 B 433 SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO SEQRES 3 B 433 PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR SEQRES 4 B 433 ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS SEQRES 5 B 433 GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS SEQRES 6 B 433 GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS SEQRES 7 B 433 GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER SEQRES 8 B 433 PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU SEQRES 9 B 433 THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS SEQRES 10 B 433 ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA SEQRES 11 B 433 VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN SEQRES 12 B 433 GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU SEQRES 13 B 433 HIS HIS PHE TYR SER LYS HIS LEU GLY PHE PRO ASP ASN SEQRES 14 B 433 ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN SEQRES 15 B 433 GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY SEQRES 16 B 433 SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER SEQRES 17 B 433 CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU SEQRES 18 B 433 ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU SEQRES 19 B 433 GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR SEQRES 20 B 433 GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE SEQRES 21 B 433 THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP SEQRES 22 B 433 LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO SEQRES 23 B 433 LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG SEQRES 24 B 433 ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS SEQRES 25 B 433 SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN SEQRES 26 B 433 GLU LYS MET SER SER VAL PHE GLU ASP SER ASN VAL TYR SEQRES 27 B 433 MET LEU HIS MET MET TYR GLN ALA MET GLY VAL CYS ALA SEQRES 28 B 433 TYR MET GLN ASP ALA GLU GLY ALA LEU GLN TYR GLY GLN SEQRES 29 B 433 LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR SEQRES 30 B 433 SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG SEQRES 31 B 433 LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS SEQRES 32 B 433 ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS SEQRES 33 B 433 GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU SEQRES 34 B 433 ILE GLU SER HIS HET GOL A 501 6 HET SAH A 502 26 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET GOL B 501 6 HET GOL B 502 6 HET SAH B 503 26 HET ZN B 504 1 HET ZN B 505 1 HET ZN B 506 1 HETNAM GOL GLYCEROL HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 5 ZN 6(ZN 2+) FORMUL 14 HOH *125(H2 O) HELIX 1 AA1 VAL A 45 ARG A 48 5 4 HELIX 2 AA2 ASN A 75 LYS A 87 1 13 HELIX 3 AA3 GLU A 89 GLY A 97 1 9 HELIX 4 AA4 GLU A 98 TRP A 100 5 3 HELIX 5 AA5 SER A 103 HIS A 119 1 17 HELIX 6 AA6 ALA A 130 PHE A 134 5 5 HELIX 7 AA7 HIS A 137 LEU A 141 5 5 HELIX 8 AA8 ASP A 142 TYR A 160 1 19 HELIX 9 AA9 ASP A 168 GLY A 183 1 16 HELIX 10 AB1 ASP A 201 MET A 205 5 5 HELIX 11 AB2 PRO A 246 PHE A 259 1 14 HELIX 12 AB3 CYS A 264 LYS A 270 1 7 HELIX 13 AB4 LYS A 272 VAL A 277 1 6 HELIX 14 AB5 LYS A 287 LYS A 309 1 23 HELIX 15 AB6 SER A 313 SER A 330 1 18 HELIX 16 AB7 ASN A 336 MET A 353 1 18 HELIX 17 AB8 ASP A 355 LYS A 372 1 18 HELIX 18 AB9 SER A 378 LEU A 395 1 18 HELIX 19 AC1 HIS A 397 HIS A 416 1 20 HELIX 20 AC2 HIS A 420 SER A 432 1 13 HELIX 21 AC3 VAL B 45 ARG B 48 5 4 HELIX 22 AC4 ASN B 75 GLY B 97 1 23 HELIX 23 AC5 GLU B 98 TRP B 100 5 3 HELIX 24 AC6 SER B 103 ILE B 118 1 16 HELIX 25 AC7 ALA B 130 PHE B 134 5 5 HELIX 26 AC8 HIS B 137 LEU B 141 5 5 HELIX 27 AC9 ASP B 142 TYR B 160 1 19 HELIX 28 AD1 ASP B 168 ASN B 182 1 15 HELIX 29 AD2 ASP B 201 MET B 205 5 5 HELIX 30 AD3 PRO B 246 TYR B 258 1 13 HELIX 31 AD4 CYS B 264 LYS B 270 1 7 HELIX 32 AD5 LYS B 272 VAL B 277 1 6 HELIX 33 AD6 LYS B 287 LYS B 309 1 23 HELIX 34 AD7 SER B 313 SER B 329 1 17 HELIX 35 AD8 ASN B 336 MET B 353 1 18 HELIX 36 AD9 ASP B 355 LYS B 372 1 18 HELIX 37 AE1 SER B 378 LEU B 395 1 18 HELIX 38 AE2 HIS B 397 HIS B 416 1 20 HELIX 39 AE3 HIS B 420 SER B 432 1 13 SHEET 1 AA1 2 LEU A 9 CYS A 13 0 SHEET 2 AA1 2 ARG A 19 ALA A 23 -1 O ARG A 22 N GLU A 10 SHEET 1 AA2 3 LEU A 32 PRO A 37 0 SHEET 2 AA2 3 LEU A 221 ALA A 226 -1 O VAL A 224 N LEU A 33 SHEET 3 AA2 3 VAL A 213 LYS A 218 -1 N LYS A 218 O LEU A 221 SHEET 1 AA3 3 ALA A 40 LEU A 43 0 SHEET 2 AA3 3 HIS A 193 ILE A 198 -1 O SER A 196 N VAL A 42 SHEET 3 AA3 3 PHE A 184 GLU A 187 -1 N ILE A 186 O LEU A 194 SHEET 1 AA4 2 SER A 63 LYS A 64 0 SHEET 2 AA4 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 AA5 2 ASN A 206 HIS A 207 0 SHEET 2 AA5 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206 SHEET 1 AA6 2 LEU B 9 CYS B 13 0 SHEET 2 AA6 2 ARG B 19 ALA B 23 -1 O ARG B 22 N GLU B 10 SHEET 1 AA7 3 LEU B 32 PRO B 37 0 SHEET 2 AA7 3 LEU B 221 ALA B 226 -1 O VAL B 224 N LEU B 33 SHEET 3 AA7 3 VAL B 213 LYS B 218 -1 N THR B 216 O GLU B 223 SHEET 1 AA8 3 ALA B 40 LEU B 43 0 SHEET 2 AA8 3 HIS B 193 ILE B 198 -1 O SER B 196 N VAL B 42 SHEET 3 AA8 3 GLY B 183 GLU B 187 -1 N ILE B 186 O LEU B 194 SHEET 1 AA9 2 SER B 63 LYS B 64 0 SHEET 2 AA9 2 PHE B 72 TYR B 73 -1 O TYR B 73 N SER B 63 SHEET 1 AB1 2 ASN B 206 HIS B 207 0 SHEET 2 AB1 2 PHE B 237 THR B 238 1 O THR B 238 N ASN B 206 LINK SG CYS A 52 ZN ZN A 505 1555 1555 2.32 LINK SG CYS A 55 ZN ZN A 505 1555 1555 2.27 LINK SG CYS A 65 ZN ZN A 503 1555 1555 2.34 LINK SG CYS A 68 ZN ZN A 503 1555 1555 2.25 LINK SG CYS A 74 ZN ZN A 505 1555 1555 2.64 LINK SG CYS A 78 ZN ZN A 505 1555 1555 2.76 LINK NE2 HIS A 86 ZN ZN A 503 1555 1555 2.29 LINK SG CYS A 90 ZN ZN A 503 1555 1555 2.33 LINK SG CYS A 209 ZN ZN A 504 1555 1555 2.49 LINK SG CYS A 262 ZN ZN A 504 1555 1555 2.24 LINK SG CYS A 264 ZN ZN A 504 1555 1555 2.32 LINK SG CYS A 267 ZN ZN A 504 1555 1555 2.37 LINK SG CYS B 52 ZN ZN B 506 1555 1555 2.58 LINK SG CYS B 55 ZN ZN B 506 1555 1555 2.30 LINK SG CYS B 65 ZN ZN B 504 1555 1555 2.46 LINK SG CYS B 68 ZN ZN B 504 1555 1555 2.34 LINK SG CYS B 74 ZN ZN B 506 1555 1555 2.47 LINK SG CYS B 78 ZN ZN B 506 1555 1555 2.59 LINK NE2 HIS B 86 ZN ZN B 504 1555 1555 2.16 LINK SG CYS B 90 ZN ZN B 504 1555 1555 2.45 LINK SG CYS B 209 ZN ZN B 505 1555 1555 2.42 LINK SG CYS B 262 ZN ZN B 505 1555 1555 2.32 LINK SG CYS B 264 ZN ZN B 505 1555 1555 2.47 LINK SG CYS B 267 ZN ZN B 505 1555 1555 2.44 CRYST1 215.188 52.909 151.903 90.00 134.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004647 0.000000 0.004606 0.00000 SCALE2 0.000000 0.018900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009269 0.00000