data_9CWQ # _entry.id 9CWQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9CWQ pdb_00009cwq 10.2210/pdb9cwq/pdb WWPDB D_1000286444 ? ? EMDB EMD-45971 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-21 ? 2 'EM metadata' 1 0 2026-01-21 ? 3 'Additional map' 1 0 2026-01-21 1 4 'Half map' 1 0 2026-01-21 1 5 'Half map' 1 0 2026-01-21 2 6 Image 1 0 2026-01-21 ? 7 'Primary map' 1 0 2026-01-21 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9CWQ _pdbx_database_status.recvd_initial_deposition_date 2024-07-30 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Local refinement of the SARS-CoV-2 BA.2.86 NTD' _pdbx_database_related.db_id EMD-45971 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dveesler@uw.edu _pdbx_contact_author.name_first David _pdbx_contact_author.name_last Veesler _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6019-8675 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lee, J.' 1 ? 'Veesler, D.' 2 ? 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The computationally designed TRI2-2 miniprotein inhibitor protects against multiple SARS-CoV-2 Omicron variants.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-025-09499-2 _citation.pdbx_database_id_PubMed 41519898 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, J.' 1 ? primary 'Case, J.B.' 2 0000-0001-7331-5511 primary 'Park, Y.J.' 3 0000-0003-2901-6949 primary 'Ravichandran, R.' 4 ? primary 'Asarnow, D.' 5 0000-0001-7870-5308 primary 'Tortorici, M.A.' 6 0000-0002-2260-2577 primary 'Brown, J.T.' 7 ? primary 'Sanapala, S.' 8 ? primary 'Carter, L.' 9 ? primary 'Baker, D.' 10 0000-0001-7896-6217 primary 'Diamond, M.S.' 11 0000-0002-8791-3165 primary 'Veesler, D.' 12 0000-0002-6019-8675 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BA.2.86 Spike protein NTD' 34487.020 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 3 ? ? ? ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MFVFLVLLPLVSSQCVMPLFNLITTTQSYTNSFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAISGTNGTKRFDN PVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVFIKVCEFQFCNDPFLDVYHKNNKSWMESESGVYSS ANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIGRDFPQGFSALEPLVDLPIGINITRFQTLLA LNRSYLTPGDSSSGWTAGAADYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT ; _entity_poly.pdbx_seq_one_letter_code_can ;MFVFLVLLPLVSSQCVMPLFNLITTTQSYTNSFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAISGTNGTKRFDN PVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVFIKVCEFQFCNDPFLDVYHKNNKSWMESESGVYSS ANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIGRDFPQGFSALEPLVDLPIGINITRFQTLLA LNRSYLTPGDSSSGWTAGAADYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 VAL n 1 4 PHE n 1 5 LEU n 1 6 VAL n 1 7 LEU n 1 8 LEU n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 SER n 1 13 SER n 1 14 GLN n 1 15 CYS n 1 16 VAL n 1 17 MET n 1 18 PRO n 1 19 LEU n 1 20 PHE n 1 21 ASN n 1 22 LEU n 1 23 ILE n 1 24 THR n 1 25 THR n 1 26 THR n 1 27 GLN n 1 28 SER n 1 29 TYR n 1 30 THR n 1 31 ASN n 1 32 SER n 1 33 PHE n 1 34 THR n 1 35 ARG n 1 36 GLY n 1 37 VAL n 1 38 TYR n 1 39 TYR n 1 40 PRO n 1 41 ASP n 1 42 LYS n 1 43 VAL n 1 44 PHE n 1 45 ARG n 1 46 SER n 1 47 SER n 1 48 VAL n 1 49 LEU n 1 50 HIS n 1 51 LEU n 1 52 THR n 1 53 GLN n 1 54 ASP n 1 55 LEU n 1 56 PHE n 1 57 LEU n 1 58 PRO n 1 59 PHE n 1 60 PHE n 1 61 SER n 1 62 ASN n 1 63 VAL n 1 64 THR n 1 65 TRP n 1 66 PHE n 1 67 HIS n 1 68 ALA n 1 69 ILE n 1 70 SER n 1 71 GLY n 1 72 THR n 1 73 ASN n 1 74 GLY n 1 75 THR n 1 76 LYS n 1 77 ARG n 1 78 PHE n 1 79 ASP n 1 80 ASN n 1 81 PRO n 1 82 VAL n 1 83 LEU n 1 84 PRO n 1 85 PHE n 1 86 ASN n 1 87 ASP n 1 88 GLY n 1 89 VAL n 1 90 TYR n 1 91 PHE n 1 92 ALA n 1 93 SER n 1 94 THR n 1 95 GLU n 1 96 LYS n 1 97 SER n 1 98 ASN n 1 99 ILE n 1 100 ILE n 1 101 ARG n 1 102 GLY n 1 103 TRP n 1 104 ILE n 1 105 PHE n 1 106 GLY n 1 107 THR n 1 108 THR n 1 109 LEU n 1 110 ASP n 1 111 SER n 1 112 LYS n 1 113 THR n 1 114 GLN n 1 115 SER n 1 116 LEU n 1 117 LEU n 1 118 ILE n 1 119 VAL n 1 120 ASN n 1 121 ASN n 1 122 ALA n 1 123 THR n 1 124 ASN n 1 125 VAL n 1 126 PHE n 1 127 ILE n 1 128 LYS n 1 129 VAL n 1 130 CYS n 1 131 GLU n 1 132 PHE n 1 133 GLN n 1 134 PHE n 1 135 CYS n 1 136 ASN n 1 137 ASP n 1 138 PRO n 1 139 PHE n 1 140 LEU n 1 141 ASP n 1 142 VAL n 1 143 TYR n 1 144 HIS n 1 145 LYS n 1 146 ASN n 1 147 ASN n 1 148 LYS n 1 149 SER n 1 150 TRP n 1 151 MET n 1 152 GLU n 1 153 SER n 1 154 GLU n 1 155 SER n 1 156 GLY n 1 157 VAL n 1 158 TYR n 1 159 SER n 1 160 SER n 1 161 ALA n 1 162 ASN n 1 163 ASN n 1 164 CYS n 1 165 THR n 1 166 PHE n 1 167 GLU n 1 168 TYR n 1 169 VAL n 1 170 SER n 1 171 GLN n 1 172 PRO n 1 173 PHE n 1 174 LEU n 1 175 MET n 1 176 ASP n 1 177 LEU n 1 178 GLU n 1 179 GLY n 1 180 LYS n 1 181 GLN n 1 182 GLY n 1 183 ASN n 1 184 PHE n 1 185 LYS n 1 186 ASN n 1 187 LEU n 1 188 ARG n 1 189 GLU n 1 190 PHE n 1 191 VAL n 1 192 PHE n 1 193 LYS n 1 194 ASN n 1 195 ILE n 1 196 ASP n 1 197 GLY n 1 198 TYR n 1 199 PHE n 1 200 LYS n 1 201 ILE n 1 202 TYR n 1 203 SER n 1 204 LYS n 1 205 HIS n 1 206 THR n 1 207 PRO n 1 208 ILE n 1 209 ILE n 1 210 GLY n 1 211 ARG n 1 212 ASP n 1 213 PHE n 1 214 PRO n 1 215 GLN n 1 216 GLY n 1 217 PHE n 1 218 SER n 1 219 ALA n 1 220 LEU n 1 221 GLU n 1 222 PRO n 1 223 LEU n 1 224 VAL n 1 225 ASP n 1 226 LEU n 1 227 PRO n 1 228 ILE n 1 229 GLY n 1 230 ILE n 1 231 ASN n 1 232 ILE n 1 233 THR n 1 234 ARG n 1 235 PHE n 1 236 GLN n 1 237 THR n 1 238 LEU n 1 239 LEU n 1 240 ALA n 1 241 LEU n 1 242 ASN n 1 243 ARG n 1 244 SER n 1 245 TYR n 1 246 LEU n 1 247 THR n 1 248 PRO n 1 249 GLY n 1 250 ASP n 1 251 SER n 1 252 SER n 1 253 SER n 1 254 GLY n 1 255 TRP n 1 256 THR n 1 257 ALA n 1 258 GLY n 1 259 ALA n 1 260 ALA n 1 261 ASP n 1 262 TYR n 1 263 TYR n 1 264 VAL n 1 265 GLY n 1 266 TYR n 1 267 LEU n 1 268 GLN n 1 269 PRO n 1 270 ARG n 1 271 THR n 1 272 PHE n 1 273 LEU n 1 274 LEU n 1 275 LYS n 1 276 TYR n 1 277 ASN n 1 278 GLU n 1 279 ASN n 1 280 GLY n 1 281 THR n 1 282 ILE n 1 283 THR n 1 284 ASP n 1 285 ALA n 1 286 VAL n 1 287 ASP n 1 288 CYS n 1 289 ALA n 1 290 LEU n 1 291 ASP n 1 292 PRO n 1 293 LEU n 1 294 SER n 1 295 GLU n 1 296 THR n 1 297 LYS n 1 298 CYS n 1 299 THR n 1 300 LEU n 1 301 LYS n 1 302 SER n 1 303 PHE n 1 304 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 304 _entity_src_gen.gene_src_common_name '2019-nCoV, SARS-CoV-2' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PHE 2 2 ? ? ? A . n A 1 3 VAL 3 3 ? ? ? A . n A 1 4 PHE 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 VAL 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 LEU 8 8 ? ? ? A . n A 1 9 PRO 9 9 ? ? ? A . n A 1 10 LEU 10 10 ? ? ? A . n A 1 11 VAL 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 SER 13 13 ? ? ? A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 LEU 19 19 ? ? ? A . n A 1 20 PHE 20 20 ? ? ? A . n A 1 21 ASN 21 21 ? ? ? A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 TRP 65 65 65 TRP TRP A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLY 71 72 ? ? ? A . n A 1 72 THR 72 73 ? ? ? A . n A 1 73 ASN 73 74 ? ? ? A . n A 1 74 GLY 74 75 ? ? ? A . n A 1 75 THR 75 76 ? ? ? A . n A 1 76 LYS 76 77 ? ? ? A . n A 1 77 ARG 77 78 ? ? ? A . n A 1 78 PHE 78 79 ? ? ? A . n A 1 79 ASP 79 80 ? ? ? A . n A 1 80 ASN 80 81 81 ASN ASN A . n A 1 81 PRO 81 82 82 PRO PRO A . n A 1 82 VAL 82 83 83 VAL VAL A . n A 1 83 LEU 83 84 84 LEU LEU A . n A 1 84 PRO 84 85 85 PRO PRO A . n A 1 85 PHE 85 86 86 PHE PHE A . n A 1 86 ASN 86 87 87 ASN ASN A . n A 1 87 ASP 87 88 88 ASP ASP A . n A 1 88 GLY 88 89 89 GLY GLY A . n A 1 89 VAL 89 90 90 VAL VAL A . n A 1 90 TYR 90 91 91 TYR TYR A . n A 1 91 PHE 91 92 92 PHE PHE A . n A 1 92 ALA 92 93 93 ALA ALA A . n A 1 93 SER 93 94 94 SER SER A . n A 1 94 THR 94 95 95 THR THR A . n A 1 95 GLU 95 96 96 GLU GLU A . n A 1 96 LYS 96 97 97 LYS LYS A . n A 1 97 SER 97 98 98 SER SER A . n A 1 98 ASN 98 99 99 ASN ASN A . n A 1 99 ILE 99 100 100 ILE ILE A . n A 1 100 ILE 100 101 101 ILE ILE A . n A 1 101 ARG 101 102 102 ARG ARG A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 TRP 103 104 104 TRP TRP A . n A 1 104 ILE 104 105 105 ILE ILE A . n A 1 105 PHE 105 106 106 PHE PHE A . n A 1 106 GLY 106 107 107 GLY GLY A . n A 1 107 THR 107 108 108 THR THR A . n A 1 108 THR 108 109 109 THR THR A . n A 1 109 LEU 109 110 110 LEU LEU A . n A 1 110 ASP 110 111 111 ASP ASP A . n A 1 111 SER 111 112 112 SER SER A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 THR 113 114 114 THR THR A . n A 1 114 GLN 114 115 115 GLN GLN A . n A 1 115 SER 115 116 116 SER SER A . n A 1 116 LEU 116 117 117 LEU LEU A . n A 1 117 LEU 117 118 118 LEU LEU A . n A 1 118 ILE 118 119 119 ILE ILE A . n A 1 119 VAL 119 120 120 VAL VAL A . n A 1 120 ASN 120 121 121 ASN ASN A . n A 1 121 ASN 121 122 122 ASN ASN A . n A 1 122 ALA 122 123 123 ALA ALA A . n A 1 123 THR 123 124 124 THR THR A . n A 1 124 ASN 124 125 125 ASN ASN A . n A 1 125 VAL 125 126 126 VAL VAL A . n A 1 126 PHE 126 127 127 PHE PHE A . n A 1 127 ILE 127 128 128 ILE ILE A . n A 1 128 LYS 128 129 129 LYS LYS A . n A 1 129 VAL 129 130 130 VAL VAL A . n A 1 130 CYS 130 131 131 CYS CYS A . n A 1 131 GLU 131 132 132 GLU GLU A . n A 1 132 PHE 132 133 133 PHE PHE A . n A 1 133 GLN 133 134 134 GLN GLN A . n A 1 134 PHE 134 135 135 PHE PHE A . n A 1 135 CYS 135 136 136 CYS CYS A . n A 1 136 ASN 136 137 137 ASN ASN A . n A 1 137 ASP 137 138 138 ASP ASP A . n A 1 138 PRO 138 139 139 PRO PRO A . n A 1 139 PHE 139 140 140 PHE PHE A . n A 1 140 LEU 140 141 141 LEU LEU A . n A 1 141 ASP 141 142 142 ASP ASP A . n A 1 142 VAL 142 143 143 VAL VAL A . n A 1 143 TYR 143 144 144 TYR TYR A . n A 1 144 HIS 144 146 ? ? ? A . n A 1 145 LYS 145 147 ? ? ? A . n A 1 146 ASN 146 148 ? ? ? A . n A 1 147 ASN 147 149 ? ? ? A . n A 1 148 LYS 148 150 ? ? ? A . n A 1 149 SER 149 151 ? ? ? A . n A 1 150 TRP 150 152 ? ? ? A . n A 1 151 MET 151 153 153 MET MET A . n A 1 152 GLU 152 154 154 GLU GLU A . n A 1 153 SER 153 155 155 SER SER A . n A 1 154 GLU 154 156 156 GLU GLU A . n A 1 155 SER 155 157 157 SER SER A . n A 1 156 GLY 156 158 158 GLY GLY A . n A 1 157 VAL 157 159 159 VAL VAL A . n A 1 158 TYR 158 160 160 TYR TYR A . n A 1 159 SER 159 161 161 SER SER A . n A 1 160 SER 160 162 162 SER SER A . n A 1 161 ALA 161 163 163 ALA ALA A . n A 1 162 ASN 162 164 164 ASN ASN A . n A 1 163 ASN 163 165 165 ASN ASN A . n A 1 164 CYS 164 166 166 CYS CYS A . n A 1 165 THR 165 167 167 THR THR A . n A 1 166 PHE 166 168 168 PHE PHE A . n A 1 167 GLU 167 169 169 GLU GLU A . n A 1 168 TYR 168 170 170 TYR TYR A . n A 1 169 VAL 169 171 171 VAL VAL A . n A 1 170 SER 170 172 172 SER SER A . n A 1 171 GLN 171 173 173 GLN GLN A . n A 1 172 PRO 172 174 174 PRO PRO A . n A 1 173 PHE 173 175 175 PHE PHE A . n A 1 174 LEU 174 176 176 LEU LEU A . n A 1 175 MET 175 177 177 MET MET A . n A 1 176 ASP 176 178 ? ? ? A . n A 1 177 LEU 177 179 ? ? ? A . n A 1 178 GLU 178 180 ? ? ? A . n A 1 179 GLY 179 181 ? ? ? A . n A 1 180 LYS 180 182 ? ? ? A . n A 1 181 GLN 181 183 ? ? ? A . n A 1 182 GLY 182 184 ? ? ? A . n A 1 183 ASN 183 185 ? ? ? A . n A 1 184 PHE 184 186 ? ? ? A . n A 1 185 LYS 185 187 ? ? ? A . n A 1 186 ASN 186 188 188 ASN ASN A . n A 1 187 LEU 187 189 189 LEU LEU A . n A 1 188 ARG 188 190 190 ARG ARG A . n A 1 189 GLU 189 191 191 GLU GLU A . n A 1 190 PHE 190 192 192 PHE PHE A . n A 1 191 VAL 191 193 193 VAL VAL A . n A 1 192 PHE 192 194 194 PHE PHE A . n A 1 193 LYS 193 195 195 LYS LYS A . n A 1 194 ASN 194 196 196 ASN ASN A . n A 1 195 ILE 195 197 197 ILE ILE A . n A 1 196 ASP 196 198 198 ASP ASP A . n A 1 197 GLY 197 199 199 GLY GLY A . n A 1 198 TYR 198 200 200 TYR TYR A . n A 1 199 PHE 199 201 201 PHE PHE A . n A 1 200 LYS 200 202 202 LYS LYS A . n A 1 201 ILE 201 203 203 ILE ILE A . n A 1 202 TYR 202 204 204 TYR TYR A . n A 1 203 SER 203 205 205 SER SER A . n A 1 204 LYS 204 206 206 LYS LYS A . n A 1 205 HIS 205 207 207 HIS HIS A . n A 1 206 THR 206 208 208 THR THR A . n A 1 207 PRO 207 209 209 PRO PRO A . n A 1 208 ILE 208 210 210 ILE ILE A . n A 1 209 ILE 209 212 212 ILE ILE A . n A 1 210 GLY 210 213 ? ? ? A . n A 1 211 ARG 211 214 ? ? ? A . n A 1 212 ASP 212 215 215 ASP ASP A . n A 1 213 PHE 213 216 216 PHE PHE A . n A 1 214 PRO 214 217 217 PRO PRO A . n A 1 215 GLN 215 218 218 GLN GLN A . n A 1 216 GLY 216 219 219 GLY GLY A . n A 1 217 PHE 217 220 220 PHE PHE A . n A 1 218 SER 218 221 221 SER SER A . n A 1 219 ALA 219 222 222 ALA ALA A . n A 1 220 LEU 220 223 223 LEU LEU A . n A 1 221 GLU 221 224 224 GLU GLU A . n A 1 222 PRO 222 225 225 PRO PRO A . n A 1 223 LEU 223 226 226 LEU LEU A . n A 1 224 VAL 224 227 227 VAL VAL A . n A 1 225 ASP 225 228 228 ASP ASP A . n A 1 226 LEU 226 229 229 LEU LEU A . n A 1 227 PRO 227 230 230 PRO PRO A . n A 1 228 ILE 228 231 231 ILE ILE A . n A 1 229 GLY 229 232 232 GLY GLY A . n A 1 230 ILE 230 233 233 ILE ILE A . n A 1 231 ASN 231 234 234 ASN ASN A . n A 1 232 ILE 232 235 235 ILE ILE A . n A 1 233 THR 233 236 236 THR THR A . n A 1 234 ARG 234 237 237 ARG ARG A . n A 1 235 PHE 235 238 238 PHE PHE A . n A 1 236 GLN 236 239 239 GLN GLN A . n A 1 237 THR 237 240 240 THR THR A . n A 1 238 LEU 238 241 241 LEU LEU A . n A 1 239 LEU 239 242 242 LEU LEU A . n A 1 240 ALA 240 243 243 ALA ALA A . n A 1 241 LEU 241 244 244 LEU LEU A . n A 1 242 ASN 242 245 245 ASN ASN A . n A 1 243 ARG 243 246 246 ARG ARG A . n A 1 244 SER 244 247 247 SER SER A . n A 1 245 TYR 245 248 248 TYR TYR A . n A 1 246 LEU 246 249 ? ? ? A . n A 1 247 THR 247 250 ? ? ? A . n A 1 248 PRO 248 251 ? ? ? A . n A 1 249 GLY 249 252 ? ? ? A . n A 1 250 ASP 250 253 ? ? ? A . n A 1 251 SER 251 254 ? ? ? A . n A 1 252 SER 252 255 ? ? ? A . n A 1 253 SER 253 256 ? ? ? A . n A 1 254 GLY 254 257 ? ? ? A . n A 1 255 TRP 255 258 ? ? ? A . n A 1 256 THR 256 259 ? ? ? A . n A 1 257 ALA 257 260 ? ? ? A . n A 1 258 GLY 258 261 261 GLY GLY A . n A 1 259 ALA 259 262 262 ALA ALA A . n A 1 260 ALA 260 263 263 ALA ALA A . n A 1 261 ASP 261 264 264 ASP ASP A . n A 1 262 TYR 262 265 265 TYR TYR A . n A 1 263 TYR 263 266 266 TYR TYR A . n A 1 264 VAL 264 267 267 VAL VAL A . n A 1 265 GLY 265 268 268 GLY GLY A . n A 1 266 TYR 266 269 269 TYR TYR A . n A 1 267 LEU 267 270 270 LEU LEU A . n A 1 268 GLN 268 271 271 GLN GLN A . n A 1 269 PRO 269 272 272 PRO PRO A . n A 1 270 ARG 270 273 273 ARG ARG A . n A 1 271 THR 271 274 274 THR THR A . n A 1 272 PHE 272 275 275 PHE PHE A . n A 1 273 LEU 273 276 276 LEU LEU A . n A 1 274 LEU 274 277 277 LEU LEU A . n A 1 275 LYS 275 278 278 LYS LYS A . n A 1 276 TYR 276 279 279 TYR TYR A . n A 1 277 ASN 277 280 280 ASN ASN A . n A 1 278 GLU 278 281 281 GLU GLU A . n A 1 279 ASN 279 282 282 ASN ASN A . n A 1 280 GLY 280 283 283 GLY GLY A . n A 1 281 THR 281 284 284 THR THR A . n A 1 282 ILE 282 285 285 ILE ILE A . n A 1 283 THR 283 286 286 THR THR A . n A 1 284 ASP 284 287 287 ASP ASP A . n A 1 285 ALA 285 288 288 ALA ALA A . n A 1 286 VAL 286 289 289 VAL VAL A . n A 1 287 ASP 287 290 290 ASP ASP A . n A 1 288 CYS 288 291 291 CYS CYS A . n A 1 289 ALA 289 292 292 ALA ALA A . n A 1 290 LEU 290 293 293 LEU LEU A . n A 1 291 ASP 291 294 294 ASP ASP A . n A 1 292 PRO 292 295 295 PRO PRO A . n A 1 293 LEU 293 296 296 LEU LEU A . n A 1 294 SER 294 297 297 SER SER A . n A 1 295 GLU 295 298 298 GLU GLU A . n A 1 296 THR 296 299 299 THR THR A . n A 1 297 LYS 297 300 300 LYS LYS A . n A 1 298 CYS 298 301 301 CYS CYS A . n A 1 299 THR 299 302 302 THR THR A . n A 1 300 LEU 300 303 303 LEU LEU A . n A 1 301 LYS 301 304 304 LYS LYS A . n A 1 302 SER 302 305 305 SER SER A . n A 1 303 PHE 303 306 306 PHE PHE A . n A 1 304 THR 304 307 307 THR THR A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 340 n B 2 NAG 2 B NAG 2 A NAG 341 n C 2 NAG 1 C NAG 1 A NAG 342 n C 2 NAG 2 C NAG 2 A NAG 343 n D 2 NAG 1 D NAG 1 A NAG 346 n D 2 NAG 2 D NAG 2 A NAG 347 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG 1 401 339 NAG NAG A . F 3 NAG 1 402 344 NAG NAG A . G 3 NAG 1 403 345 NAG NAG A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 14 ? CG ? A GLN 14 CG 2 1 Y 1 A GLN 14 ? CD ? A GLN 14 CD 3 1 Y 1 A GLN 14 ? OE1 ? A GLN 14 OE1 4 1 Y 1 A GLN 14 ? NE2 ? A GLN 14 NE2 5 1 Y 1 A THR 26 ? OG1 ? A THR 26 OG1 6 1 Y 1 A THR 26 ? CG2 ? A THR 26 CG2 7 1 Y 1 A GLN 27 ? CG ? A GLN 27 CG 8 1 Y 1 A GLN 27 ? CD ? A GLN 27 CD 9 1 Y 1 A GLN 27 ? OE1 ? A GLN 27 OE1 10 1 Y 1 A GLN 27 ? NE2 ? A GLN 27 NE2 11 1 Y 1 A TYR 29 ? CG ? A TYR 29 CG 12 1 Y 1 A TYR 29 ? CD1 ? A TYR 29 CD1 13 1 Y 1 A TYR 29 ? CD2 ? A TYR 29 CD2 14 1 Y 1 A TYR 29 ? CE1 ? A TYR 29 CE1 15 1 Y 1 A TYR 29 ? CE2 ? A TYR 29 CE2 16 1 Y 1 A TYR 29 ? CZ ? A TYR 29 CZ 17 1 Y 1 A TYR 29 ? OH ? A TYR 29 OH 18 1 Y 1 A SER 32 ? OG ? A SER 32 OG 19 1 Y 1 A SER 70 ? OG ? A SER 70 OG 20 1 Y 1 A VAL 83 ? CG1 ? A VAL 82 CG1 21 1 Y 1 A VAL 83 ? CG2 ? A VAL 82 CG2 22 1 Y 1 A ASP 88 ? CG ? A ASP 87 CG 23 1 Y 1 A ASP 88 ? OD1 ? A ASP 87 OD1 24 1 Y 1 A ASP 88 ? OD2 ? A ASP 87 OD2 25 1 Y 1 A THR 95 ? OG1 ? A THR 94 OG1 26 1 Y 1 A THR 95 ? CG2 ? A THR 94 CG2 27 1 Y 1 A SER 98 ? OG ? A SER 97 OG 28 1 Y 1 A ASN 99 ? CG ? A ASN 98 CG 29 1 Y 1 A ASN 99 ? OD1 ? A ASN 98 OD1 30 1 Y 1 A ASN 99 ? ND2 ? A ASN 98 ND2 31 1 Y 1 A SER 112 ? OG ? A SER 111 OG 32 1 Y 1 A THR 124 ? OG1 ? A THR 123 OG1 33 1 Y 1 A THR 124 ? CG2 ? A THR 123 CG2 34 1 Y 1 A ASN 125 ? CG ? A ASN 124 CG 35 1 Y 1 A ASN 125 ? OD1 ? A ASN 124 OD1 36 1 Y 1 A ASN 125 ? ND2 ? A ASN 124 ND2 37 1 Y 1 A ASN 137 ? CG ? A ASN 136 CG 38 1 Y 1 A ASN 137 ? OD1 ? A ASN 136 OD1 39 1 Y 1 A ASN 137 ? ND2 ? A ASN 136 ND2 40 1 Y 1 A ASP 142 ? CG ? A ASP 141 CG 41 1 Y 1 A ASP 142 ? OD1 ? A ASP 141 OD1 42 1 Y 1 A ASP 142 ? OD2 ? A ASP 141 OD2 43 1 Y 1 A VAL 143 ? CG1 ? A VAL 142 CG1 44 1 Y 1 A VAL 143 ? CG2 ? A VAL 142 CG2 45 1 Y 1 A TYR 144 ? CG ? A TYR 143 CG 46 1 Y 1 A TYR 144 ? CD1 ? A TYR 143 CD1 47 1 Y 1 A TYR 144 ? CD2 ? A TYR 143 CD2 48 1 Y 1 A TYR 144 ? CE1 ? A TYR 143 CE1 49 1 Y 1 A TYR 144 ? CE2 ? A TYR 143 CE2 50 1 Y 1 A TYR 144 ? CZ ? A TYR 143 CZ 51 1 Y 1 A TYR 144 ? OH ? A TYR 143 OH 52 1 Y 1 A GLU 154 ? CG ? A GLU 152 CG 53 1 Y 1 A GLU 154 ? CD ? A GLU 152 CD 54 1 Y 1 A GLU 154 ? OE1 ? A GLU 152 OE1 55 1 Y 1 A GLU 154 ? OE2 ? A GLU 152 OE2 56 1 Y 1 A SER 155 ? OG ? A SER 153 OG 57 1 Y 1 A GLU 156 ? CG ? A GLU 154 CG 58 1 Y 1 A GLU 156 ? CD ? A GLU 154 CD 59 1 Y 1 A GLU 156 ? OE1 ? A GLU 154 OE1 60 1 Y 1 A GLU 156 ? OE2 ? A GLU 154 OE2 61 1 Y 1 A SER 157 ? OG ? A SER 155 OG 62 1 Y 1 A SER 162 ? OG ? A SER 160 OG 63 1 Y 1 A THR 167 ? OG1 ? A THR 165 OG1 64 1 Y 1 A THR 167 ? CG2 ? A THR 165 CG2 65 1 Y 1 A GLU 169 ? CG ? A GLU 167 CG 66 1 Y 1 A GLU 169 ? CD ? A GLU 167 CD 67 1 Y 1 A GLU 169 ? OE1 ? A GLU 167 OE1 68 1 Y 1 A GLU 169 ? OE2 ? A GLU 167 OE2 69 1 Y 1 A SER 172 ? OG ? A SER 170 OG 70 1 Y 1 A MET 177 ? CG ? A MET 175 CG 71 1 Y 1 A MET 177 ? SD ? A MET 175 SD 72 1 Y 1 A MET 177 ? CE ? A MET 175 CE 73 1 Y 1 A ASN 188 ? CG ? A ASN 186 CG 74 1 Y 1 A ASN 188 ? OD1 ? A ASN 186 OD1 75 1 Y 1 A ASN 188 ? ND2 ? A ASN 186 ND2 76 1 Y 1 A ASP 198 ? CG ? A ASP 196 CG 77 1 Y 1 A ASP 198 ? OD1 ? A ASP 196 OD1 78 1 Y 1 A ASP 198 ? OD2 ? A ASP 196 OD2 79 1 Y 1 A SER 205 ? OG ? A SER 203 OG 80 1 Y 1 A THR 208 ? OG1 ? A THR 206 OG1 81 1 Y 1 A THR 208 ? CG2 ? A THR 206 CG2 82 1 Y 1 A ILE 210 ? CG1 ? A ILE 208 CG1 83 1 Y 1 A ILE 210 ? CG2 ? A ILE 208 CG2 84 1 Y 1 A ILE 210 ? CD1 ? A ILE 208 CD1 85 1 Y 1 A ILE 212 ? CG1 ? A ILE 209 CG1 86 1 Y 1 A ILE 212 ? CG2 ? A ILE 209 CG2 87 1 Y 1 A ILE 212 ? CD1 ? A ILE 209 CD1 88 1 Y 1 A ASP 215 ? CG ? A ASP 212 CG 89 1 Y 1 A ASP 215 ? OD1 ? A ASP 212 OD1 90 1 Y 1 A ASP 215 ? OD2 ? A ASP 212 OD2 91 1 Y 1 A GLN 218 ? CG ? A GLN 215 CG 92 1 Y 1 A GLN 218 ? CD ? A GLN 215 CD 93 1 Y 1 A GLN 218 ? OE1 ? A GLN 215 OE1 94 1 Y 1 A GLN 218 ? NE2 ? A GLN 215 NE2 95 1 Y 1 A ASP 228 ? CG ? A ASP 225 CG 96 1 Y 1 A ASP 228 ? OD1 ? A ASP 225 OD1 97 1 Y 1 A ASP 228 ? OD2 ? A ASP 225 OD2 98 1 Y 1 A ILE 233 ? CG1 ? A ILE 230 CG1 99 1 Y 1 A ILE 233 ? CG2 ? A ILE 230 CG2 100 1 Y 1 A ILE 233 ? CD1 ? A ILE 230 CD1 101 1 Y 1 A THR 236 ? OG1 ? A THR 233 OG1 102 1 Y 1 A THR 236 ? CG2 ? A THR 233 CG2 103 1 Y 1 A LEU 244 ? CG ? A LEU 241 CG 104 1 Y 1 A LEU 244 ? CD1 ? A LEU 241 CD1 105 1 Y 1 A LEU 244 ? CD2 ? A LEU 241 CD2 106 1 Y 1 A SER 247 ? OG ? A SER 244 OG 107 1 Y 1 A GLU 281 ? CG ? A GLU 278 CG 108 1 Y 1 A GLU 281 ? CD ? A GLU 278 CD 109 1 Y 1 A GLU 281 ? OE1 ? A GLU 278 OE1 110 1 Y 1 A GLU 281 ? OE2 ? A GLU 278 OE2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9CWQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9CWQ _struct.title 'Local refinement of the SARS-CoV-2 BA.2.86 NTD' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9CWQ _struct_keywords.text ;Sarbecoviruses, Spike glycoprotein, Structural Genomic, inhibitor, viral protein, minibinder, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9CWQ _struct_ref.pdbx_db_accession 9CWQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9CWQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 304 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9CWQ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 307 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 307 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 291 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 300 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 294 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 303 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 135 SG ? ? A CYS 15 A CYS 136 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 130 SG ? ? ? 1_555 A CYS 164 SG ? ? A CYS 131 A CYS 166 1_555 ? ? ? ? ? ? ? 2.180 ? ? disulf3 disulf ? ? A CYS 288 SG ? ? ? 1_555 A CYS 298 SG ? ? A CYS 291 A CYS 301 1_555 ? ? ? ? ? ? ? 2.013 ? ? covale1 covale one ? A ASN 62 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 62 A NAG 403 1_555 ? ? ? ? ? ? ? 1.508 ? N-Glycosylation covale2 covale one ? A ASN 121 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 122 D NAG 1 1_555 ? ? ? ? ? ? ? 1.498 ? N-Glycosylation covale3 covale one ? A ASN 163 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 165 A NAG 402 1_555 ? ? ? ? ? ? ? 1.502 ? N-Glycosylation covale4 covale one ? A ASN 231 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 234 A NAG 401 1_555 ? ? ? ? ? ? ? 1.489 ? N-Glycosylation covale5 covale one ? A ASN 242 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 245 C NAG 1 1_555 ? ? ? ? ? ? ? 1.503 ? N-Glycosylation covale6 covale one ? A ASN 279 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 282 B NAG 1 1_555 ? ? ? ? ? ? ? 1.494 ? N-Glycosylation covale7 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.500 ? ? covale8 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.498 ? ? covale9 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.503 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG B . ? ASN A 279 ? NAG B 1 ? 1_555 ASN A 282 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG C . ? ASN A 242 ? NAG C 1 ? 1_555 ASN A 245 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG D . ? ASN A 121 ? NAG D 1 ? 1_555 ASN A 122 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 NAG E . ? ASN A 231 ? NAG A 401 ? 1_555 ASN A 234 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 5 NAG F . ? ASN A 163 ? NAG A 402 ? 1_555 ASN A 165 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 6 NAG G . ? ASN A 62 ? NAG A 403 ? 1_555 ASN A 62 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 7 CYS A 15 ? CYS A 135 ? CYS A 15 ? 1_555 CYS A 136 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS A 130 ? CYS A 164 ? CYS A 131 ? 1_555 CYS A 166 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS A 288 ? CYS A 298 ? CYS A 291 ? 1_555 CYS A 301 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 3 ? AA3 ? 6 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 24 ? ASN A 31 ? THR A 24 ASN A 31 AA1 2 ASN A 62 ? ILE A 69 ? ASN A 62 ILE A 69 AA1 3 ALA A 259 ? TYR A 266 ? ALA A 262 TYR A 269 AA1 4 VAL A 89 ? SER A 93 ? VAL A 90 SER A 94 AA1 5 LEU A 187 ? ILE A 195 ? LEU A 189 ILE A 197 AA1 6 TYR A 198 ? THR A 206 ? TYR A 200 THR A 208 AA1 7 GLU A 221 ? PRO A 227 ? GLU A 224 PRO A 230 AA2 1 LEU A 49 ? PHE A 56 ? LEU A 49 PHE A 56 AA2 2 GLN A 268 ? TYR A 276 ? GLN A 271 TYR A 279 AA2 3 ILE A 282 ? ASP A 287 ? ILE A 285 ASP A 290 AA3 1 LEU A 83 ? PRO A 84 ? LEU A 84 PRO A 85 AA3 2 ARG A 234 ? ASN A 242 ? ARG A 237 ASN A 245 AA3 3 ILE A 100 ? GLY A 106 ? ILE A 101 GLY A 107 AA3 4 SER A 115 ? ASN A 120 ? SER A 116 ASN A 121 AA3 5 VAL A 125 ? VAL A 142 ? VAL A 126 VAL A 143 AA3 6 SER A 153 ? SER A 170 ? SER A 155 SER A 172 AA4 1 LEU A 83 ? PRO A 84 ? LEU A 84 PRO A 85 AA4 2 ARG A 234 ? ASN A 242 ? ARG A 237 ASN A 245 AA4 3 VAL A 125 ? VAL A 142 ? VAL A 126 VAL A 143 AA4 4 SER A 153 ? SER A 170 ? SER A 155 SER A 172 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 28 ? N SER A 28 O TRP A 65 ? O TRP A 65 AA1 2 3 N PHE A 66 ? N PHE A 66 O TYR A 262 ? O TYR A 265 AA1 3 4 O TYR A 263 ? O TYR A 266 N ALA A 92 ? N ALA A 93 AA1 4 5 N PHE A 91 ? N PHE A 92 O PHE A 190 ? O PHE A 192 AA1 5 6 N LEU A 187 ? N LEU A 189 O THR A 206 ? O THR A 208 AA1 6 7 N ILE A 201 ? N ILE A 203 O LEU A 223 ? O LEU A 226 AA2 1 2 N HIS A 50 ? N HIS A 50 O LEU A 274 ? O LEU A 277 AA2 2 3 N LYS A 275 ? N LYS A 278 O THR A 283 ? O THR A 286 AA3 1 2 N LEU A 83 ? N LEU A 84 O PHE A 235 ? O PHE A 238 AA3 2 3 O ARG A 234 ? O ARG A 237 N GLY A 106 ? N GLY A 107 AA3 3 4 N ARG A 101 ? N ARG A 102 O ASN A 120 ? O ASN A 121 AA3 4 5 N SER A 115 ? N SER A 116 O CYS A 130 ? O CYS A 131 AA3 5 6 N ILE A 127 ? N ILE A 128 O TYR A 168 ? O TYR A 170 AA4 1 2 N LEU A 83 ? N LEU A 84 O PHE A 235 ? O PHE A 238 AA4 2 3 O LEU A 241 ? O LEU A 244 N LEU A 140 ? N LEU A 141 AA4 3 4 N ILE A 127 ? N ILE A 128 O TYR A 168 ? O TYR A 170 # _pdbx_entry_details.entry_id 9CWQ _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 33 ? ? 48.85 -119.40 2 1 ASN A 87 ? ? 52.66 -122.87 3 1 ARG A 102 ? ? -146.30 37.22 4 1 THR A 108 ? ? -115.62 -81.42 5 1 ASP A 138 ? ? 64.10 65.15 6 1 ASN A 165 ? ? 70.94 -64.43 7 1 CYS A 166 ? ? 48.43 75.32 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9CWQ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9CWQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 2330259 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'SARS-CoV-2 BA.2.86 NTD' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9CWQ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9CWQ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9CWQ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PHE 2 ? A PHE 2 3 1 Y 1 A VAL 3 ? A VAL 3 4 1 Y 1 A PHE 4 ? A PHE 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A VAL 6 ? A VAL 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A LEU 8 ? A LEU 8 9 1 Y 1 A PRO 9 ? A PRO 9 10 1 Y 1 A LEU 10 ? A LEU 10 11 1 Y 1 A VAL 11 ? A VAL 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A SER 13 ? A SER 13 14 1 Y 1 A LEU 19 ? A LEU 19 15 1 Y 1 A PHE 20 ? A PHE 20 16 1 Y 1 A ASN 21 ? A ASN 21 17 1 Y 1 A GLY 72 ? A GLY 71 18 1 Y 1 A THR 73 ? A THR 72 19 1 Y 1 A ASN 74 ? A ASN 73 20 1 Y 1 A GLY 75 ? A GLY 74 21 1 Y 1 A THR 76 ? A THR 75 22 1 Y 1 A LYS 77 ? A LYS 76 23 1 Y 1 A ARG 78 ? A ARG 77 24 1 Y 1 A PHE 79 ? A PHE 78 25 1 Y 1 A ASP 80 ? A ASP 79 26 1 Y 1 A HIS 146 ? A HIS 144 27 1 Y 1 A LYS 147 ? A LYS 145 28 1 Y 1 A ASN 148 ? A ASN 146 29 1 Y 1 A ASN 149 ? A ASN 147 30 1 Y 1 A LYS 150 ? A LYS 148 31 1 Y 1 A SER 151 ? A SER 149 32 1 Y 1 A TRP 152 ? A TRP 150 33 1 Y 1 A ASP 178 ? A ASP 176 34 1 Y 1 A LEU 179 ? A LEU 177 35 1 Y 1 A GLU 180 ? A GLU 178 36 1 Y 1 A GLY 181 ? A GLY 179 37 1 Y 1 A LYS 182 ? A LYS 180 38 1 Y 1 A GLN 183 ? A GLN 181 39 1 Y 1 A GLY 184 ? A GLY 182 40 1 Y 1 A ASN 185 ? A ASN 183 41 1 Y 1 A PHE 186 ? A PHE 184 42 1 Y 1 A LYS 187 ? A LYS 185 43 1 Y 1 A GLY 213 ? A GLY 210 44 1 Y 1 A ARG 214 ? A ARG 211 45 1 Y 1 A LEU 249 ? A LEU 246 46 1 Y 1 A THR 250 ? A THR 247 47 1 Y 1 A PRO 251 ? A PRO 248 48 1 Y 1 A GLY 252 ? A GLY 249 49 1 Y 1 A ASP 253 ? A ASP 250 50 1 Y 1 A SER 254 ? A SER 251 51 1 Y 1 A SER 255 ? A SER 252 52 1 Y 1 A SER 256 ? A SER 253 53 1 Y 1 A GLY 257 ? A GLY 254 54 1 Y 1 A TRP 258 ? A TRP 255 55 1 Y 1 A THR 259 ? A THR 256 56 1 Y 1 A ALA 260 ? A ALA 257 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_admin.current_status REL _em_admin.deposition_date 2024-07-30 _em_admin.deposition_site RCSB _em_admin.entry_id 9CWQ _em_admin.last_update 2026-01-21 _em_admin.map_release_date 2026-01-21 _em_admin.title 'Local refinement of the SARS-CoV-2 BA.2.86 NTD' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 2833184 _em_entity_assembly_naturalsource.organism 'Sarbecovirus sp.' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 53.25 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AI158186 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # _atom_sites.entry_id 9CWQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #