HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-JUL-24 9CR7 TITLE STRUCTURE OF HUMAN SETD8 IN COMPLEX WITH COVALENT INHIBITOR AM2928 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE KMT5A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H4-K20-HMTASE KMT5A,HISTONE-LYSINE N-METHYLTRANSFERASE COMPND 5 KMT5A,LYSINE N-METHYLTRANSFERASE 5A,LYSINE-SPECIFIC METHYLASE 5A, COMPND 6 PR/SET DOMAIN-CONTAINING PROTEIN 07,PR-SET7,PR/SET07,SET DOMAIN- COMPND 7 CONTAINING PROTEIN 8; COMPND 8 EC: 2.1.1.-,2.1.1.361; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KMT5A, PRSET7, SET07, SET8, SETD8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS2 KEYWDS SETD8, LYSINE METHYLTRANSFERASE, KMT, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.BABAULT,K.S.PARK,J.JIN REVDAT 1 30-JUL-25 9CR7 0 JRNL AUTH A.MA,N.BABAULT,W.HONG,A.DONG,Z.HONG,C.XIN,K.S.PARK, JRNL AUTH 2 P.J.BROWN,J.LIU,M.VEDADI,J.JIN JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIP STUDIES OF SETD8 COVALENT JRNL TITL 2 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5207: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 26147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.3600 - 4.4200 1.00 2652 165 0.1720 0.1975 REMARK 3 2 4.4200 - 3.5100 1.00 2557 128 0.1837 0.1942 REMARK 3 3 3.5000 - 3.0600 1.00 2503 147 0.2305 0.2556 REMARK 3 4 3.0600 - 2.7800 1.00 2476 135 0.2619 0.2682 REMARK 3 5 2.7800 - 2.5800 1.00 2484 126 0.2744 0.2900 REMARK 3 6 2.5800 - 2.4300 1.00 2463 141 0.3075 0.3587 REMARK 3 7 2.4300 - 2.3100 0.99 2442 128 0.2870 0.3494 REMARK 3 8 2.3100 - 2.2100 0.99 2452 120 0.2752 0.3035 REMARK 3 9 2.2100 - 2.1200 1.00 2419 126 0.2752 0.2809 REMARK 3 10 2.1200 - 2.0500 0.95 2358 125 0.2842 0.2912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2351 REMARK 3 ANGLE : 0.609 3156 REMARK 3 CHIRALITY : 0.043 332 REMARK 3 PLANARITY : 0.004 405 REMARK 3 DIHEDRAL : 20.073 912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4856 3.0533 31.2142 REMARK 3 T TENSOR REMARK 3 T11: 0.6804 T22: 0.6759 REMARK 3 T33: 0.5882 T12: 0.0391 REMARK 3 T13: 0.0256 T23: 0.2243 REMARK 3 L TENSOR REMARK 3 L11: 0.3985 L22: 0.2858 REMARK 3 L33: 0.2623 L12: -0.1206 REMARK 3 L13: 0.0336 L23: -0.3742 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.8839 S13: 0.3297 REMARK 3 S21: -0.1464 S22: 0.4112 S23: -0.2207 REMARK 3 S31: 0.1590 S32: -0.7534 S33: 0.0166 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4880 17.8642 17.9682 REMARK 3 T TENSOR REMARK 3 T11: 0.4774 T22: 0.5656 REMARK 3 T33: 0.4981 T12: 0.0888 REMARK 3 T13: 0.0599 T23: 0.0841 REMARK 3 L TENSOR REMARK 3 L11: 4.1915 L22: 1.2132 REMARK 3 L33: 1.2082 L12: -0.8552 REMARK 3 L13: -0.3446 L23: 0.3071 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.2579 S13: 0.2898 REMARK 3 S21: 0.0175 S22: -0.1046 S23: -0.0573 REMARK 3 S31: 0.0988 S32: -0.2851 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4647 -0.1738 0.1005 REMARK 3 T TENSOR REMARK 3 T11: 0.9999 T22: 0.7333 REMARK 3 T33: 0.7543 T12: 0.0187 REMARK 3 T13: -0.0470 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.3694 L22: 0.5620 REMARK 3 L33: 0.6978 L12: -0.1054 REMARK 3 L13: -0.0099 L23: 0.5317 REMARK 3 S TENSOR REMARK 3 S11: 0.4609 S12: 0.8171 S13: -0.7845 REMARK 3 S21: -1.1228 S22: -0.3646 S23: 0.1821 REMARK 3 S31: 0.5591 S32: -0.9150 S33: -0.0055 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0919 4.4312 6.9088 REMARK 3 T TENSOR REMARK 3 T11: 0.5375 T22: 0.4727 REMARK 3 T33: 0.4920 T12: 0.0539 REMARK 3 T13: 0.0322 T23: 0.0779 REMARK 3 L TENSOR REMARK 3 L11: 2.5433 L22: 1.9770 REMARK 3 L33: 2.3342 L12: 1.2439 REMARK 3 L13: -0.2416 L23: 1.6965 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.1503 S13: -0.0707 REMARK 3 S21: -0.4934 S22: -0.0275 S23: 0.0306 REMARK 3 S31: 0.4523 S32: -0.3495 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2798 10.3881 16.8899 REMARK 3 T TENSOR REMARK 3 T11: 0.4470 T22: 0.4823 REMARK 3 T33: 0.5486 T12: 0.1108 REMARK 3 T13: 0.0585 T23: 0.1130 REMARK 3 L TENSOR REMARK 3 L11: 3.0797 L22: 2.4977 REMARK 3 L33: 2.2233 L12: 0.2955 REMARK 3 L13: 1.4302 L23: 2.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.3151 S13: -0.2257 REMARK 3 S21: 0.0325 S22: 0.0300 S23: -0.6981 REMARK 3 S31: 0.2102 S32: 0.1671 S33: 0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9754 10.5078 -33.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.7322 T22: 0.8619 REMARK 3 T33: 0.6509 T12: 0.0118 REMARK 3 T13: 0.0031 T23: 0.0651 REMARK 3 L TENSOR REMARK 3 L11: 0.0948 L22: 0.1841 REMARK 3 L33: 0.2461 L12: 0.0751 REMARK 3 L13: 0.0939 L23: 0.2544 REMARK 3 S TENSOR REMARK 3 S11: -0.5758 S12: 0.5226 S13: 0.0743 REMARK 3 S21: 0.0052 S22: 0.9568 S23: 0.5677 REMARK 3 S31: 0.1225 S32: 1.7547 S33: 0.0110 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 254 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7241 14.9102 -15.1422 REMARK 3 T TENSOR REMARK 3 T11: 0.5524 T22: 0.4914 REMARK 3 T33: 0.3745 T12: -0.0879 REMARK 3 T13: 0.0143 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.9292 L22: 1.7815 REMARK 3 L33: 0.8043 L12: -0.3918 REMARK 3 L13: -0.2463 L23: 0.0660 REMARK 3 S TENSOR REMARK 3 S11: 0.1344 S12: 0.1256 S13: 0.0134 REMARK 3 S21: 0.0285 S22: -0.3133 S23: -0.1823 REMARK 3 S31: 0.2102 S32: 0.4223 S33: -0.0029 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3025 6.2923 -10.8817 REMARK 3 T TENSOR REMARK 3 T11: 0.5522 T22: 0.4599 REMARK 3 T33: 0.4535 T12: -0.0699 REMARK 3 T13: 0.0023 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 3.1354 L22: 2.2203 REMARK 3 L33: 1.0999 L12: -1.5539 REMARK 3 L13: 0.0341 L23: -1.4553 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.0387 S13: -0.3498 REMARK 3 S21: 0.2030 S22: 0.1463 S23: -0.0631 REMARK 3 S31: 0.2747 S32: 0.2786 S33: 0.0022 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 335 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0240 14.5147 -19.8975 REMARK 3 T TENSOR REMARK 3 T11: 0.4509 T22: 0.5065 REMARK 3 T33: 0.5569 T12: -0.0834 REMARK 3 T13: -0.0057 T23: -0.1073 REMARK 3 L TENSOR REMARK 3 L11: 2.0494 L22: 1.7850 REMARK 3 L33: 0.9858 L12: 0.1463 REMARK 3 L13: 0.5346 L23: -1.2533 REMARK 3 S TENSOR REMARK 3 S11: 0.3691 S12: 0.2726 S13: -0.1815 REMARK 3 S21: -0.1025 S22: -0.3252 S23: 0.6054 REMARK 3 S31: 0.2192 S32: -0.1609 S33: 0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 110.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.78100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 AND 0.2 M LITHIUM REMARK 280 NITRATE, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.85750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.35650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.22850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.35650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.85750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.22850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 205 REMARK 465 SER A 206 REMARK 465 TYR A 207 REMARK 465 TYR A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 ASP A 215 REMARK 465 TYR A 216 REMARK 465 ASP A 217 REMARK 465 ILE A 218 REMARK 465 PRO A 219 REMARK 465 THR A 220 REMARK 465 THR A 221 REMARK 465 GLU A 222 REMARK 465 ASN A 223 REMARK 465 LEU A 224 REMARK 465 TYR A 225 REMARK 465 PHE A 226 REMARK 465 GLN A 227 REMARK 465 GLY A 228 REMARK 465 ALA A 229 REMARK 465 MET A 230 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 ARG A 233 REMARK 465 ASP A 379 REMARK 465 ARG A 380 REMARK 465 MET B 205 REMARK 465 SER B 206 REMARK 465 TYR B 207 REMARK 465 TYR B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 ASP B 215 REMARK 465 TYR B 216 REMARK 465 ASP B 217 REMARK 465 ILE B 218 REMARK 465 PRO B 219 REMARK 465 THR B 220 REMARK 465 THR B 221 REMARK 465 GLU B 222 REMARK 465 ASN B 223 REMARK 465 LEU B 224 REMARK 465 TYR B 225 REMARK 465 PHE B 226 REMARK 465 GLN B 227 REMARK 465 GLY B 228 REMARK 465 ALA B 229 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 ARG B 233 REMARK 465 LYS B 234 REMARK 465 SER B 235 REMARK 465 LYS B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 ASP B 379 REMARK 465 ARG B 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 THR A 294 CG2 REMARK 470 ASP A 295 OD1 OD2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 LEU B 239 CG CD1 CD2 REMARK 470 SER B 241 OG REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 LYS B 267 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 311 CAA H81 B 401 1.38 REMARK 500 O THR A 328 N ARG A 329 1.74 REMARK 500 OD2 ASP A 306 OG SER A 308 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 328 C ARG A 329 N -0.519 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 283 -62.36 -105.55 REMARK 500 VAL B 283 -64.14 -107.71 REMARK 500 SER B 343 54.87 -113.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 9CR7 A 232 380 UNP Q9NQR1 KMT5A_HUMAN 232 380 DBREF 9CR7 B 232 380 UNP Q9NQR1 KMT5A_HUMAN 232 380 SEQADV 9CR7 MET A 205 UNP Q9NQR1 INITIATING METHIONINE SEQADV 9CR7 SER A 206 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR A 207 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR A 208 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS A 209 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS A 210 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS A 211 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS A 212 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS A 213 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS A 214 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ASP A 215 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR A 216 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ASP A 217 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ILE A 218 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 PRO A 219 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 THR A 220 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 THR A 221 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLU A 222 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ASN A 223 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 LEU A 224 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR A 225 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 PHE A 226 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLN A 227 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLY A 228 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ALA A 229 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 MET A 230 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLY A 231 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 SER A 343 UNP Q9NQR1 CYS 343 CONFLICT SEQADV 9CR7 MET B 205 UNP Q9NQR1 INITIATING METHIONINE SEQADV 9CR7 SER B 206 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR B 207 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR B 208 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS B 209 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS B 210 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS B 211 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS B 212 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS B 213 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 HIS B 214 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ASP B 215 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR B 216 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ASP B 217 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ILE B 218 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 PRO B 219 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 THR B 220 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 THR B 221 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLU B 222 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ASN B 223 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 LEU B 224 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 TYR B 225 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 PHE B 226 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLN B 227 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLY B 228 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 ALA B 229 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 MET B 230 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 GLY B 231 UNP Q9NQR1 EXPRESSION TAG SEQADV 9CR7 SER B 343 UNP Q9NQR1 CYS 343 CONFLICT SEQRES 1 A 176 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 176 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 176 GLY SER ARG LYS SER LYS ALA GLU LEU GLN SER GLU GLU SEQRES 4 A 176 ARG LYS ARG ILE ASP GLU LEU ILE GLU SER GLY LYS GLU SEQRES 5 A 176 GLU GLY MET LYS ILE ASP LEU ILE ASP GLY LYS GLY ARG SEQRES 6 A 176 GLY VAL ILE ALA THR LYS GLN PHE SER ARG GLY ASP PHE SEQRES 7 A 176 VAL VAL GLU TYR HIS GLY ASP LEU ILE GLU ILE THR ASP SEQRES 8 A 176 ALA LYS LYS ARG GLU ALA LEU TYR ALA GLN ASP PRO SER SEQRES 9 A 176 THR GLY CYS TYR MET TYR TYR PHE GLN TYR LEU SER LYS SEQRES 10 A 176 THR TYR CYS VAL ASP ALA THR ARG GLU THR ASN ARG LEU SEQRES 11 A 176 GLY ARG LEU ILE ASN HIS SER LYS SER GLY ASN CYS GLN SEQRES 12 A 176 THR LYS LEU HIS ASP ILE ASP GLY VAL PRO HIS LEU ILE SEQRES 13 A 176 LEU ILE ALA SER ARG ASP ILE ALA ALA GLY GLU GLU LEU SEQRES 14 A 176 LEU TYR ASP TYR GLY ASP ARG SEQRES 1 B 176 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 176 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 176 GLY SER ARG LYS SER LYS ALA GLU LEU GLN SER GLU GLU SEQRES 4 B 176 ARG LYS ARG ILE ASP GLU LEU ILE GLU SER GLY LYS GLU SEQRES 5 B 176 GLU GLY MET LYS ILE ASP LEU ILE ASP GLY LYS GLY ARG SEQRES 6 B 176 GLY VAL ILE ALA THR LYS GLN PHE SER ARG GLY ASP PHE SEQRES 7 B 176 VAL VAL GLU TYR HIS GLY ASP LEU ILE GLU ILE THR ASP SEQRES 8 B 176 ALA LYS LYS ARG GLU ALA LEU TYR ALA GLN ASP PRO SER SEQRES 9 B 176 THR GLY CYS TYR MET TYR TYR PHE GLN TYR LEU SER LYS SEQRES 10 B 176 THR TYR CYS VAL ASP ALA THR ARG GLU THR ASN ARG LEU SEQRES 11 B 176 GLY ARG LEU ILE ASN HIS SER LYS SER GLY ASN CYS GLN SEQRES 12 B 176 THR LYS LEU HIS ASP ILE ASP GLY VAL PRO HIS LEU ILE SEQRES 13 B 176 LEU ILE ALA SER ARG ASP ILE ALA ALA GLY GLU GLU LEU SEQRES 14 B 176 LEU TYR ASP TYR GLY ASP ARG HET E1J A 401 30 HET H81 B 401 30 HETNAM E1J N-(3-{[7-(2-AMINOETHOXY)-6-METHOXY-2-(PYRROLIDIN-1-YL) HETNAM 2 E1J QUINAZOLIN-4-YL]AMINO}PROPYL)PROP-2-ENAMIDE HETNAM H81 N-(3-{[7-(2-AMINOETHOXY)-6-METHOXY-2-(PYRROLIDIN-1-YL) HETNAM 2 H81 QUINAZOLIN-4-YL]AMINO}PROPYL)PROP-2-YNAMIDE FORMUL 3 E1J C21 H30 N6 O3 FORMUL 4 H81 C21 H28 N6 O3 FORMUL 5 HOH *98(H2 O) HELIX 1 AA1 SER A 235 GLY A 254 1 20 HELIX 2 AA2 GLU A 292 GLN A 305 1 14 HELIX 3 AA3 LEU A 334 ILE A 338 5 5 HELIX 4 AA4 GLN B 240 GLY B 254 1 15 HELIX 5 AA5 ILE B 293 GLN B 305 1 13 HELIX 6 AA6 LEU B 334 ILE B 338 5 5 SHEET 1 AA1 2 MET A 259 ILE A 264 0 SHEET 2 AA1 2 LYS A 267 ALA A 273 -1 O GLY A 270 N ASP A 262 SHEET 1 AA2 5 PHE A 282 GLU A 285 0 SHEET 2 AA2 5 VAL A 356 ALA A 363 -1 O LEU A 361 N VAL A 284 SHEET 3 AA2 5 CYS A 346 ILE A 353 -1 N HIS A 351 O HIS A 358 SHEET 4 AA2 5 LEU A 374 ASP A 376 1 O LEU A 374 N CYS A 346 SHEET 5 AA2 5 ASN A 339 HIS A 340 1 N ASN A 339 O TYR A 375 SHEET 1 AA3 3 ASP A 289 ILE A 291 0 SHEET 2 AA3 3 THR A 322 ASP A 326 -1 O CYS A 324 N ILE A 291 SHEET 3 AA3 3 MET A 313 GLN A 317 -1 N PHE A 316 O TYR A 323 SHEET 1 AA4 2 MET B 259 ILE B 264 0 SHEET 2 AA4 2 LYS B 267 ALA B 273 -1 O GLY B 270 N ASP B 262 SHEET 1 AA5 5 PHE B 282 GLU B 285 0 SHEET 2 AA5 5 VAL B 356 ALA B 363 -1 O LEU B 361 N VAL B 284 SHEET 3 AA5 5 CYS B 346 ILE B 353 -1 N HIS B 351 O HIS B 358 SHEET 4 AA5 5 LEU B 374 ASP B 376 1 O LEU B 374 N CYS B 346 SHEET 5 AA5 5 ASN B 339 HIS B 340 1 N ASN B 339 O TYR B 375 SHEET 1 AA6 3 ASP B 289 GLU B 292 0 SHEET 2 AA6 3 THR B 322 ASP B 326 -1 O ASP B 326 N ASP B 289 SHEET 3 AA6 3 MET B 313 GLN B 317 -1 N PHE B 316 O TYR B 323 LINK SG CYS A 311 CAA E1J A 401 1555 1555 1.56 CRYST1 35.715 102.457 110.713 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009032 0.00000 CONECT 600 2252 CONECT 2244 2245 2249 2258 CONECT 2245 2244 2246 2263 CONECT 2246 2245 2247 2269 CONECT 2247 2246 2251 CONECT 2248 2250 CONECT 2249 2244 2251 CONECT 2250 2248 2260 CONECT 2251 2247 2249 2270 CONECT 2252 600 2253 CONECT 2253 2252 2254 CONECT 2254 2253 2268 2271 CONECT 2255 2256 2268 CONECT 2256 2255 2257 CONECT 2257 2256 2269 CONECT 2258 2244 2259 CONECT 2259 2258 2261 2272 CONECT 2260 2250 2272 CONECT 2261 2259 2263 2273 CONECT 2262 2273 CONECT 2263 2245 2261 CONECT 2264 2265 2270 CONECT 2265 2264 2266 CONECT 2266 2265 2267 CONECT 2267 2266 2270 CONECT 2268 2254 2255 CONECT 2269 2246 2257 CONECT 2270 2251 2264 2267 CONECT 2271 2254 CONECT 2272 2259 2260 CONECT 2273 2261 2262 CONECT 2274 2275 2279 2288 CONECT 2275 2274 2276 2293 CONECT 2276 2275 2277 2299 CONECT 2277 2276 2281 CONECT 2278 2280 CONECT 2279 2274 2281 CONECT 2280 2278 2290 CONECT 2281 2277 2279 2300 CONECT 2282 2283 CONECT 2283 2282 2284 CONECT 2284 2283 2298 2301 CONECT 2285 2286 2298 CONECT 2286 2285 2287 CONECT 2287 2286 2299 CONECT 2288 2274 2289 CONECT 2289 2288 2291 2302 CONECT 2290 2280 2302 CONECT 2291 2289 2293 2303 CONECT 2292 2303 CONECT 2293 2275 2291 CONECT 2294 2295 2300 CONECT 2295 2294 2296 CONECT 2296 2295 2297 CONECT 2297 2296 2300 CONECT 2298 2284 2285 CONECT 2299 2276 2287 CONECT 2300 2281 2294 2297 CONECT 2301 2284 CONECT 2302 2289 2290 CONECT 2303 2291 2292 MASTER 471 0 2 6 20 0 0 6 2399 2 61 28 END