HEADER OXIDOREDUCTASE 18-JUL-24 9CP7 TITLE CRYSTAL STRUCTURE OF DHPS-3-DEHYDROGENASE, HPSN FROM CUPRIAVIDUS TITLE 2 PINATUBONENSIS IN COMPLEX WITH PRODUCT ANALOGUE (L-CYSTEATE) AND NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOPROPANEDIOL 3-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS PINATUBONENSIS JMP134; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 GENE: HPSN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DHPS-3-DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LEE REVDAT 2 09-OCT-24 9CP7 1 JRNL REVDAT 1 25-SEP-24 9CP7 0 JRNL AUTH L.BURCHILL,A.KAUR,A.NASTASOVICI,M.LEE,S.J.WILLIAMS JRNL TITL STRUCTURAL AND KINETIC INSIGHTS INTO THE STEREOSPECIFIC JRNL TITL 2 OXIDATION OF R -2,3-DIHYDROXYPROPANESULFONATE BY JRNL TITL 3 DHPS-3-DEHYDROGENASE FROM CUPRIAVIDUS PINATUBONENSIS. JRNL REF CHEM SCI V. 15 15757 2024 JRNL REFN ISSN 2041-6520 JRNL PMID 39263660 JRNL DOI 10.1039/D4SC05114A REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 94368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.058 REMARK 3 FREE R VALUE TEST SET COUNT : 4773 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 627 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -0.15900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6918 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6502 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9443 ; 1.534 ; 1.820 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14962 ; 0.541 ; 1.752 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 893 ; 6.064 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ; 7.380 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1088 ;10.876 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1076 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8273 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1561 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1324 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 23 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3407 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 500 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.065 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3506 ; 1.569 ; 2.195 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3506 ; 1.568 ; 2.195 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4385 ; 2.190 ; 3.941 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4386 ; 2.190 ; 3.942 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3412 ; 2.695 ; 2.555 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3410 ; 2.696 ; 2.556 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5046 ; 4.306 ; 4.527 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5047 ; 4.306 ; 4.527 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9CP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000286044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.898 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, BIS-TRIS, LITHIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.16950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET B 379 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 12 -19.80 -48.96 REMARK 500 LEU A 99 -115.27 -101.49 REMARK 500 GLN A 155 -169.20 -108.27 REMARK 500 PHE A 190 -31.77 82.82 REMARK 500 ASN A 203 -178.89 -69.46 REMARK 500 ASP A 220 -70.77 -74.10 REMARK 500 ASP A 233 -169.74 -108.43 REMARK 500 HIS A 323 78.53 -108.87 REMARK 500 THR A 354 -0.24 -158.17 REMARK 500 LEU B 99 -113.98 -104.84 REMARK 500 GLN B 155 -157.34 -111.21 REMARK 500 PHE B 190 -25.23 83.43 REMARK 500 ASN B 203 -176.36 -68.04 REMARK 500 ASP B 220 -71.49 -76.39 REMARK 500 ASP B 233 -167.51 -109.05 REMARK 500 THR B 354 -0.03 -159.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 123 0.09 SIDE CHAIN REMARK 500 ARG A 269 0.10 SIDE CHAIN REMARK 500 ARG B 123 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 922 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 904 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 905 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 248 OE1 REMARK 620 2 HIS A 251 NE2 89.0 REMARK 620 3 ASP A 352 OD2 94.2 176.0 REMARK 620 4 OCS A 502 N 80.8 93.9 84.4 REMARK 620 5 OCS A 502 OD2 172.3 89.6 86.8 91.8 REMARK 620 6 HIS B 411 NE2 96.9 95.6 86.3 170.2 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 411 NE2 REMARK 620 2 GLN B 248 OE1 94.6 REMARK 620 3 HIS B 251 NE2 92.5 90.7 REMARK 620 4 ASP B 352 OD2 85.6 93.4 175.7 REMARK 620 5 OCS B 502 OD2 90.6 174.8 89.4 86.8 REMARK 620 6 OCS B 502 N 173.7 82.4 93.1 89.0 92.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8V35 RELATED DB: PDB REMARK 900 RELATED ID: 8V36 RELATED DB: PDB REMARK 900 RELATED ID: 8V37 RELATED DB: PDB DBREF 9CP7 A 1 436 UNP Q46N53 HPSN_CUPPJ 1 436 DBREF 9CP7 B 1 436 UNP Q46N53 HPSN_CUPPJ 1 436 SEQADV 9CP7 GLY A 0 UNP Q46N53 EXPRESSION TAG SEQADV 9CP7 GLY B 0 UNP Q46N53 EXPRESSION TAG SEQRES 1 A 437 GLY MET ILE SER TYR LEU LYS LYS ALA GLU LYS THR PRO SEQRES 2 A 437 GLN THR GLU THR ALA THR ALA GLN LYS VAL VAL THR GLU SEQRES 3 A 437 MET LEU ALA GLU ILE GLN ALA ARG GLY LYS ASP ALA VAL SEQRES 4 A 437 ARG GLN TYR ALA LYS GLN LEU ASP GLY TRP SER GLY ASP SEQRES 5 A 437 ILE VAL LEU THR PRO ASP GLN ILE ARG GLU GLN THR LYS SEQRES 6 A 437 ASP VAL PRO ALA GLY VAL ARG ALA ASP ILE ASP PHE ALA SEQRES 7 A 437 ILE ARG GLN VAL THR ASP PHE ALA LEU ALA GLN ARG GLU SEQRES 8 A 437 SER LEU LYS GLU PHE SER VAL GLU LEU HIS PRO GLY VAL SEQRES 9 A 437 THR ALA GLY GLN ARG VAL LEU PRO VAL ASN VAL VAL GLY SEQRES 10 A 437 CYS TYR ALA PRO ALA GLY ARG TYR ALA HIS ILE ALA SER SEQRES 11 A 437 ALA TYR MET GLY VAL ALA THR ALA LYS ALA ALA GLY VAL SEQRES 12 A 437 LYS THR VAL VAL ALA CYS SER SER PRO PHE ARG GLY GLN SEQRES 13 A 437 GLY ILE HIS PRO HIS VAL LEU TYR ALA PHE GLN ALA ALA SEQRES 14 A 437 GLY ALA ASP VAL ILE MET ALA LEU GLY GLY VAL GLN ALA SEQRES 15 A 437 ILE ALA SER MET ALA TYR GLY LEU PHE THR GLY LYS PRO SEQRES 16 A 437 ALA ASP VAL VAL VAL GLY PRO GLY ASN LYS PHE VAL ALA SEQRES 17 A 437 GLU ALA LYS ARG SER LEU TYR GLY GLN VAL GLY ILE ASP SEQRES 18 A 437 VAL PHE ALA GLY PRO SER GLU VAL ALA VAL ILE ALA ASP SEQRES 19 A 437 GLU THR ALA ASP PRO ALA ILE VAL ALA SER ASP LEU VAL SEQRES 20 A 437 GLY GLN ALA GLU HIS GLY HIS GLU SER PRO ALA TRP LEU SEQRES 21 A 437 PHE THR THR SER ARG ASP LEU ALA ASP ARG VAL MET ALA SEQRES 22 A 437 LEU VAL PRO GLU LEU ILE ALA LYS LEU PRO PRO THR ALA SEQRES 23 A 437 ARG ASP ALA ALA THR ALA ALA TRP ARG ASP TYR GLY GLU SEQRES 24 A 437 VAL ILE LEU CYS GLY THR ARG GLU GLU VAL VAL GLU ILE SEQRES 25 A 437 SER ASP ARG TYR ALA SER GLU HIS LEU GLU VAL HIS THR SEQRES 26 A 437 ALA ASP LEU ASP TRP TRP LEU ALA ASN LEU THR CYS TYR SEQRES 27 A 437 GLY SER LEU PHE LEU GLY GLU GLU THR THR VAL ALA PHE SEQRES 28 A 437 GLY ASP LYS THR SER GLY PRO ASN HIS VAL LEU PRO THR SEQRES 29 A 437 LYS GLY ALA ALA ARG TYR SER GLY GLY LEU SER VAL HIS SEQRES 30 A 437 LYS PHE MET LYS THR LEU THR TRP GLN GLN MET THR ARG SEQRES 31 A 437 GLU ALA THR ARG GLN ILE GLY GLN VAL THR ALA ARG ILE SEQRES 32 A 437 SER ARG LEU GLU GLY MET GLU ALA HIS ALA ARG THR ALA SEQRES 33 A 437 ASP ASP ARG MET ALA LYS TYR PHE PRO ASN ALA SER PHE SEQRES 34 A 437 GLU MET GLY THR PRO VAL GLU VAL SEQRES 1 B 437 GLY MET ILE SER TYR LEU LYS LYS ALA GLU LYS THR PRO SEQRES 2 B 437 GLN THR GLU THR ALA THR ALA GLN LYS VAL VAL THR GLU SEQRES 3 B 437 MET LEU ALA GLU ILE GLN ALA ARG GLY LYS ASP ALA VAL SEQRES 4 B 437 ARG GLN TYR ALA LYS GLN LEU ASP GLY TRP SER GLY ASP SEQRES 5 B 437 ILE VAL LEU THR PRO ASP GLN ILE ARG GLU GLN THR LYS SEQRES 6 B 437 ASP VAL PRO ALA GLY VAL ARG ALA ASP ILE ASP PHE ALA SEQRES 7 B 437 ILE ARG GLN VAL THR ASP PHE ALA LEU ALA GLN ARG GLU SEQRES 8 B 437 SER LEU LYS GLU PHE SER VAL GLU LEU HIS PRO GLY VAL SEQRES 9 B 437 THR ALA GLY GLN ARG VAL LEU PRO VAL ASN VAL VAL GLY SEQRES 10 B 437 CYS TYR ALA PRO ALA GLY ARG TYR ALA HIS ILE ALA SER SEQRES 11 B 437 ALA TYR MET GLY VAL ALA THR ALA LYS ALA ALA GLY VAL SEQRES 12 B 437 LYS THR VAL VAL ALA CYS SER SER PRO PHE ARG GLY GLN SEQRES 13 B 437 GLY ILE HIS PRO HIS VAL LEU TYR ALA PHE GLN ALA ALA SEQRES 14 B 437 GLY ALA ASP VAL ILE MET ALA LEU GLY GLY VAL GLN ALA SEQRES 15 B 437 ILE ALA SER MET ALA TYR GLY LEU PHE THR GLY LYS PRO SEQRES 16 B 437 ALA ASP VAL VAL VAL GLY PRO GLY ASN LYS PHE VAL ALA SEQRES 17 B 437 GLU ALA LYS ARG SER LEU TYR GLY GLN VAL GLY ILE ASP SEQRES 18 B 437 VAL PHE ALA GLY PRO SER GLU VAL ALA VAL ILE ALA ASP SEQRES 19 B 437 GLU THR ALA ASP PRO ALA ILE VAL ALA SER ASP LEU VAL SEQRES 20 B 437 GLY GLN ALA GLU HIS GLY HIS GLU SER PRO ALA TRP LEU SEQRES 21 B 437 PHE THR THR SER ARG ASP LEU ALA ASP ARG VAL MET ALA SEQRES 22 B 437 LEU VAL PRO GLU LEU ILE ALA LYS LEU PRO PRO THR ALA SEQRES 23 B 437 ARG ASP ALA ALA THR ALA ALA TRP ARG ASP TYR GLY GLU SEQRES 24 B 437 VAL ILE LEU CYS GLY THR ARG GLU GLU VAL VAL GLU ILE SEQRES 25 B 437 SER ASP ARG TYR ALA SER GLU HIS LEU GLU VAL HIS THR SEQRES 26 B 437 ALA ASP LEU ASP TRP TRP LEU ALA ASN LEU THR CYS TYR SEQRES 27 B 437 GLY SER LEU PHE LEU GLY GLU GLU THR THR VAL ALA PHE SEQRES 28 B 437 GLY ASP LYS THR SER GLY PRO ASN HIS VAL LEU PRO THR SEQRES 29 B 437 LYS GLY ALA ALA ARG TYR SER GLY GLY LEU SER VAL HIS SEQRES 30 B 437 LYS PHE MET LYS THR LEU THR TRP GLN GLN MET THR ARG SEQRES 31 B 437 GLU ALA THR ARG GLN ILE GLY GLN VAL THR ALA ARG ILE SEQRES 32 B 437 SER ARG LEU GLU GLY MET GLU ALA HIS ALA ARG THR ALA SEQRES 33 B 437 ASP ASP ARG MET ALA LYS TYR PHE PRO ASN ALA SER PHE SEQRES 34 B 437 GLU MET GLY THR PRO VAL GLU VAL HET ZN A 500 1 HET NAI A 501 44 HET OCS A 502 10 HET ZN B 500 1 HET NAI B 501 44 HET OCS B 502 10 HETNAM ZN ZINC ION HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM OCS CYSTEINESULFONIC ACID HETSYN NAI NADH FORMUL 3 ZN 2(ZN 2+) FORMUL 4 NAI 2(C21 H29 N7 O14 P2) FORMUL 5 OCS 2(C3 H7 N O5 S) FORMUL 9 HOH *627(H2 O) HELIX 1 AA1 GLU A 15 GLY A 34 1 20 HELIX 2 AA2 GLY A 34 GLY A 47 1 14 HELIX 3 AA3 THR A 55 LYS A 64 1 10 HELIX 4 AA4 PRO A 67 SER A 91 1 25 HELIX 5 AA5 HIS A 126 ALA A 140 1 15 HELIX 6 AA6 HIS A 158 GLY A 169 1 12 HELIX 7 AA7 GLY A 177 GLY A 188 1 12 HELIX 8 AA8 ASN A 203 TYR A 214 1 12 HELIX 9 AA9 ASP A 237 GLU A 250 1 14 HELIX 10 AB1 SER A 263 LYS A 280 1 18 HELIX 11 AB2 PRO A 282 GLY A 297 1 16 HELIX 12 AB3 THR A 304 ALA A 316 1 13 HELIX 13 AB4 ASP A 326 LEU A 334 1 9 HELIX 14 AB5 THR A 347 THR A 354 1 8 HELIX 15 AB6 GLY A 365 TYR A 369 5 5 HELIX 16 AB7 SER A 374 LYS A 377 5 4 HELIX 17 AB8 ALA A 391 GLY A 407 1 17 HELIX 18 AB9 MET A 408 PHE A 423 1 16 HELIX 19 AC1 GLU B 15 GLY B 47 1 33 HELIX 20 AC2 THR B 55 LYS B 64 1 10 HELIX 21 AC3 PRO B 67 SER B 91 1 25 HELIX 22 AC4 HIS B 126 ALA B 140 1 15 HELIX 23 AC5 HIS B 158 GLY B 169 1 12 HELIX 24 AC6 GLY B 177 GLY B 188 1 12 HELIX 25 AC7 ASN B 203 TYR B 214 1 12 HELIX 26 AC8 ASP B 237 GLU B 250 1 14 HELIX 27 AC9 SER B 263 LYS B 280 1 18 HELIX 28 AD1 PRO B 282 GLY B 297 1 16 HELIX 29 AD2 THR B 304 ALA B 316 1 13 HELIX 30 AD3 ASP B 326 LEU B 334 1 9 HELIX 31 AD4 THR B 347 THR B 354 1 8 HELIX 32 AD5 GLY B 365 TYR B 369 5 5 HELIX 33 AD6 SER B 374 LYS B 377 5 4 HELIX 34 AD7 ALA B 391 GLY B 407 1 17 HELIX 35 AD8 MET B 408 PHE B 423 1 16 SHEET 1 AA1 9 SER A 3 LYS A 6 0 SHEET 2 AA1 9 GLU A 298 LEU A 301 -1 O LEU A 301 N SER A 3 SHEET 3 AA1 9 ALA A 257 THR A 261 1 N LEU A 259 O ILE A 300 SHEET 4 AA1 9 VAL A 228 ALA A 232 1 N VAL A 230 O PHE A 260 SHEET 5 AA1 9 HIS A 319 HIS A 323 1 O HIS A 323 N ILE A 231 SHEET 6 AA1 9 SER A 339 LEU A 342 1 O PHE A 341 N LEU A 320 SHEET 7 AA1 9 MET B 379 MET B 387 1 O GLN B 385 N LEU A 342 SHEET 8 AA1 9 VAL B 103 PRO B 111 -1 N LEU B 110 O LYS B 380 SHEET 9 AA1 9 PHE B 95 GLU B 98 -1 N VAL B 97 O ALA B 105 SHEET 1 AA2 9 PHE A 95 GLU A 98 0 SHEET 2 AA2 9 VAL A 103 PRO A 111 -1 O ALA A 105 N VAL A 97 SHEET 3 AA2 9 MET A 379 MET A 387 -1 O LYS A 380 N LEU A 110 SHEET 4 AA2 9 SER B 339 LEU B 342 1 O LEU B 342 N GLN A 385 SHEET 5 AA2 9 HIS B 319 HIS B 323 1 N LEU B 320 O PHE B 341 SHEET 6 AA2 9 VAL B 228 ALA B 232 1 N ILE B 231 O HIS B 323 SHEET 7 AA2 9 ALA B 257 THR B 261 1 O TRP B 258 N VAL B 228 SHEET 8 AA2 9 GLU B 298 LEU B 301 1 O ILE B 300 N LEU B 259 SHEET 9 AA2 9 SER B 3 LYS B 6 -1 N SER B 3 O LEU B 301 SHEET 1 AA3 5 VAL A 172 ALA A 175 0 SHEET 2 AA3 5 THR A 144 SER A 149 1 N ALA A 147 O MET A 174 SHEET 3 AA3 5 VAL A 114 ALA A 119 1 N CYS A 117 O VAL A 146 SHEET 4 AA3 5 VAL A 197 VAL A 199 1 O VAL A 199 N GLY A 116 SHEET 5 AA3 5 GLY A 218 ILE A 219 1 O GLY A 218 N VAL A 198 SHEET 1 AA4 5 VAL B 172 ALA B 175 0 SHEET 2 AA4 5 THR B 144 SER B 149 1 N ALA B 147 O VAL B 172 SHEET 3 AA4 5 VAL B 114 ALA B 119 1 N CYS B 117 O VAL B 146 SHEET 4 AA4 5 VAL B 197 VAL B 199 1 O VAL B 199 N GLY B 116 SHEET 5 AA4 5 GLY B 218 ILE B 219 1 O GLY B 218 N VAL B 198 LINK OE1 GLN A 248 ZN ZN A 500 1555 1555 2.17 LINK NE2 HIS A 251 ZN ZN A 500 1555 1555 2.13 LINK OD2 ASP A 352 ZN ZN A 500 1555 1555 2.20 LINK NE2 HIS A 411 ZN ZN B 500 1555 1555 2.08 LINK ZN ZN A 500 N OCS A 502 1555 1555 2.07 LINK ZN ZN A 500 OD2 OCS A 502 1555 1555 2.20 LINK ZN ZN A 500 NE2 HIS B 411 1555 1555 1.99 LINK OE1 GLN B 248 ZN ZN B 500 1555 1555 2.15 LINK NE2 HIS B 251 ZN ZN B 500 1555 1555 2.10 LINK OD2 ASP B 352 ZN ZN B 500 1555 1555 2.28 LINK ZN ZN B 500 OD2 OCS B 502 1555 1555 2.20 LINK ZN ZN B 500 N OCS B 502 1555 1555 2.07 CRYST1 82.931 76.339 85.076 90.00 117.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012058 0.000000 0.006154 0.00000 SCALE2 0.000000 0.013099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013197 0.00000