HEADER VIRAL PROTEIN 23-JUL-24 9CRZ TITLE ACANTHAMOEBA POLYPHAGA MIMIVIRUS R655 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYLTRANSFERASE R655; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_TAXID: 212035; SOURCE 4 GENE: MIMI_R655; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEIN, R655 EXPDTA X-RAY DIFFRACTION AUTHOR K.H.MORIN,C.BUHLHELLER,J.S.KIM,S.J.RICHARDS,H.GUO REVDAT 2 25-FEB-26 9CRZ 1 JRNL REVDAT 1 06-AUG-25 9CRZ 0 JRNL AUTH J.S.KIM,B.ZHANG,K.H.MORIN,M.GILLIAM,H.GUO JRNL TITL THE CRYSTAL STRUCTURE OF ACANTHAMOEBA POLYPHAGA MIMIVIRUS JRNL TITL 2 R655 AND ITS POTENTIAL GLYCOSAMINOGLYCAN GLYCOSYLTRANSFERASE JRNL TITL 3 ACTIVITY. JRNL REF BIOCHEMISTRY V. 64 2737 2025 JRNL REFN ISSN 0006-2960 JRNL PMID 40545624 JRNL DOI 10.1021/ACS.BIOCHEM.5C00058 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 46000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.857 REMARK 3 FREE R VALUE TEST SET COUNT : 2234 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3164 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62300 REMARK 3 B22 (A**2) : -2.28900 REMARK 3 B33 (A**2) : 1.66700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.896 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5316 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7206 ; 1.023 ; 1.821 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 624 ; 7.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 5.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 922 ;11.739 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4026 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2428 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3643 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 487 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2505 ; 1.588 ; 2.997 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3126 ; 2.388 ; 5.372 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2811 ; 2.281 ; 3.191 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4080 ; 3.539 ; 5.792 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 324 NULL REMARK 3 1 A 3 A 324 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9CRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000286171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 3.8.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1, PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: R655 IMAC ELUTION FRACTIONS WERE REMARK 280 DIGESTED WITH PRESCISSION, AND THE HIS6 TAG WAS REMOVED BY REMARK 280 SUBTRACTION IMAC. SUBTRACTION IMAC ELUTION FRACTIONS WERE REMARK 280 COMBINED AND CONCENTRATED FOR CRYSTAL TRIALS. SINGLE CRYSTALS REMARK 280 WERE OBTAINED THROUGH HANGING DROP VAPOR DIFFUSION WITH THE REMARK 280 MOSQUITO LIQUID HANDLING ROBOT (TTPLABTECH), UTILIZING A 200-NL REMARK 280 DROP WITH 1:1 MIXTURE OF PROTEIN SOLUTION AND MOTHER LIQUOR AT REMARK 280 277K. THE PROTEIN SOLUTION HAS R655 (30 MG/ML) SUPPLEMENTED WITH REMARK 280 2 MM MANGANESE(II) CHLORIDE AND 2 MM UDP GLUCOSE. THE MOTHER REMARK 280 LIQUOR HAS 0.2 M MAGNESIUM FORMATE, 20% (W/V) PEG 3350. TO REMARK 280 HARVEST THE CRYSTALS, THE CRYSTALS WERE SOAKED IN A 1:1 MIXTURE REMARK 280 OF 50% GLYCEROL AND MOTHER LIQUOR FOR 2 MINUTES AND COOLED IN REMARK 280 LIQUID NITROGEN., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.31700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.72700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.10650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.72700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.31700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.10650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 LEU A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 206 REMARK 465 SER A 207 REMARK 465 VAL A 208 REMARK 465 GLN A 209 REMARK 465 HIS A 210 REMARK 465 ASP A 211 REMARK 465 GLY A 212 REMARK 465 GLU A 213 REMARK 465 HIS A 214 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 LEU B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 LEU B -8 REMARK 465 GLU B -7 REMARK 465 VAL B -6 REMARK 465 LEU B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 128 REMARK 465 ASP B 129 REMARK 465 ASP B 130 REMARK 465 GLN B 206 REMARK 465 SER B 207 REMARK 465 VAL B 208 REMARK 465 GLN B 209 REMARK 465 HIS B 210 REMARK 465 ASP B 211 REMARK 465 GLY B 212 REMARK 465 GLU B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 56 -166.68 -163.23 REMARK 500 ASN A 178 -13.62 -141.17 REMARK 500 VAL A 256 -92.07 -110.97 REMARK 500 HIS B 56 -166.79 -162.86 REMARK 500 ASN B 178 -12.86 -140.24 REMARK 500 VAL B 256 -87.83 -111.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 UDP A 401 O1A 83.8 REMARK 620 3 UDP A 401 O2B 172.3 88.7 REMARK 620 4 HOH A 526 O 88.5 101.2 94.5 REMARK 620 5 HOH A 595 O 86.9 81.5 90.4 174.4 REMARK 620 6 HOH A 664 O 89.2 168.7 97.9 87.4 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 UDP B 401 O1A 88.1 REMARK 620 3 UDP B 401 O3B 176.9 88.9 REMARK 620 4 HOH B 524 O 87.9 92.0 91.9 REMARK 620 5 HOH B 583 O 90.8 90.9 89.5 176.8 REMARK 620 6 HOH B 660 O 86.9 173.7 96.1 91.6 85.4 REMARK 620 N 1 2 3 4 5 DBREF 9CRZ A 2 324 UNP Q5UQ62 YR655_MIMIV 2 324 DBREF 9CRZ B 2 324 UNP Q5UQ62 YR655_MIMIV 2 324 SEQADV 9CRZ MET A -21 UNP Q5UQ62 INITIATING METHIONINE SEQADV 9CRZ GLY A -20 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER A -19 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER A -18 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS A -17 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS A -16 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ LEU A -15 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS A -14 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS A -13 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS A -12 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER A -11 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER A -10 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLY A -9 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ LEU A -8 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLU A -7 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ VAL A -6 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ LEU A -5 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ PHE A -4 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLN A -3 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLY A -2 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ PRO A -1 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLY A 0 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER A 1 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ MET B -21 UNP Q5UQ62 INITIATING METHIONINE SEQADV 9CRZ GLY B -20 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER B -19 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER B -18 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS B -17 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS B -16 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ LEU B -15 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS B -14 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS B -13 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ HIS B -12 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER B -11 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER B -10 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLY B -9 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ LEU B -8 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLU B -7 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ VAL B -6 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ LEU B -5 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ PHE B -4 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLN B -3 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLY B -2 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ PRO B -1 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ GLY B 0 UNP Q5UQ62 EXPRESSION TAG SEQADV 9CRZ SER B 1 UNP Q5UQ62 EXPRESSION TAG SEQRES 1 A 346 MET GLY SER SER HIS HIS LEU HIS HIS HIS SER SER GLY SEQRES 2 A 346 LEU GLU VAL LEU PHE GLN GLY PRO GLY SER GLU ASN LEU SEQRES 3 A 346 LYS ILE ILE VAL ILE ASN LEU LYS ARG ARG THR ASP ARG SEQRES 4 A 346 ARG GLU ILE MET GLU LYS LYS PHE GLN ASP GLU ASN ILE SEQRES 5 A 346 THR GLN TYR GLU PHE PHE GLU ALA PHE ASP GLY GLU THR SEQRES 6 A 346 LEU ARG PRO GLU ASP PRO ILE LEU GLY VAL PHE LYS HIS SEQRES 7 A 346 GLY VAL HIS GLY LEU SER ARG LYS GLY VAL ALA GLY CYS SEQRES 8 A 346 ALA LEU SER HIS TYR THR VAL TRP GLN LYS ILE ALA ALA SEQRES 9 A 346 ASP THR SER GLY THR LYS TYR LEU VAL LEU GLU ASP ASP SEQRES 10 A 346 ILE ASN PHE LYS PRO ASN PHE LYS GLU ASN LEU SER LYS SEQRES 11 A 346 VAL MET LYS THR ILE GLU PRO SER GLN ALA MET ILE LEU SEQRES 12 A 346 ILE GLY MET THR VAL ASN GLY ASP ASP VAL THR LYS THR SEQRES 13 A 346 ARG ASP ILE TYR GLU LEU ASP THR SER TYR THR ILE HIS SEQRES 14 A 346 PRO LEU GLY ARG ASP TYR TYR ALA GLY GLY LEU PHE GLY SEQRES 15 A 346 TYR ILE LEU ASP TYR ARG ALA ALA GLN TYR PHE VAL ASP SEQRES 16 A 346 TYR ILE SER TYR ASN GLY ILE ARG ILE VAL ILE ASP TYR SEQRES 17 A 346 LEU THR TYR ARG SER GLY PHE PRO MET TYR GLU SER HIS SEQRES 18 A 346 PRO HIS LEU VAL TYR THR GLN SER VAL GLN HIS ASP GLY SEQRES 19 A 346 GLU HIS VAL ASP SER ASP ILE GLN HIS GLN TYR ASP ARG SEQRES 20 A 346 ILE LYS TYR ALA ILE ILE PRO ASN THR TYR GLU PHE ASP SEQRES 21 A 346 ASP TYR VAL PHE ILE PRO ASN LYS ASP SER ALA GLY GLY SEQRES 22 A 346 ASP ILE ARG GLU VAL CYS ALA ASP ILE PRO ILE LEU LYS SEQRES 23 A 346 ASN ILE ALA ASP LYS ASP ILE ASN CYS VAL ALA PHE ASN SEQRES 24 A 346 THR TYR GLY TRP VAL LYS ASN ASN ILE LYS PRO LEU HIS SEQRES 25 A 346 GLN LEU ILE ASP ILE GLY ASN ARG TYR TYR GLU SER ASP SEQRES 26 A 346 GLY ILE TYR ILE LYS LYS ASN TYR LEU LEU LYS GLU LYS SEQRES 27 A 346 ILE ILE ILE ASN SER LEU ASN LEU SEQRES 1 B 346 MET GLY SER SER HIS HIS LEU HIS HIS HIS SER SER GLY SEQRES 2 B 346 LEU GLU VAL LEU PHE GLN GLY PRO GLY SER GLU ASN LEU SEQRES 3 B 346 LYS ILE ILE VAL ILE ASN LEU LYS ARG ARG THR ASP ARG SEQRES 4 B 346 ARG GLU ILE MET GLU LYS LYS PHE GLN ASP GLU ASN ILE SEQRES 5 B 346 THR GLN TYR GLU PHE PHE GLU ALA PHE ASP GLY GLU THR SEQRES 6 B 346 LEU ARG PRO GLU ASP PRO ILE LEU GLY VAL PHE LYS HIS SEQRES 7 B 346 GLY VAL HIS GLY LEU SER ARG LYS GLY VAL ALA GLY CYS SEQRES 8 B 346 ALA LEU SER HIS TYR THR VAL TRP GLN LYS ILE ALA ALA SEQRES 9 B 346 ASP THR SER GLY THR LYS TYR LEU VAL LEU GLU ASP ASP SEQRES 10 B 346 ILE ASN PHE LYS PRO ASN PHE LYS GLU ASN LEU SER LYS SEQRES 11 B 346 VAL MET LYS THR ILE GLU PRO SER GLN ALA MET ILE LEU SEQRES 12 B 346 ILE GLY MET THR VAL ASN GLY ASP ASP VAL THR LYS THR SEQRES 13 B 346 ARG ASP ILE TYR GLU LEU ASP THR SER TYR THR ILE HIS SEQRES 14 B 346 PRO LEU GLY ARG ASP TYR TYR ALA GLY GLY LEU PHE GLY SEQRES 15 B 346 TYR ILE LEU ASP TYR ARG ALA ALA GLN TYR PHE VAL ASP SEQRES 16 B 346 TYR ILE SER TYR ASN GLY ILE ARG ILE VAL ILE ASP TYR SEQRES 17 B 346 LEU THR TYR ARG SER GLY PHE PRO MET TYR GLU SER HIS SEQRES 18 B 346 PRO HIS LEU VAL TYR THR GLN SER VAL GLN HIS ASP GLY SEQRES 19 B 346 GLU HIS VAL ASP SER ASP ILE GLN HIS GLN TYR ASP ARG SEQRES 20 B 346 ILE LYS TYR ALA ILE ILE PRO ASN THR TYR GLU PHE ASP SEQRES 21 B 346 ASP TYR VAL PHE ILE PRO ASN LYS ASP SER ALA GLY GLY SEQRES 22 B 346 ASP ILE ARG GLU VAL CYS ALA ASP ILE PRO ILE LEU LYS SEQRES 23 B 346 ASN ILE ALA ASP LYS ASP ILE ASN CYS VAL ALA PHE ASN SEQRES 24 B 346 THR TYR GLY TRP VAL LYS ASN ASN ILE LYS PRO LEU HIS SEQRES 25 B 346 GLN LEU ILE ASP ILE GLY ASN ARG TYR TYR GLU SER ASP SEQRES 26 B 346 GLY ILE TYR ILE LYS LYS ASN TYR LEU LEU LYS GLU LYS SEQRES 27 B 346 ILE ILE ILE ASN SER LEU ASN LEU HET UDP A 401 25 HET MN A 402 1 HET UDP B 401 25 HET MN B 402 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 MN 2(MN 2+) FORMUL 7 HOH *451(H2 O) HELIX 1 AA1 ARG A 14 ASN A 29 1 16 HELIX 2 AA2 ASP A 40 LEU A 44 5 5 HELIX 3 AA3 ASP A 48 LYS A 55 5 8 HELIX 4 AA4 VAL A 58 SER A 62 5 5 HELIX 5 AA5 ARG A 63 ASP A 83 1 21 HELIX 6 AA6 ASN A 101 ILE A 113 1 13 HELIX 7 AA7 ASN A 127 VAL A 131 5 5 HELIX 8 AA8 THR A 134 GLU A 139 1 6 HELIX 9 AA9 ASP A 164 GLY A 179 1 16 HELIX 10 AB1 VAL A 183 SER A 191 1 9 HELIX 11 AB2 ASP A 259 ASP A 270 1 12 HELIX 12 AB3 PRO A 288 LEU A 292 5 5 HELIX 13 AB4 LYS A 309 LEU A 322 1 14 HELIX 14 AB5 ARG B 14 ASN B 29 1 16 HELIX 15 AB6 ASP B 40 LEU B 44 5 5 HELIX 16 AB7 ASP B 48 LYS B 55 5 8 HELIX 17 AB8 VAL B 58 SER B 62 5 5 HELIX 18 AB9 ARG B 63 ASP B 83 1 21 HELIX 19 AC1 ASN B 101 THR B 112 1 12 HELIX 20 AC2 THR B 132 GLU B 139 1 8 HELIX 21 AC3 ASP B 164 TYR B 177 1 14 HELIX 22 AC4 VAL B 183 SER B 191 1 9 HELIX 23 AC5 ASP B 259 ASP B 270 1 12 HELIX 24 AC6 PRO B 288 LEU B 292 5 5 HELIX 25 AC7 LYS B 309 LEU B 322 1 14 SHEET 1 AA1 7 TYR A 33 GLU A 37 0 SHEET 2 AA1 7 LYS A 5 ASN A 10 1 N VAL A 8 O PHE A 36 SHEET 3 AA1 7 TYR A 89 GLU A 93 1 O LEU A 90 N LYS A 5 SHEET 4 AA1 7 GLY A 160 LEU A 163 -1 O TYR A 161 N VAL A 91 SHEET 5 AA1 7 MET A 119 LEU A 121 -1 N ILE A 120 O ILE A 162 SHEET 6 AA1 7 TYR A 196 HIS A 199 1 O TYR A 196 N LEU A 121 SHEET 7 AA1 7 THR A 145 PRO A 148 -1 N HIS A 147 O GLU A 197 SHEET 1 AA2 2 ASN A 97 PHE A 98 0 SHEET 2 AA2 2 VAL A 203 TYR A 204 -1 O TYR A 204 N ASN A 97 SHEET 1 AA3 2 ILE A 231 PRO A 232 0 SHEET 2 AA3 2 TYR A 300 GLU A 301 1 O GLU A 301 N ILE A 231 SHEET 1 AA4 5 TYR A 240 PRO A 244 0 SHEET 2 AA4 5 GLY A 304 LYS A 308 -1 O ILE A 305 N ILE A 243 SHEET 3 AA4 5 ALA A 275 ASN A 277 -1 N PHE A 276 O TYR A 306 SHEET 4 AA4 5 TRP A 281 LYS A 283 -1 O LYS A 283 N ALA A 275 SHEET 5 AA4 5 ASP A 252 GLU A 255 -1 N ILE A 253 O VAL A 282 SHEET 1 AA5 2 LYS A 246 ASP A 247 0 SHEET 2 AA5 2 ILE A 293 ASP A 294 -1 O ILE A 293 N ASP A 247 SHEET 1 AA6 7 GLU B 34 GLU B 37 0 SHEET 2 AA6 7 LYS B 5 ASN B 10 1 N VAL B 8 O PHE B 36 SHEET 3 AA6 7 TYR B 89 GLU B 93 1 O LEU B 90 N LYS B 5 SHEET 4 AA6 7 GLY B 160 LEU B 163 -1 O LEU B 163 N TYR B 89 SHEET 5 AA6 7 MET B 119 LEU B 121 -1 N ILE B 120 O ILE B 162 SHEET 6 AA6 7 TYR B 196 HIS B 199 1 O TYR B 196 N LEU B 121 SHEET 7 AA6 7 THR B 145 PRO B 148 -1 N HIS B 147 O GLU B 197 SHEET 1 AA7 2 ASN B 97 PHE B 98 0 SHEET 2 AA7 2 VAL B 203 TYR B 204 -1 O TYR B 204 N ASN B 97 SHEET 1 AA8 2 ILE B 231 PRO B 232 0 SHEET 2 AA8 2 TYR B 300 GLU B 301 1 O GLU B 301 N ILE B 231 SHEET 1 AA9 5 TYR B 240 PRO B 244 0 SHEET 2 AA9 5 GLY B 304 LYS B 308 -1 O ILE B 305 N ILE B 243 SHEET 3 AA9 5 ALA B 275 ASN B 277 -1 N PHE B 276 O TYR B 306 SHEET 4 AA9 5 TRP B 281 LYS B 283 -1 O LYS B 283 N ALA B 275 SHEET 5 AA9 5 ASP B 252 GLU B 255 -1 N ILE B 253 O VAL B 282 SHEET 1 AB1 2 LYS B 246 ASP B 247 0 SHEET 2 AB1 2 ILE B 293 ASP B 294 -1 O ILE B 293 N ASP B 247 LINK OD2 ASP A 95 MN MN A 402 1555 1555 2.12 LINK O1A UDP A 401 MN MN A 402 1555 1555 2.18 LINK O2B UDP A 401 MN MN A 402 1555 1555 2.01 LINK MN MN A 402 O HOH A 526 1555 1555 2.18 LINK MN MN A 402 O HOH A 595 1555 1555 2.29 LINK MN MN A 402 O HOH A 664 1555 1555 2.18 LINK OD2 ASP B 95 MN MN B 402 1555 1555 2.13 LINK O1A UDP B 401 MN MN B 402 1555 1555 2.12 LINK O3B UDP B 401 MN MN B 402 1555 1555 2.12 LINK MN MN B 402 O HOH B 524 1555 1555 2.36 LINK MN MN B 402 O HOH B 583 1555 1555 2.18 LINK MN MN B 402 O HOH B 660 1555 1555 2.19 CISPEP 1 HIS A 199 PRO A 200 0 -4.84 CISPEP 2 GLU A 301 SER A 302 0 4.13 CISPEP 3 HIS B 199 PRO B 200 0 -4.27 CISPEP 4 GLU B 301 SER B 302 0 3.72 CRYST1 60.634 96.213 133.454 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007493 0.00000 CONECT 755 5172 CONECT 3337 5198 CONECT 5147 5148 5152 5155 CONECT 5148 5147 5149 5153 CONECT 5149 5148 5150 CONECT 5150 5149 5151 5154 CONECT 5151 5150 5152 CONECT 5152 5147 5151 CONECT 5153 5148 CONECT 5154 5150 CONECT 5155 5147 5156 5160 CONECT 5156 5155 5157 5158 CONECT 5157 5156 CONECT 5158 5156 5159 5161 CONECT 5159 5158 5160 5162 CONECT 5160 5155 5159 CONECT 5161 5158 CONECT 5162 5159 5163 CONECT 5163 5162 5164 CONECT 5164 5163 5165 5166 5167 CONECT 5165 5164 5172 CONECT 5166 5164 CONECT 5167 5164 5168 CONECT 5168 5167 5169 5170 5171 CONECT 5169 5168 CONECT 5170 5168 5172 CONECT 5171 5168 CONECT 5172 755 5165 5170 5224 CONECT 5172 5293 5362 CONECT 5173 5174 5178 5181 CONECT 5174 5173 5175 5179 CONECT 5175 5174 5176 CONECT 5176 5175 5177 5180 CONECT 5177 5176 5178 CONECT 5178 5173 5177 CONECT 5179 5174 CONECT 5180 5176 CONECT 5181 5173 5182 5186 CONECT 5182 5181 5183 5184 CONECT 5183 5182 CONECT 5184 5182 5185 5187 CONECT 5185 5184 5186 5188 CONECT 5186 5181 5185 CONECT 5187 5184 CONECT 5188 5185 5189 CONECT 5189 5188 5190 CONECT 5190 5189 5191 5192 5193 CONECT 5191 5190 5198 CONECT 5192 5190 CONECT 5193 5190 5194 CONECT 5194 5193 5195 5196 5197 CONECT 5195 5194 CONECT 5196 5194 CONECT 5197 5194 5198 CONECT 5198 3337 5191 5197 5444 CONECT 5198 5503 5580 CONECT 5224 5172 CONECT 5293 5172 CONECT 5362 5172 CONECT 5444 5198 CONECT 5503 5198 CONECT 5580 5198 MASTER 378 0 4 25 36 0 0 6 5617 2 62 54 END