HEADER DNA BINDING PROTEIN/DNA 13-JUL-24 9CMB TITLE HUMAN PU.1 ETS DOMAIN (165-270) BOUND TO D(AATAAAAGGAAGTGGG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR PU.1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: ETS-DOMAIN UNP RESIDUES 165-270; COMPND 5 SYNONYM: 31 KDA-TRANSFORMING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*AP*TP*AP*AP*AP*AP*GP*GP*AP*AP*GP*TP*GP*GP*G)- COMPND 9 3'); COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*TP*TP*TP*TP*AP*T)- COMPND 14 3'); COMPND 15 CHAIN: E, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS ETS FAMILY TRANSCRIPTION FACTOR, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.M.K.POON REVDAT 1 18-JUN-25 9CMB 0 JRNL AUTH G.M.K.POON JRNL TITL HUMAN PU.1 ETS DOMAIN (165-270) BOUND TO D(AATAAAAGGAAGTGGG) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.750 REMARK 3 FREE R VALUE TEST SET COUNT : 3658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9100 - 6.3500 0.97 1760 152 0.2235 0.2136 REMARK 3 2 6.3500 - 5.0500 0.97 1766 145 0.2203 0.2282 REMARK 3 3 5.0500 - 4.4100 0.96 1752 151 0.1908 0.1951 REMARK 3 4 4.4100 - 4.0100 0.95 1679 141 0.1582 0.1732 REMARK 3 5 4.0100 - 3.7200 0.94 1719 140 0.1921 0.2221 REMARK 3 6 3.7200 - 3.5000 0.95 1691 142 0.2074 0.2477 REMARK 3 7 3.5000 - 3.3300 0.93 1696 145 0.2130 0.2168 REMARK 3 8 3.3300 - 3.1800 0.93 1706 143 0.2315 0.2115 REMARK 3 9 3.1800 - 3.0600 0.93 1670 143 0.2702 0.3541 REMARK 3 10 3.0600 - 2.9600 0.94 1695 143 0.2853 0.3063 REMARK 3 11 2.9600 - 2.8600 0.92 1647 141 0.2672 0.2591 REMARK 3 12 2.8600 - 2.7800 0.93 1712 143 0.2670 0.2997 REMARK 3 13 2.7800 - 2.7100 0.93 1666 136 0.2867 0.3025 REMARK 3 14 2.7100 - 2.6400 0.92 1644 134 0.2684 0.3059 REMARK 3 15 2.6400 - 2.5800 0.93 1699 138 0.2715 0.2850 REMARK 3 16 2.5800 - 2.5300 0.92 1690 142 0.2484 0.2906 REMARK 3 17 2.5300 - 2.4800 0.92 1657 142 0.2757 0.2785 REMARK 3 18 2.4800 - 2.4300 0.91 1659 130 0.2927 0.2958 REMARK 3 19 2.4300 - 2.3900 0.91 1652 143 0.2828 0.3089 REMARK 3 20 2.3900 - 2.3500 0.91 1641 135 0.2899 0.3159 REMARK 3 21 2.3500 - 2.3100 0.91 1648 142 0.3103 0.2888 REMARK 3 22 2.3100 - 2.2700 0.91 1647 140 0.2859 0.3612 REMARK 3 23 2.2700 - 2.2400 0.90 1622 141 0.3131 0.3246 REMARK 3 24 2.2400 - 2.2100 0.89 1614 133 0.3402 0.2855 REMARK 3 25 2.2100 - 2.1800 0.91 1653 139 0.3587 0.3541 REMARK 3 26 2.1800 - 2.1500 0.89 1586 134 0.3685 0.3604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.303 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3002 REMARK 3 ANGLE : 1.553 4298 REMARK 3 CHIRALITY : 0.100 460 REMARK 3 PLANARITY : 0.010 316 REMARK 3 DIHEDRAL : 25.974 1298 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920119 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 28.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE, PH 6.5, 200 REMARK 280 MM ZINC ACETATE AND 2% PEG 600, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.47700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.36550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.47700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.36550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 322 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 165 REMARK 465 SER A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 GLY A 260 REMARK 465 GLY A 261 REMARK 465 LEU A 262 REMARK 465 ALA A 263 REMARK 465 GLU A 264 REMARK 465 ARG A 265 REMARK 465 ARG A 266 REMARK 465 HIS A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 HIS A 270 REMARK 465 GLY C 165 REMARK 465 SER C 166 REMARK 465 LYS C 167 REMARK 465 LYS C 168 REMARK 465 GLY C 260 REMARK 465 GLY C 261 REMARK 465 LEU C 262 REMARK 465 ALA C 263 REMARK 465 GLU C 264 REMARK 465 ARG C 265 REMARK 465 ARG C 266 REMARK 465 HIS C 267 REMARK 465 PRO C 268 REMARK 465 PRO C 269 REMARK 465 HIS C 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ARG A 259 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 ARG C 259 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 204 CE REMARK 480 ARG A 220 CZ NH1 REMARK 480 LYS A 237 CG NZ REMARK 480 LYS A 247 CE REMARK 480 LYS C 204 CE REMARK 480 ARG C 220 CZ NH1 REMARK 480 LYS C 237 CG NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER C 253 O HOH C 401 1.60 REMARK 500 O HOH C 402 O HOH C 425 2.13 REMARK 500 O HOH C 408 O HOH C 423 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 184 HE1 HIS C 211 2556 1.57 REMARK 500 O HOH C 424 O HOH C 424 2556 2.08 REMARK 500 NE2 HIS A 205 NE2 HIS A 205 2655 2.10 REMARK 500 OD2 ASP C 184 CE1 HIS C 211 2556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 8 C5 DG B 8 N7 0.041 REMARK 500 DT E 28 C2 DT E 28 O2 -0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 3 O3' - P - OP1 ANGL. DEV. = 7.4 DEGREES REMARK 500 DG B 8 O5' - P - OP2 ANGL. DEV. = -8.0 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA B 11 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA D 2 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 8 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 245 48.79 -84.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 187 OD2 REMARK 620 2 HIS C 205 ND1 88.2 REMARK 620 3 HOH C 402 O 60.9 128.7 REMARK 620 4 HOH C 424 O 110.5 48.1 171.3 REMARK 620 5 HOH C 425 O 99.4 172.0 54.8 129.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8E3K RELATED DB: PDB REMARK 900 IDENTICAL COMPLEX IN DIFFERENT SPACE GROUP DBREF 9CMB A 165 270 UNP P17947 SPI1_HUMAN 165 270 DBREF 9CMB B 1 16 PDB 9CMB 9CMB 1 16 DBREF 9CMB C 165 270 UNP P17947 SPI1_HUMAN 165 270 DBREF 9CMB D 1 16 PDB 9CMB 9CMB 1 16 DBREF 9CMB E 17 32 PDB 9CMB 9CMB 17 32 DBREF 9CMB F 17 32 PDB 9CMB 9CMB 17 32 SEQRES 1 A 106 GLY SER LYS LYS LYS ILE ARG LEU TYR GLN PHE LEU LEU SEQRES 2 A 106 ASP LEU LEU ARG SER GLY ASP MET LYS ASP SER ILE TRP SEQRES 3 A 106 TRP VAL ASP LYS ASP LYS GLY THR PHE GLN PHE SER SER SEQRES 4 A 106 LYS HIS LYS GLU ALA LEU ALA HIS ARG TRP GLY ILE GLN SEQRES 5 A 106 LYS GLY ASN ARG LYS LYS MET THR TYR GLN LYS MET ALA SEQRES 6 A 106 ARG ALA LEU ARG ASN TYR GLY LYS THR GLY GLU VAL LYS SEQRES 7 A 106 LYS VAL LYS LYS LYS LEU THR TYR GLN PHE SER GLY GLU SEQRES 8 A 106 VAL LEU GLY ARG GLY GLY LEU ALA GLU ARG ARG HIS PRO SEQRES 9 A 106 PRO HIS SEQRES 1 B 16 DA DA DT DA DA DA DA DG DG DA DA DG DT SEQRES 2 B 16 DG DG DG SEQRES 1 C 106 GLY SER LYS LYS LYS ILE ARG LEU TYR GLN PHE LEU LEU SEQRES 2 C 106 ASP LEU LEU ARG SER GLY ASP MET LYS ASP SER ILE TRP SEQRES 3 C 106 TRP VAL ASP LYS ASP LYS GLY THR PHE GLN PHE SER SER SEQRES 4 C 106 LYS HIS LYS GLU ALA LEU ALA HIS ARG TRP GLY ILE GLN SEQRES 5 C 106 LYS GLY ASN ARG LYS LYS MET THR TYR GLN LYS MET ALA SEQRES 6 C 106 ARG ALA LEU ARG ASN TYR GLY LYS THR GLY GLU VAL LYS SEQRES 7 C 106 LYS VAL LYS LYS LYS LEU THR TYR GLN PHE SER GLY GLU SEQRES 8 C 106 VAL LEU GLY ARG GLY GLY LEU ALA GLU ARG ARG HIS PRO SEQRES 9 C 106 PRO HIS SEQRES 1 D 16 DA DA DT DA DA DA DA DG DG DA DA DG DT SEQRES 2 D 16 DG DG DG SEQRES 1 E 16 DT DC DC DC DA DC DT DT DC DC DT DT DT SEQRES 2 E 16 DT DA DT SEQRES 1 F 16 DT DC DC DC DA DC DT DT DC DC DT DT DT SEQRES 2 F 16 DT DA DT HET ZN C 301 1 HETNAM ZN ZINC ION FORMUL 7 ZN ZN 2+ FORMUL 8 HOH *94(H2 O) HELIX 1 AA1 ARG A 171 GLY A 183 1 13 HELIX 2 AA2 HIS A 205 GLY A 218 1 14 HELIX 3 AA3 THR A 224 GLY A 239 1 16 HELIX 4 AA4 SER A 253 ARG A 259 1 7 HELIX 5 AA5 ARG C 171 GLY C 183 1 13 HELIX 6 AA6 HIS C 205 GLY C 218 1 14 HELIX 7 AA7 THR C 224 GLY C 239 1 16 HELIX 8 AA8 GLU C 255 ARG C 259 5 5 SHEET 1 AA1 4 ILE A 189 ASP A 193 0 SHEET 2 AA1 4 THR A 198 PHE A 201 -1 O THR A 198 N VAL A 192 SHEET 3 AA1 4 THR A 249 PHE A 252 -1 O TYR A 250 N PHE A 199 SHEET 4 AA1 4 VAL A 241 LYS A 243 -1 N LYS A 242 O GLN A 251 SHEET 1 AA2 4 ILE C 189 ASP C 193 0 SHEET 2 AA2 4 THR C 198 PHE C 201 -1 O THR C 198 N VAL C 192 SHEET 3 AA2 4 THR C 249 PHE C 252 -1 O TYR C 250 N PHE C 199 SHEET 4 AA2 4 VAL C 241 LYS C 243 -1 N LYS C 242 O GLN C 251 LINK OD2 ASP C 187 ZN ZN C 301 1555 1555 2.41 LINK ND1 HIS C 205 ZN ZN C 301 1555 2556 2.31 LINK ZN ZN C 301 O HOH C 402 1555 1555 2.34 LINK ZN ZN C 301 O HOH C 424 1555 2556 2.32 LINK ZN ZN C 301 O HOH C 425 1555 1555 2.28 CRYST1 90.954 102.731 55.753 90.00 111.65 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010995 0.000000 0.004364 0.00000 SCALE2 0.000000 0.009734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019298 0.00000 CONECT 2373 5115 CONECT 5115 2373 5150 5173 CONECT 5150 5115 CONECT 5173 5115 MASTER 415 0 1 8 8 0 0 6 2897 6 4 26 END