HEADER ISOMERASE 13-JUL-24 9CM8 TITLE UDP-GLCNAC 2-EPIMERASE MNAA OF PAENIBACILLUS ALVEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE (NON-HYDROLYZING); COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.3.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS ALVEI; SOURCE 3 ORGANISM_TAXID: 44250; SOURCE 4 STRAIN: CCM 2051T; SOURCE 5 GENE: GQA12_18035; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EPIMERASE, UDP-GLCNAC, UDP-MANNAC, SUGAR BINDING PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.G.LEGG,N.MATEYKO,S.V.EVANS REVDAT 2 23-OCT-24 9CM8 1 JRNL REVDAT 1 02-OCT-24 9CM8 0 JRNL AUTH C.STEFANOVIC,M.S.G.LEGG,N.MATEYKO,J.J.ENDER,T.KUVEK, JRNL AUTH 2 C.OOSTENBRINK,C.SCHAFFER,S.V.EVANS,F.F.HAGER-MAIR JRNL TITL INSIGHTS INTO STRUCTURE AND ACTIVITY OF A UDP-GLCNAC JRNL TITL 2 2-EPIMERASE INVOLVED IN SECONDARY CELL WALL POLYMER JRNL TITL 3 BIOSYNTHESIS IN PAENIBACILLUS ALVEI. JRNL REF FRONT MOL BIOSCI V. 11 70989 2024 JRNL REFN ESSN 2296-889X JRNL PMID 39391870 JRNL DOI 10.3389/FMOLB.2024.1470989 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 37651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2575 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : 3.83000 REMARK 3 B33 (A**2) : -1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.118 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5801 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5338 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7919 ; 1.662 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12319 ; 1.301 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 739 ; 7.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;34.669 ;22.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 890 ;19.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.034 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 791 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6513 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1166 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2962 ; 2.850 ; 3.456 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2961 ; 2.846 ; 3.455 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3693 ; 4.335 ; 5.170 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3694 ; 4.335 ; 5.170 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2839 ; 3.141 ; 3.707 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2840 ; 3.140 ; 3.707 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4225 ; 4.962 ; 5.450 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6197 ; 7.065 ;40.835 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6186 ; 7.060 ;40.819 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9CM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39705 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M CACL2, 0.1 M TRIS/HCL PH 8.8, REMARK 280 AND 15% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.88150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -32.42678 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -40.88150 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -106.88666 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 42 REMARK 465 HIS A 43 REMARK 465 ARG A 44 REMARK 465 GLN A 45 REMARK 465 GLN A 66 REMARK 465 ALA A 67 REMARK 465 ARG A 68 REMARK 465 GLN A 69 REMARK 465 THR A 380 REMARK 465 LYS A 381 REMARK 465 PHE A 382 REMARK 465 THR A 383 REMARK 465 ASN A 384 REMARK 465 LEU A 385 REMARK 465 GLU A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 MET B 1 REMARK 465 HIS B 43 REMARK 465 ARG B 44 REMARK 465 GLN B 45 REMARK 465 MET B 46 REMARK 465 GLN B 66 REMARK 465 ALA B 67 REMARK 465 ARG B 68 REMARK 465 THR B 380 REMARK 465 LYS B 381 REMARK 465 PHE B 382 REMARK 465 THR B 383 REMARK 465 ASN B 384 REMARK 465 LEU B 385 REMARK 465 GLU B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 MET A 46 CG SD CE REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 LEU A 51 CG CD1 CD2 REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 MET A 65 CG SD CE REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 188 CG OD1 OD2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 GLN A 198 CG CD OE1 NE2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 HIS A 379 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 2 OG REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 ARG B 13 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 42 CG CD OE1 NE2 REMARK 470 ASP B 48 CG OD1 OD2 REMARK 470 GLN B 49 CG CD OE1 NE2 REMARK 470 VAL B 53 CG1 CG2 REMARK 470 ASN B 55 CG OD1 ND2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 GLN B 69 CG CD OE1 NE2 REMARK 470 GLN B 87 CG CD OE1 NE2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 SER B 187 OG REMARK 470 ASP B 188 CG OD1 OD2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 ARG B 210 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 256 CG OD1 OD2 REMARK 470 VAL B 268 CG1 CG2 REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 LYS B 326 CG CD CE NZ REMARK 470 GLU B 338 CG CD OE1 OE2 REMARK 470 ARG B 343 CG CD NE CZ NH1 NH2 REMARK 470 SER B 345 OG REMARK 470 LYS B 346 CG CD CE NZ REMARK 470 LYS B 355 CG CD CE NZ REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 470 HIS B 379 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 230 OH TYR A 328 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 283 CB - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 ASP A 353 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 THR B 283 CB - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 40 -62.73 -100.63 REMARK 500 ASP A 99 34.20 -147.66 REMARK 500 GLU A 121 50.96 71.44 REMARK 500 TRP A 127 29.31 49.95 REMARK 500 ASN A 164 31.42 72.29 REMARK 500 ASP A 188 -17.16 -45.29 REMARK 500 SER A 336 -61.58 -107.96 REMARK 500 ASP A 337 93.19 -63.79 REMARK 500 ASN A 349 107.38 -56.88 REMARK 500 PHE A 378 100.92 117.89 REMARK 500 ASP B 61 113.14 -169.49 REMARK 500 ARG B 308 106.58 124.04 REMARK 500 SER B 336 -65.20 -95.33 REMARK 500 GLU B 338 177.61 -48.93 REMARK 500 THR B 339 -40.64 77.01 REMARK 500 ASN B 349 108.84 -50.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 337 GLU B 338 148.35 REMARK 500 REMARK 500 REMARK: NULL DBREF1 9CM8 A 1 384 UNP A0A8I2FAI9_PAEAL DBREF2 9CM8 A A0A8I2FAI9 1 384 DBREF1 9CM8 B 1 384 UNP A0A8I2FAI9_PAEAL DBREF2 9CM8 B A0A8I2FAI9 1 384 SEQADV 9CM8 LEU A 385 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 GLU A 386 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS A 387 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS A 388 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS A 389 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS A 390 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS A 391 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS A 392 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 LEU B 385 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 GLU B 386 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS B 387 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS B 388 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS B 389 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS B 390 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS B 391 UNP A0A8I2FAI EXPRESSION TAG SEQADV 9CM8 HIS B 392 UNP A0A8I2FAI EXPRESSION TAG SEQRES 1 A 392 MET SER LYS VAL LYS VAL MET THR VAL PHE GLY VAL ARG SEQRES 2 A 392 PRO GLU ALA ILE LYS MET ALA PRO LEU ILE LEU GLU LEU SEQRES 3 A 392 GLN LYS HIS PRO GLU HIS ILE GLU SER ILE VAL CYS VAL SEQRES 4 A 392 THR ALA GLN HIS ARG GLN MET LEU ASP GLN VAL LEU ASP SEQRES 5 A 392 VAL PHE ASN ILE LYS PRO ASP TYR ASP LEU ASP ILE MET SEQRES 6 A 392 GLN ALA ARG GLN THR LEU ASN ASP ILE SER VAL ARG VAL SEQRES 7 A 392 LEU GLN GLY LEU GLU PRO VAL LEU GLN GLU ALA LYS PRO SEQRES 8 A 392 ASP ILE VAL LEU VAL HIS GLY ASP THR LEU THR THR PHE SEQRES 9 A 392 LEU ALA SER TYR ALA ALA PHE MET GLN GLN ILE LYS VAL SEQRES 10 A 392 GLY HIS VAL GLU ALA GLY LEU ARG THR TRP ASN LYS LEU SEQRES 11 A 392 SER PRO PHE PRO GLU GLU MET ASN ARG GLN LEU THR GLY SEQRES 12 A 392 VAL LEU ALA ASP LEU HIS PHE ALA PRO THR ASP TRP SER SEQRES 13 A 392 ALA SER ASN LEU ARG LYS GLU ASN LYS GLN ASP ALA SER SEQRES 14 A 392 ILE PHE VAL THR GLY ASN THR VAL THR ASP VAL PHE GLN SEQRES 15 A 392 TYR THR VAL ARG SER ASP TYR LYS HIS GLU VAL LEU ASP SEQRES 16 A 392 TRP ALA GLN GLY LYS ARG LEU VAL LEU MET THR ALA HIS SEQRES 17 A 392 ARG ARG GLU SER GLN GLY GLU PRO HIS ARG ASN ILE PHE SEQRES 18 A 392 ARG ALA VAL ARG ARG ILE ALA ASP GLU PHE GLU ASP ILE SEQRES 19 A 392 ALA ILE VAL TYR PRO VAL HIS PRO SER PRO ALA VAL ARG SEQRES 20 A 392 GLU PRO ALA HIS GLU MET LEU GLY ASP HIS PRO ARG ILE SEQRES 21 A 392 LYS LEU ILE ASP PRO LEU ASP VAL VAL ASP LEU HIS ASN SEQRES 22 A 392 PHE TYR PRO HIS THR HIS LEU ILE LEU THR ASP SER GLY SEQRES 23 A 392 GLY LEU GLN GLU GLU ALA PRO SER PHE GLY ILE PRO VAL SEQRES 24 A 392 LEU VAL LEU ARG GLU THR THR GLU ARG PRO GLU GLY ILE SEQRES 25 A 392 ASP ALA GLY THR LEU GLU LEU VAL GLY THR ASP GLU GLU SEQRES 26 A 392 LYS VAL TYR ALA ARG ALA LYS ALA LEU LEU SER ASP GLU SEQRES 27 A 392 THR THR TYR ALA ARG MET SER LYS ALA ALA ASN PRO TYR SEQRES 28 A 392 GLY ASP GLY LYS ALA SER GLN ARG ILE VAL SER ALA ILE SEQRES 29 A 392 LEU HIS SER PHE GLY VAL LEU GLU GLU ARG PRO GLU PRO SEQRES 30 A 392 PHE HIS THR LYS PHE THR ASN LEU GLU HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS SEQRES 1 B 392 MET SER LYS VAL LYS VAL MET THR VAL PHE GLY VAL ARG SEQRES 2 B 392 PRO GLU ALA ILE LYS MET ALA PRO LEU ILE LEU GLU LEU SEQRES 3 B 392 GLN LYS HIS PRO GLU HIS ILE GLU SER ILE VAL CYS VAL SEQRES 4 B 392 THR ALA GLN HIS ARG GLN MET LEU ASP GLN VAL LEU ASP SEQRES 5 B 392 VAL PHE ASN ILE LYS PRO ASP TYR ASP LEU ASP ILE MET SEQRES 6 B 392 GLN ALA ARG GLN THR LEU ASN ASP ILE SER VAL ARG VAL SEQRES 7 B 392 LEU GLN GLY LEU GLU PRO VAL LEU GLN GLU ALA LYS PRO SEQRES 8 B 392 ASP ILE VAL LEU VAL HIS GLY ASP THR LEU THR THR PHE SEQRES 9 B 392 LEU ALA SER TYR ALA ALA PHE MET GLN GLN ILE LYS VAL SEQRES 10 B 392 GLY HIS VAL GLU ALA GLY LEU ARG THR TRP ASN LYS LEU SEQRES 11 B 392 SER PRO PHE PRO GLU GLU MET ASN ARG GLN LEU THR GLY SEQRES 12 B 392 VAL LEU ALA ASP LEU HIS PHE ALA PRO THR ASP TRP SER SEQRES 13 B 392 ALA SER ASN LEU ARG LYS GLU ASN LYS GLN ASP ALA SER SEQRES 14 B 392 ILE PHE VAL THR GLY ASN THR VAL THR ASP VAL PHE GLN SEQRES 15 B 392 TYR THR VAL ARG SER ASP TYR LYS HIS GLU VAL LEU ASP SEQRES 16 B 392 TRP ALA GLN GLY LYS ARG LEU VAL LEU MET THR ALA HIS SEQRES 17 B 392 ARG ARG GLU SER GLN GLY GLU PRO HIS ARG ASN ILE PHE SEQRES 18 B 392 ARG ALA VAL ARG ARG ILE ALA ASP GLU PHE GLU ASP ILE SEQRES 19 B 392 ALA ILE VAL TYR PRO VAL HIS PRO SER PRO ALA VAL ARG SEQRES 20 B 392 GLU PRO ALA HIS GLU MET LEU GLY ASP HIS PRO ARG ILE SEQRES 21 B 392 LYS LEU ILE ASP PRO LEU ASP VAL VAL ASP LEU HIS ASN SEQRES 22 B 392 PHE TYR PRO HIS THR HIS LEU ILE LEU THR ASP SER GLY SEQRES 23 B 392 GLY LEU GLN GLU GLU ALA PRO SER PHE GLY ILE PRO VAL SEQRES 24 B 392 LEU VAL LEU ARG GLU THR THR GLU ARG PRO GLU GLY ILE SEQRES 25 B 392 ASP ALA GLY THR LEU GLU LEU VAL GLY THR ASP GLU GLU SEQRES 26 B 392 LYS VAL TYR ALA ARG ALA LYS ALA LEU LEU SER ASP GLU SEQRES 27 B 392 THR THR TYR ALA ARG MET SER LYS ALA ALA ASN PRO TYR SEQRES 28 B 392 GLY ASP GLY LYS ALA SER GLN ARG ILE VAL SER ALA ILE SEQRES 29 B 392 LEU HIS SER PHE GLY VAL LEU GLU GLU ARG PRO GLU PRO SEQRES 30 B 392 PHE HIS THR LYS PHE THR ASN LEU GLU HIS HIS HIS HIS SEQRES 31 B 392 HIS HIS HET PEG A 401 7 HET PEG B 401 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 HOH *183(H2 O) HELIX 1 AA1 VAL A 12 GLN A 27 1 16 HELIX 2 AA2 LEU A 47 ASN A 55 1 9 HELIX 3 AA3 LEU A 71 LYS A 90 1 20 HELIX 4 AA4 THR A 100 MET A 112 1 13 HELIX 5 AA5 PRO A 134 ALA A 146 1 13 HELIX 6 AA6 THR A 153 GLU A 163 1 11 HELIX 7 AA7 GLN A 166 ALA A 168 5 3 HELIX 8 AA8 ASN A 175 ASP A 179 5 5 HELIX 9 AA9 VAL A 180 VAL A 185 1 6 HELIX 10 AB1 HIS A 191 GLN A 198 1 8 HELIX 11 AB2 ARG A 209 GLN A 213 5 5 HELIX 12 AB3 GLY A 214 PHE A 231 1 18 HELIX 13 AB4 SER A 243 GLY A 255 1 13 HELIX 14 AB5 ASP A 267 TYR A 275 1 9 HELIX 15 AB6 SER A 285 ALA A 292 1 8 HELIX 16 AB7 PRO A 293 GLY A 296 5 4 HELIX 17 AB8 PRO A 309 ALA A 314 1 6 HELIX 18 AB9 ASP A 323 ASP A 337 1 15 HELIX 19 AC1 ASP A 337 ALA A 347 1 11 HELIX 20 AC2 LYS A 355 PHE A 368 1 14 HELIX 21 AC3 VAL B 12 GLN B 27 1 16 HELIX 22 AC4 GLN B 49 PHE B 54 1 6 HELIX 23 AC5 THR B 70 LYS B 90 1 21 HELIX 24 AC6 THR B 100 GLN B 113 1 14 HELIX 25 AC7 PRO B 134 ALA B 146 1 13 HELIX 26 AC8 THR B 153 GLU B 163 1 11 HELIX 27 AC9 GLN B 166 ALA B 168 5 3 HELIX 28 AD1 ASN B 175 ASP B 179 5 5 HELIX 29 AD2 VAL B 180 VAL B 185 1 6 HELIX 30 AD3 HIS B 191 ALA B 197 1 7 HELIX 31 AD4 ARG B 209 GLN B 213 5 5 HELIX 32 AD5 GLY B 214 PHE B 231 1 18 HELIX 33 AD6 SER B 243 GLY B 255 1 13 HELIX 34 AD7 ASP B 267 TYR B 275 1 9 HELIX 35 AD8 SER B 285 ALA B 292 1 8 HELIX 36 AD9 PRO B 293 GLY B 296 5 4 HELIX 37 AE1 PRO B 309 ALA B 314 1 6 HELIX 38 AE2 ASP B 323 ASP B 337 1 15 HELIX 39 AE3 THR B 339 ALA B 347 1 9 HELIX 40 AE4 LYS B 355 PHE B 368 1 14 SHEET 1 AA1 7 TYR A 60 ASP A 61 0 SHEET 2 AA1 7 ILE A 33 VAL A 39 1 N VAL A 39 O TYR A 60 SHEET 3 AA1 7 VAL A 4 PHE A 10 1 N THR A 8 O CYS A 38 SHEET 4 AA1 7 ILE A 93 HIS A 97 1 O LEU A 95 N MET A 7 SHEET 5 AA1 7 LYS A 116 VAL A 120 1 O VAL A 120 N VAL A 96 SHEET 6 AA1 7 LEU A 148 ALA A 151 1 O PHE A 150 N HIS A 119 SHEET 7 AA1 7 ILE A 170 VAL A 172 1 O PHE A 171 N HIS A 149 SHEET 1 AA2 6 ILE A 260 ILE A 263 0 SHEET 2 AA2 6 ILE A 234 PRO A 239 1 N ILE A 236 O LYS A 261 SHEET 3 AA2 6 ARG A 201 THR A 206 1 N MET A 205 O VAL A 237 SHEET 4 AA2 6 THR A 278 THR A 283 1 O HIS A 279 N LEU A 202 SHEET 5 AA2 6 VAL A 299 VAL A 301 1 O LEU A 300 N ILE A 281 SHEET 6 AA2 6 LEU A 317 LEU A 319 1 O GLU A 318 N VAL A 301 SHEET 1 AA3 7 TYR B 60 ASP B 61 0 SHEET 2 AA3 7 ILE B 33 VAL B 39 1 O VAL B 37 N TYR B 60 SHEET 3 AA3 7 VAL B 4 PHE B 10 1 N THR B 8 O CYS B 38 SHEET 4 AA3 7 ILE B 93 HIS B 97 1 O LEU B 95 N MET B 7 SHEET 5 AA3 7 LYS B 116 VAL B 120 1 O VAL B 120 N VAL B 96 SHEET 6 AA3 7 LEU B 148 ALA B 151 1 O PHE B 150 N HIS B 119 SHEET 7 AA3 7 ILE B 170 VAL B 172 1 O PHE B 171 N HIS B 149 SHEET 1 AA4 6 ILE B 260 ILE B 263 0 SHEET 2 AA4 6 ILE B 234 PRO B 239 1 N ILE B 236 O LYS B 261 SHEET 3 AA4 6 ARG B 201 MET B 205 1 N MET B 205 O VAL B 237 SHEET 4 AA4 6 THR B 278 THR B 283 1 O HIS B 279 N LEU B 202 SHEET 5 AA4 6 VAL B 299 VAL B 301 1 O LEU B 300 N ILE B 281 SHEET 6 AA4 6 LEU B 317 LEU B 319 1 O GLU B 318 N VAL B 301 CISPEP 1 SER A 131 PRO A 132 0 -4.47 CISPEP 2 PHE A 133 PRO A 134 0 -1.68 CISPEP 3 SER B 131 PRO B 132 0 -5.19 CISPEP 4 PHE B 133 PRO B 134 0 -6.01 CRYST1 45.816 81.763 107.722 90.00 97.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021826 0.000000 0.002734 0.00000 SCALE2 0.000000 0.012230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009356 0.00000