HEADER RNA BINDING PROTEIN 16-JUL-24 9COJ TITLE SH3-LIKE TANDEM DOMAIN OF HUMAN KIN PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA/RNA-BINDING PROTEIN KIN17; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BINDING TO CURVED DNA,KIN,ANTIGENIC DETERMINANT OF RECA COMPND 5 PROTEIN HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIN, BTCD, KIN17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA BINDING, SH3-LIKE DOMAIN, REPAIR, KOW MOTIF, TANDEM, KIN17, C- KEYWDS 2 TERMINAL DOMAIN, NUCLEAR PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR I.O.DE LOURENCO,M.A.FOSSEY,F.P.SOUZA,F.A.V.SEIXAS,M.A.FERNANDEZ, AUTHOR 2 F.C.L.ALMEIDA,I.P.CARUSO REVDAT 1 31-JUL-24 9COJ 0 JRNL AUTH I.O.DE LOURENCO,M.A.FOSSEY,F.P.SOUZA,F.A.V.SEIXAS, JRNL AUTH 2 M.A.FERNANDEZ,F.C.L.ALMEIDA,I.P.CARUSO JRNL TITL SOLUTION STRUCTURE OF SH3-LIKE TANDEM DOMAIN OF HUMAN KIN JRNL TITL 2 PROTEIN AND ITS INTERACTION WITH RNA HOMO-OLIGONUCLEOTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3.2, CNS, ARIA 2.3.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 5751 RESTRAINTS, 4523 ARE NOE-DERIVED DISTANCE CONSTRAINTS, AND REMARK 3 1228 AMBIGUOUS RESTRAINTS. REMARK 4 REMARK 4 9COJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285808. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.4 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NAPI, 100 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 500 UM [U-13C; U-15N] SH3-LIKE REMARK 210 TANDEM DOMAIN OF HUMAN KIN REMARK 210 PROTEIN, 0.5 MM PMSF, 3 MM EDTA, REMARK 210 0.02 % V/V SODIUM AZIDE, 0.33 MM REMARK 210 98% 2H DSS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HCCH-TOCSY; REMARK 210 2D HBCBCGCDHD; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, CNS, NMRPIPE REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 9 96.09 -69.25 REMARK 500 1 GLU A 18 37.58 75.59 REMARK 500 1 LYS A 26 -3.49 67.16 REMARK 500 1 LYS A 45 -35.56 70.58 REMARK 500 1 PRO A 71 -164.51 -77.03 REMARK 500 2 TRP A 14 11.22 -143.89 REMARK 500 2 LYS A 26 -8.49 69.43 REMARK 500 2 ILE A 43 -62.01 -92.08 REMARK 500 2 ASP A 44 54.94 -147.33 REMARK 500 2 LYS A 45 -35.15 73.67 REMARK 500 2 ASP A 54 -72.19 -69.52 REMARK 500 2 PRO A 71 -157.69 -81.30 REMARK 500 3 GLU A 2 -65.49 -172.66 REMARK 500 3 ARG A 7 96.26 -54.45 REMARK 500 3 LYS A 45 -42.99 70.48 REMARK 500 3 ASN A 95 70.12 -102.95 REMARK 500 4 GLU A 3 56.83 -98.90 REMARK 500 4 LYS A 6 -53.10 -122.34 REMARK 500 4 ARG A 7 87.55 63.02 REMARK 500 4 ALA A 9 81.84 59.66 REMARK 500 4 LYS A 26 -5.13 67.54 REMARK 500 4 ILE A 43 -69.02 -92.43 REMARK 500 4 LYS A 45 -9.97 68.06 REMARK 500 5 ALA A 9 -167.30 68.88 REMARK 500 5 TRP A 14 -0.80 -140.53 REMARK 500 5 GLU A 18 36.36 75.89 REMARK 500 5 LYS A 26 -5.84 68.45 REMARK 500 5 ILE A 43 -65.57 -91.77 REMARK 500 5 LYS A 45 -20.23 75.63 REMARK 500 6 ARG A 7 153.67 68.24 REMARK 500 6 THR A 8 38.36 -93.56 REMARK 500 6 ALA A 9 178.95 67.05 REMARK 500 6 GLU A 18 37.72 76.73 REMARK 500 6 ILE A 43 -63.74 -92.65 REMARK 500 6 LYS A 45 -32.46 71.50 REMARK 500 7 GLU A 3 45.69 -109.88 REMARK 500 7 THR A 8 -74.30 -77.49 REMARK 500 7 ALA A 9 114.92 -163.82 REMARK 500 7 LYS A 26 -4.93 70.57 REMARK 500 7 LYS A 45 -15.53 73.54 REMARK 500 7 PRO A 71 -169.07 -79.44 REMARK 500 7 ASN A 95 63.06 -103.83 REMARK 500 8 GLU A 2 70.30 -101.46 REMARK 500 8 ARG A 7 49.03 -91.37 REMARK 500 8 ALA A 9 102.41 -55.78 REMARK 500 8 TRP A 14 -25.35 -169.47 REMARK 500 8 GLU A 18 40.49 71.94 REMARK 500 8 LYS A 26 -0.52 66.40 REMARK 500 8 ASP A 44 27.26 -147.60 REMARK 500 8 LYS A 45 -26.67 70.13 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50957 RELATED DB: BMRB DBREF 9COJ A 2 127 UNP O60870 KIN17_HUMAN 268 393 SEQADV 9COJ GLY A 1 UNP O60870 EXPRESSION TAG SEQRES 1 A 127 GLY GLU GLU GLU LYS LYS ARG THR ALA ARG THR ASP TYR SEQRES 2 A 127 TRP LEU GLN PRO GLU ILE ILE VAL LYS ILE ILE THR LYS SEQRES 3 A 127 LYS LEU GLY GLU LYS TYR HIS LYS LYS LYS ALA ILE VAL SEQRES 4 A 127 LYS GLU VAL ILE ASP LYS TYR THR ALA VAL VAL LYS MET SEQRES 5 A 127 ILE ASP SER GLY ASP LYS LEU LYS LEU ASP GLN THR HIS SEQRES 6 A 127 LEU GLU THR VAL ILE PRO ALA PRO GLY LYS ARG ILE LEU SEQRES 7 A 127 VAL LEU ASN GLY GLY TYR ARG GLY ASN GLU GLY THR LEU SEQRES 8 A 127 GLU SER ILE ASN GLU LYS THR PHE SER ALA THR ILE VAL SEQRES 9 A 127 ILE GLU THR GLY PRO LEU LYS GLY ARG ARG VAL GLU GLY SEQRES 10 A 127 ILE GLN TYR GLU ASP ILE SER LYS LEU ALA HELIX 1 AA1 GLY A 29 HIS A 33 5 5 HELIX 2 AA2 THR A 107 LYS A 111 5 5 SHEET 1 AA1 5 LYS A 58 ASP A 62 0 SHEET 2 AA1 5 THR A 47 MET A 52 -1 N VAL A 50 O LEU A 59 SHEET 3 AA1 5 LYS A 35 VAL A 42 -1 N GLU A 41 O VAL A 49 SHEET 4 AA1 5 ILE A 19 ILE A 23 -1 N VAL A 21 O ALA A 37 SHEET 5 AA1 5 LEU A 66 THR A 68 -1 O GLU A 67 N LYS A 22 SHEET 1 AA2 9 LYS A 58 ASP A 62 0 SHEET 2 AA2 9 THR A 47 MET A 52 -1 N VAL A 50 O LEU A 59 SHEET 3 AA2 9 LYS A 35 VAL A 42 -1 N GLU A 41 O VAL A 49 SHEET 4 AA2 9 ILE A 19 ILE A 23 -1 N VAL A 21 O ALA A 37 SHEET 5 AA2 9 ILE A 123 LEU A 126 -1 O LYS A 125 N ILE A 20 SHEET 6 AA2 9 ARG A 76 VAL A 79 -1 N LEU A 78 O SER A 124 SHEET 7 AA2 9 GLU A 88 ASN A 95 -1 O GLY A 89 N ILE A 77 SHEET 8 AA2 9 SER A 100 ILE A 105 -1 O THR A 102 N SER A 93 SHEET 9 AA2 9 ARG A 114 GLN A 119 -1 O VAL A 115 N ILE A 103 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1