HEADER IMMUNE SYSTEM 02-AUG-24 9CYM TITLE STRUCTURE OF LAG3 BOUND TO THE MHC CLASS II MOLECULE I-A(B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED LYMPHOCYTE ACTIVATION GENE 3 PROTEIN; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: SLAG-3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN; COMPND 8 CHAIN: A; COMPND 9 SYNONYM: IAALPHA; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CLASS-II-ASSOCIATED INVARIANT CHAIN PEPTIDE; COMPND 13 CHAIN: P; COMPND 14 SYNONYM: CLIP; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN; COMPND 18 CHAIN: B; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LAG3; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: H2-AA; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: CD74, DHLAG; SOURCE 22 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 23 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 27 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 28 ORGANISM_TAXID: 10090; SOURCE 29 GENE: H2-AB1, H2-IABETA; SOURCE 30 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 31 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS LAG3, MHC CLASS II, IMMUNE CHECKPOINT, T CELL, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Q.MING,D.ANTFOLK,T.H.TRAN,V.C.LUCA REVDAT 1 21-AUG-24 9CYM 0 JRNL AUTH Q.MING,D.ANTFOLK,T.H.TRAN,V.C.LUCA JRNL TITL STRUCTURAL BASIS FOR LAG3 INTERACTIONS WITH MHC CLASS II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 12143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6100 - 6.0900 1.00 3168 167 0.1908 0.2546 REMARK 3 2 6.0900 - 4.8400 1.00 3021 159 0.2982 0.3066 REMARK 3 3 4.8400 - 4.2300 1.00 2981 157 0.3417 0.3972 REMARK 3 4 4.2300 - 3.8400 0.80 2364 126 0.5371 0.5670 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 50.598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 133.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 234.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4911 REMARK 3 ANGLE : 0.533 6715 REMARK 3 CHIRALITY : 0.044 748 REMARK 3 PLANARITY : 0.004 876 REMARK 3 DIHEDRAL : 10.719 1808 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -2.2283 -73.0050 5.1377 REMARK 3 T TENSOR REMARK 3 T11: 1.6623 T22: 1.1485 REMARK 3 T33: 1.5264 T12: -0.0581 REMARK 3 T13: 0.0698 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 2.7516 L22: 1.8176 REMARK 3 L33: 1.8980 L12: 0.0953 REMARK 3 L13: -1.2354 L23: 0.5462 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.3397 S13: -0.2704 REMARK 3 S21: -0.4226 S22: 0.1289 S23: -0.2850 REMARK 3 S31: 0.2061 S32: -0.2163 S33: -0.1434 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000283711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12347 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.840 REMARK 200 RESOLUTION RANGE LOW (A) : 38.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.19900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M AMMONIUM SULFATE, 0.1 M TRIS REMARK 280 8.0 AND 15 % W/V PEG 4000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.70467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.35233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.02850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.67617 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.38083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.70467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 41.35233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 20.67617 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 62.02850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 103.38083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, A, P, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER L 23 REMARK 465 GLY L 24 REMARK 465 PRO L 25 REMARK 465 GLY L 26 REMARK 465 ALA L 77 REMARK 465 LEU L 78 REMARK 465 ASP L 79 REMARK 465 LEU L 80 REMARK 465 HIS L 81 REMARK 465 GLN L 82 REMARK 465 GLY L 83 REMARK 465 MET L 84 REMARK 465 PRO L 85 REMARK 465 SER L 86 REMARK 465 PRO L 87 REMARK 465 ARG L 88 REMARK 465 GLN L 89 REMARK 465 PRO L 90 REMARK 465 ALA L 91 REMARK 465 PRO L 92 REMARK 465 GLY L 255 REMARK 465 ILE A 209 REMARK 465 PRO A 210 REMARK 465 ALA A 211 REMARK 465 PRO A 212 REMARK 465 MET A 213 REMARK 465 SER A 214 REMARK 465 GLU A 215 REMARK 465 LEU A 216 REMARK 465 THR A 217 REMARK 465 GLU A 218 REMARK 465 GLY B 28 REMARK 465 ASP B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 36 CG CD OE1 OE2 REMARK 470 LYS L 47 CG CD CE NZ REMARK 470 LEU L 51 CG CD1 CD2 REMARK 470 PHE L 55 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG L 58 CG CD NE CZ NH1 NH2 REMARK 470 ASP L 68 CG OD1 OD2 REMARK 470 GLN L 71 CG CD OE1 NE2 REMARK 470 PRO L 72 CG CD REMARK 470 THR L 73 OG1 CG2 REMARK 470 PRO L 74 CG CD REMARK 470 ILE L 75 CG1 CG2 CD1 REMARK 470 PRO L 76 CG CD REMARK 470 ARG L 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 189 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 212 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 252 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 VAL P 88 CG1 CG2 REMARK 470 SER P 89 OG REMARK 470 LYS P 90 CG CD CE NZ REMARK 470 ARG P 92 CG CD NE CZ NH1 NH2 REMARK 470 MET P 93 CG SD CE REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 120 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 121 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 137 CG CD1 CD2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 MET B 191 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 48 OG SER A 163 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO L 76 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS L 44 101.01 -165.76 REMARK 500 LYS L 47 -131.26 47.45 REMARK 500 SER L 48 56.43 -151.49 REMARK 500 SER L 107 111.37 -163.72 REMARK 500 GLU L 120 -46.18 63.65 REMARK 500 ASN L 151 -76.83 -109.04 REMARK 500 LEU L 158 -167.47 -163.60 REMARK 500 GLU L 217 -118.03 58.34 REMARK 500 THR L 218 53.66 -113.58 REMARK 500 ASN A 105 -110.26 54.99 REMARK 500 ALA A 156 60.01 -152.16 REMARK 500 TYR A 170 7.32 59.92 REMARK 500 ASN B 46 -163.47 -126.62 REMARK 500 THR B 134 -74.04 -125.22 REMARK 500 GLU B 135 -135.82 56.20 REMARK 500 LEU B 137 -12.53 68.24 REMARK 500 TRP B 181 -15.75 73.58 REMARK 500 PRO B 193 173.10 -54.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 9CYM L 23 255 UNP Q61790 LAG3_MOUSE 23 255 DBREF 9CYM A 24 218 UNP P14434 HA2B_MOUSE 24 218 DBREF 9CYM P 87 101 UNP P04233 HG2A_HUMAN 103 117 DBREF 9CYM B 28 218 UNP P14483 HB2A_MOUSE 28 218 SEQADV 9CYM GLY P 86 UNP P04233 EXPRESSION TAG SEQRES 1 L 233 SER GLY PRO GLY LYS GLU LEU PRO VAL VAL TRP ALA GLN SEQRES 2 L 233 GLU GLY ALA PRO VAL HIS LEU PRO CYS SER LEU LYS SER SEQRES 3 L 233 PRO ASN LEU ASP PRO ASN PHE LEU ARG ARG GLY GLY VAL SEQRES 4 L 233 ILE TRP GLN HIS GLN PRO ASP SER GLY GLN PRO THR PRO SEQRES 5 L 233 ILE PRO ALA LEU ASP LEU HIS GLN GLY MET PRO SER PRO SEQRES 6 L 233 ARG GLN PRO ALA PRO GLY ARG TYR THR VAL LEU SER VAL SEQRES 7 L 233 ALA PRO GLY GLY LEU ARG SER GLY ARG GLN PRO LEU HIS SEQRES 8 L 233 PRO HIS VAL GLN LEU GLU GLU ARG GLY LEU GLN ARG GLY SEQRES 9 L 233 ASP PHE SER LEU TRP LEU ARG PRO ALA LEU ARG THR ASP SEQRES 10 L 233 ALA GLY GLU TYR HIS ALA THR VAL ARG LEU PRO ASN ARG SEQRES 11 L 233 ALA LEU SER CYS SER LEU ARG LEU ARG VAL GLY GLN ALA SEQRES 12 L 233 SER MET ILE ALA SER PRO SER GLY VAL LEU LYS LEU SER SEQRES 13 L 233 ASP TRP VAL LEU LEU ASN CYS SER PHE SER ARG PRO ASP SEQRES 14 L 233 ARG PRO VAL SER VAL HIS TRP PHE GLN GLY GLN ASN ARG SEQRES 15 L 233 VAL PRO VAL TYR ASN SER PRO ARG HIS PHE LEU ALA GLU SEQRES 16 L 233 THR PHE LEU LEU LEU PRO GLN VAL SER PRO LEU ASP SER SEQRES 17 L 233 GLY THR TRP GLY CYS VAL LEU THR TYR ARG ASP GLY PHE SEQRES 18 L 233 ASN VAL SER ILE THR TYR ASN LEU LYS VAL LEU GLY SEQRES 1 A 195 GLU ASP ASP ILE GLU ALA ASP HIS VAL GLY THR TYR GLY SEQRES 2 A 195 ILE SER VAL TYR GLN SER PRO GLY ASP ILE GLY GLN TYR SEQRES 3 A 195 THR PHE GLU PHE ASP GLY ASP GLU LEU PHE TYR VAL ASP SEQRES 4 A 195 LEU ASP LYS LYS GLU THR VAL TRP MET LEU PRO GLU PHE SEQRES 5 A 195 GLY GLN LEU ALA SER PHE ASP PRO GLN GLY GLY LEU GLN SEQRES 6 A 195 ASN ILE ALA VAL VAL LYS HIS ASN LEU GLY VAL LEU THR SEQRES 7 A 195 LYS ARG SER ASN SER THR PRO ALA THR ASN GLU ALA PRO SEQRES 8 A 195 GLN ALA THR VAL PHE PRO LYS SER PRO VAL LEU LEU GLY SEQRES 9 A 195 GLN PRO ASN THR LEU ILE CYS PHE VAL ASP ASN ILE PHE SEQRES 10 A 195 PRO PRO VAL ILE ASN ILE THR TRP LEU ARG ASN SER LYS SEQRES 11 A 195 SER VAL ALA ASP GLY VAL TYR GLU THR SER PHE PHE VAL SEQRES 12 A 195 ASN ARG ASP TYR SER PHE HIS LYS LEU SER TYR LEU THR SEQRES 13 A 195 PHE ILE PRO SER ASP ASP ASP ILE TYR ASP CYS LYS VAL SEQRES 14 A 195 GLU HIS TRP GLY LEU GLU GLU PRO VAL LEU LYS HIS TRP SEQRES 15 A 195 GLU PRO GLU ILE PRO ALA PRO MET SER GLU LEU THR GLU SEQRES 1 P 16 GLY PRO VAL SER LYS MET ARG MET ALA THR PRO LEU LEU SEQRES 2 P 16 MET GLN ALA SEQRES 1 B 191 GLY ASP SER GLU ARG HIS PHE VAL TYR GLN PHE MET GLY SEQRES 2 B 191 GLU CYS TYR PHE THR ASN GLY THR GLN ARG ILE ARG TYR SEQRES 3 B 191 VAL THR ARG TYR ILE TYR ASN ARG GLU GLU TYR VAL ARG SEQRES 4 B 191 TYR ASP SER ASP VAL GLY GLU HIS ARG ALA VAL THR GLU SEQRES 5 B 191 LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN PRO SEQRES 6 B 191 GLU ILE LEU GLU ARG THR ARG ALA GLU LEU ASP THR VAL SEQRES 7 B 191 CYS ARG HIS ASN TYR GLU GLY PRO GLU THR HIS THR SER SEQRES 8 B 191 LEU ARG ARG LEU GLU GLN PRO ASN VAL VAL ILE SER LEU SEQRES 9 B 191 SER ARG THR GLU ALA LEU ASN HIS HIS ASN THR LEU VAL SEQRES 10 B 191 CYS SER VAL THR ASP PHE TYR PRO ALA LYS ILE LYS VAL SEQRES 11 B 191 ARG TRP PHE ARG ASN GLY GLN GLU GLU THR VAL GLY VAL SEQRES 12 B 191 SER SER THR GLN LEU ILE ARG ASN GLY ASP TRP THR PHE SEQRES 13 B 191 GLN VAL LEU VAL MET LEU GLU MET THR PRO ARG ARG GLY SEQRES 14 B 191 GLU VAL TYR THR CYS HIS VAL GLU HIS PRO SER LEU LYS SEQRES 15 B 191 SER PRO ILE THR VAL GLU TRP ARG ALA HET NAG L 301 14 HET NAG L 302 14 HET NAG A 301 14 HET NAG B 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 4(C8 H15 N O6) HELIX 1 AA1 ASP L 52 ARG L 58 1 7 HELIX 2 AA2 ARG L 121 GLY L 126 5 6 HELIX 3 AA3 LEU L 136 ALA L 140 5 5 HELIX 4 AA4 SER L 226 SER L 230 5 5 HELIX 5 AA5 PRO A 73 LEU A 78 5 6 HELIX 6 AA6 ASP A 82 ASN A 105 1 24 HELIX 7 AA7 THR B 78 LEU B 80 5 3 HELIX 8 AA8 GLY B 81 SER B 90 1 10 HELIX 9 AA9 GLN B 91 VAL B 105 1 15 HELIX 10 AB1 VAL B 105 GLY B 112 1 8 HELIX 11 AB2 GLY B 112 SER B 118 1 7 SHEET 1 AA1 6 VAL L 31 GLN L 35 0 SHEET 2 AA1 6 SER L 157 GLY L 163 1 O GLY L 163 N ALA L 34 SHEET 3 AA1 6 GLY L 141 ARG L 148 -1 N GLY L 141 O LEU L 160 SHEET 4 AA1 6 GLY L 60 GLN L 66 -1 N GLN L 66 O GLU L 142 SHEET 5 AA1 6 TYR L 95 VAL L 100 -1 O TYR L 95 N HIS L 65 SHEET 6 AA1 6 ARG L 106 GLY L 108 -1 O SER L 107 N SER L 99 SHEET 1 AA2 4 VAL L 31 GLN L 35 0 SHEET 2 AA2 4 SER L 157 GLY L 163 1 O GLY L 163 N ALA L 34 SHEET 3 AA2 4 GLY L 141 ARG L 148 -1 N GLY L 141 O LEU L 160 SHEET 4 AA2 4 ALA L 153 LEU L 154 -1 O LEU L 154 N VAL L 147 SHEET 1 AA3 2 HIS L 41 LEU L 42 0 SHEET 2 AA3 2 LEU L 130 TRP L 131 -1 O LEU L 130 N LEU L 42 SHEET 1 AA4 4 SER L 166 ALA L 169 0 SHEET 2 AA4 4 LEU L 182 SER L 186 -1 O ASN L 184 N ILE L 168 SHEET 3 AA4 4 PHE L 219 LEU L 221 -1 O LEU L 220 N LEU L 183 SHEET 4 AA4 4 PHE L 214 LEU L 215 -1 N PHE L 214 O LEU L 221 SHEET 1 AA5 4 VAL L 205 VAL L 207 0 SHEET 2 AA5 4 VAL L 196 GLN L 200 -1 N GLN L 200 O VAL L 205 SHEET 3 AA5 4 GLY L 231 LEU L 237 -1 O VAL L 236 N HIS L 197 SHEET 4 AA5 4 VAL L 245 LEU L 251 -1 O TYR L 249 N TRP L 233 SHEET 1 AA6 6 HIS A 31 GLY A 33 0 SHEET 2 AA6 6 PHE B 34 PHE B 44 -1 O PHE B 44 N HIS A 31 SHEET 3 AA6 6 ILE A 37 SER A 42 -1 N TYR A 40 O TYR B 36 SHEET 4 AA6 6 ILE A 46 PHE A 53 -1 O GLN A 48 N VAL A 39 SHEET 5 AA6 6 ASP A 56 VAL A 61 -1 O VAL A 61 N TYR A 49 SHEET 6 AA6 6 THR A 68 TRP A 70 -1 O VAL A 69 N TYR A 60 SHEET 1 AA7 5 HIS A 31 GLY A 33 0 SHEET 2 AA7 5 PHE B 34 PHE B 44 -1 O PHE B 44 N HIS A 31 SHEET 3 AA7 5 ILE B 51 TYR B 59 -1 O ILE B 58 N GLN B 37 SHEET 4 AA7 5 GLU B 63 ASP B 68 -1 O TYR B 67 N THR B 55 SHEET 5 AA7 5 HIS B 74 ARG B 75 -1 O ARG B 75 N ARG B 66 SHEET 1 AA8 4 GLN A 115 PRO A 120 0 SHEET 2 AA8 4 ASN A 130 ILE A 139 -1 O ASP A 137 N GLN A 115 SHEET 3 AA8 4 PHE A 172 PHE A 180 -1 O LEU A 178 N LEU A 132 SHEET 4 AA8 4 VAL A 159 GLU A 161 -1 N TYR A 160 O TYR A 177 SHEET 1 AA9 4 GLN A 115 PRO A 120 0 SHEET 2 AA9 4 ASN A 130 ILE A 139 -1 O ASP A 137 N GLN A 115 SHEET 3 AA9 4 PHE A 172 PHE A 180 -1 O LEU A 178 N LEU A 132 SHEET 4 AA9 4 PHE A 165 VAL A 166 -1 N PHE A 165 O HIS A 173 SHEET 1 AB1 4 LYS A 153 SER A 154 0 SHEET 2 AB1 4 ILE A 144 ARG A 150 -1 N ARG A 150 O LYS A 153 SHEET 3 AB1 4 TYR A 188 HIS A 194 -1 O GLU A 193 N ASN A 145 SHEET 4 AB1 4 VAL A 201 TRP A 205 -1 O VAL A 201 N VAL A 192 SHEET 1 AB2 4 ASN B 126 LEU B 131 0 SHEET 2 AB2 4 THR B 142 PHE B 150 -1 O THR B 148 N ASN B 126 SHEET 3 AB2 4 PHE B 183 GLU B 190 -1 O LEU B 189 N LEU B 143 SHEET 4 AB2 4 VAL B 170 SER B 172 -1 N SER B 171 O MET B 188 SHEET 1 AB3 4 ASN B 126 LEU B 131 0 SHEET 2 AB3 4 THR B 142 PHE B 150 -1 O THR B 148 N ASN B 126 SHEET 3 AB3 4 PHE B 183 GLU B 190 -1 O LEU B 189 N LEU B 143 SHEET 4 AB3 4 ILE B 176 ARG B 177 -1 N ILE B 176 O GLN B 184 SHEET 1 AB4 4 GLN B 164 GLU B 166 0 SHEET 2 AB4 4 LYS B 156 ARG B 161 -1 N ARG B 161 O GLN B 164 SHEET 3 AB4 4 TYR B 199 GLU B 204 -1 O HIS B 202 N ARG B 158 SHEET 4 AB4 4 THR B 213 TRP B 216 -1 O TRP B 216 N TYR B 199 SSBOND 1 CYS L 44 CYS L 156 1555 1555 2.03 SSBOND 2 CYS L 185 CYS L 235 1555 1555 2.03 SSBOND 3 CYS A 134 CYS A 190 1555 1555 2.03 SSBOND 4 CYS B 42 CYS B 106 1555 1555 2.03 SSBOND 5 CYS B 145 CYS B 201 1555 1555 2.03 LINK ND2 ASN L 184 C1 NAG L 302 1555 1555 1.45 LINK ND2 ASN L 244 C1 NAG L 301 1555 1555 1.46 LINK ND2 ASN A 145 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN B 46 C1 NAG B 301 1555 1555 1.44 CISPEP 1 SER A 42 PRO A 43 0 0.77 CISPEP 2 PHE A 140 PRO A 141 0 0.53 CRYST1 187.652 187.652 124.057 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005329 0.003077 0.000000 0.00000 SCALE2 0.000000 0.006153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008061 0.00000