HEADER TOXIN 02-AUG-24 9CYS TITLE TOXIN/IMMUNITY COMPLEX FOR A T6SS LIPASE EFFECTOR FROM E. CLOACAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: I; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T6SS LIPASE EFFECTOR; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: UNP RESIDUES 172-472; COMPND 9 SYNONYM: TLE; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 8 ORGANISM_TAXID: 550; SOURCE 9 GENE: NCTC10005_04014; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPASE, TOXIN, IMMUNITY, METHYLGLYOXAL, TOXIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.J.CUTHBERT,S.J.JENSEN,C.W.GOULDING,C.S.HAYES REVDAT 1 14-AUG-24 9CYS 0 JRNL AUTH S.J.JENSEN,B.J.CUTHBERT,F.GARZA-SANCHEZ,C.C.HELOU, JRNL AUTH 2 R.DE MIRANDA,C.W.GOULDING,C.S.HAYES JRNL TITL ADVANCED GLYCATION END-PRODUCT (AGE) CROSSLINKING ACTIVATES JRNL TITL 2 A TYPE 6 SECRETION SYSTEM PHOSPHOLIPASE EFFECTOR PROTEIN JRNL REF NATURE COMMUNICATIONS 2024 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 66399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9200 - 5.4300 0.99 2130 241 0.1638 0.1796 REMARK 3 2 5.4200 - 4.3100 1.00 2063 229 0.1466 0.1744 REMARK 3 3 4.3100 - 3.7600 0.98 2027 226 0.1421 0.1700 REMARK 3 4 3.7600 - 3.4200 1.00 2029 219 0.1609 0.1916 REMARK 3 5 3.4200 - 3.1800 1.00 2032 224 0.1721 0.1985 REMARK 3 6 3.1800 - 2.9900 1.00 2016 225 0.1848 0.2073 REMARK 3 7 2.9900 - 2.8400 0.98 1995 227 0.1884 0.2020 REMARK 3 8 2.8400 - 2.7200 1.00 2019 207 0.1949 0.2209 REMARK 3 9 2.7200 - 2.6100 1.00 1999 233 0.1933 0.2319 REMARK 3 10 2.6100 - 2.5200 1.00 1984 227 0.1946 0.2274 REMARK 3 11 2.5200 - 2.4400 1.00 2024 212 0.1928 0.2259 REMARK 3 12 2.4400 - 2.3700 0.99 1983 234 0.1894 0.2121 REMARK 3 13 2.3700 - 2.3100 1.00 2011 221 0.2068 0.2449 REMARK 3 14 2.3100 - 2.2500 0.99 1995 213 0.1944 0.2417 REMARK 3 15 2.2500 - 2.2000 0.97 1958 210 0.2055 0.2491 REMARK 3 16 2.2000 - 2.1600 0.99 1982 231 0.2125 0.2396 REMARK 3 17 2.1600 - 2.1100 1.00 1994 218 0.2096 0.2511 REMARK 3 18 2.1100 - 2.0700 0.99 1965 217 0.2220 0.2596 REMARK 3 19 2.0700 - 2.0400 0.99 1976 228 0.2273 0.2532 REMARK 3 20 2.0400 - 2.0000 0.99 1998 223 0.2113 0.2509 REMARK 3 21 2.0000 - 1.9700 0.99 1982 224 0.2178 0.2680 REMARK 3 22 1.9700 - 1.9400 0.99 1968 223 0.2255 0.2481 REMARK 3 23 1.9400 - 1.9100 0.99 1945 223 0.2412 0.2819 REMARK 3 24 1.9100 - 1.8800 0.99 1983 208 0.2539 0.2681 REMARK 3 25 1.8800 - 1.8600 0.99 2026 206 0.2670 0.3148 REMARK 3 26 1.8600 - 1.8300 0.97 1909 224 0.2889 0.3059 REMARK 3 27 1.8300 - 1.8100 0.99 1945 238 0.2967 0.3490 REMARK 3 28 1.8100 - 1.7900 0.99 1987 202 0.3191 0.3769 REMARK 3 29 1.7900 - 1.7700 0.99 1920 230 0.3491 0.3285 REMARK 3 30 1.7700 - 1.7500 0.95 1910 201 0.4043 0.4803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000286980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 38.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.80600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M SODIUM CITRATE, 22% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.54050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.86950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.66850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.54050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.86950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.66850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.54050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.86950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.66850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.54050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.86950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.66850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET I 1 REMARK 465 MET A 160 REMARK 465 ALA A 161 REMARK 465 LYS A 162 REMARK 465 SER A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 GLN A 399 REMARK 465 GLU A 400 REMARK 465 VAL A 401 REMARK 465 ASN A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 404 REMARK 465 GLU A 405 REMARK 465 ASP A 406 REMARK 465 TYR A 407 REMARK 465 LYS A 408 REMARK 465 MET A 409 REMARK 465 LEU A 410 REMARK 465 LYS A 411 REMARK 465 GLY A 412 REMARK 465 HIS A 413 REMARK 465 ILE A 414 REMARK 465 PRO A 415 REMARK 465 THR A 416 REMARK 465 LEU A 417 REMARK 465 ILE A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 465 GLU A 421 REMARK 465 GLU A 422 REMARK 465 ILE A 423 REMARK 465 SER A 424 REMARK 465 ALA A 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP I 2 CG OD1 OD2 REMARK 470 LYS I 4 CG CD CE NZ REMARK 470 LYS I 230 CG CD CE NZ REMARK 470 HIS A 169 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 263 CG OD1 OD2 REMARK 470 ARG A 290 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 294 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 295 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 309 CG CD OE1 NE2 REMARK 470 SER A 315 OG REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 ASN A 429 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 180 C12 MIE A 505 1.32 REMARK 500 NH2 ARG A 180 C13 MIE A 505 1.32 REMARK 500 NZ LYS A 461 C13 MIE A 505 1.44 REMARK 500 O1 GOL A 504 O HOH A 601 2.05 REMARK 500 O HOH I 391 O HOH I 526 2.12 REMARK 500 OD1 ASP A 257 O HOH A 602 2.13 REMARK 500 CZ ARG A 180 C12 MIE A 505 2.14 REMARK 500 CZ ARG A 180 C13 MIE A 505 2.15 REMARK 500 O HOH I 542 O HOH I 550 2.18 REMARK 500 NH2 ARG A 180 C12 MIE A 505 2.18 REMARK 500 NH1 ARG A 180 C13 MIE A 505 2.19 REMARK 500 OE2 GLU I 174 O HOH I 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 180 NE ARG A 180 CZ 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 180 NH1 - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 180 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN I 57 -127.38 60.80 REMARK 500 VAL A 222 -78.90 -107.64 REMARK 500 ASP A 316 99.25 -164.14 REMARK 500 SER A 341 -131.10 63.91 REMARK 500 SER A 341 -130.99 63.91 REMARK 500 GLU A 381 -129.29 59.49 REMARK 500 ALA A 382 -9.14 71.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 180 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MIE A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7UBZ RELATED DB: PDB REMARK 900 CHYMOTRYPSIN DIGESTED COMPLEX REMARK 900 RELATED ID: 7UC1 RELATED DB: PDB REMARK 900 TLE (S289A)/TLI COMPLEX DBREF1 9CYS I 1 230 UNP A0A0H3CKN4_ENTCC DBREF2 9CYS I A0A0H3CKN4 24 253 DBREF1 9CYS A 172 472 UNP A0A0M7ENE2_ENTCL DBREF2 9CYS A A0A0M7ENE2 172 472 SEQADV 9CYS MET A 160 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS ALA A 161 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS LYS A 162 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS SER A 163 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS HIS A 164 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS HIS A 165 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS HIS A 166 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS HIS A 167 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS HIS A 168 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS HIS A 169 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS THR A 170 UNP A0A0M7ENE EXPRESSION TAG SEQADV 9CYS SER A 171 UNP A0A0M7ENE EXPRESSION TAG SEQRES 1 I 230 MET ASP LEU LYS PRO ASP ASN TYR PHE SER GLY GLN GLN SEQRES 2 I 230 LEU THR LEU ALA ARG ALA ILE GLU ASN GLY GLU VAL ASP SEQRES 3 I 230 GLU VAL ILE LYS LEU ALA SER GLY THR ASP LEU ASN LYS SEQRES 4 I 230 PRO GLY LYS GLU ASP MET THR LEU LEU PHE TRP ALA VAL SEQRES 5 I 230 MET ASN SER ILE ASN ASN GLN LYS THR PRO GLU ARG LEU SEQRES 6 I 230 ASN VAL ILE THR MET LEU ILE LYS ALA GLY ALA ASP PRO SEQRES 7 I 230 LEU GLN PRO ARG PRO GLN GLY LYS ASN SER PRO ALA GLU SEQRES 8 I 230 PHE VAL LEU MET ALA ASP ASN ALA ASP TRP ILE LYS ALA SEQRES 9 I 230 MET LEU ASN ALA GLY LEU SER PRO ASN ALA VAL ASP LYS SEQRES 10 I 230 THR PHE GLY LYS PRO ILE ILE PHE GLN THR LEU GLU ALA SEQRES 11 I 230 LYS ASN THR LYS THR LEU GLN ALA MET LEU ASP LYS GLY SEQRES 12 I 230 ALA ASP ILE ASN ILE THR ASP SER LEU GLY ASN THR LEU SEQRES 13 I 230 LEU ILE ASP ALA LEU ASP PHE HIS SER TYR ASP HIS VAL SEQRES 14 I 230 LEU LEU LEU LEU GLU ARG GLY ALA ASP PRO GLU ILE LYS SEQRES 15 I 230 ALA ASP ASN GLY TRP THR MET GLY ASN GLN LEU GLN ARG SEQRES 16 I 230 PHE LEU ASP ARG ALA LYS VAL GLY SER ASP GLU TYR LYS SEQRES 17 I 230 LYS LEU ASN GLU ILE LYS ASP VAL LEU ILE GLN HIS GLY SEQRES 18 I 230 GLY LYS TRP PRO PRO THR PRO VAL LYS SEQRES 1 A 313 MET ALA LYS SER HIS HIS HIS HIS HIS HIS THR SER THR SEQRES 2 A 313 LYS ALA GLU ARG TRP GLN ALA ARG LYS ASP LEU ILE ALA SEQRES 3 A 313 LYS GLY SER ASN SER LEU TYR PRO ASP ALA GLN ILE ALA SEQRES 4 A 313 ALA LYS ARG LEU ALA ALA ASN ASN ILE ALA VAL GLU LYS SEQRES 5 A 313 ALA LYS LEU ALA GLU ASN VAL TYR LYS THR VAL ASN PRO SEQRES 6 A 313 LEU GLU ALA THR PRO GLY VAL PRO GLU GLY TRP LYS ASP SEQRES 7 A 313 ILE SER ASN ASP ALA GLY ALA LEU LYS LYS TYR GLY LEU SEQRES 8 A 313 ASP LYS GLU VAL LEU PHE ASP HIS ALA ASP THR PRO ASP SEQRES 9 A 313 PHE LEU ALA ARG VAL TYR GLN PRO ASP SER ALA VAL PHE SEQRES 10 A 313 GLY SER ASP MET ASN PRO THR ILE VAL PHE ARG GLY SER SEQRES 11 A 313 ARG GLN PRO GLU PHE PHE PRO THR LYS ASN MET ALA ASP SEQRES 12 A 313 TRP ILE ASN ASN GLY ALA GLN GLY LEU GLY MET GLU SER SEQRES 13 A 313 ASP TYR TYR LYS ARG ALA VAL ARG LEU GLY SER ARG LEU SEQRES 14 A 313 ALA LYS SER VAL SER LYS ILE ASP ILE ALA GLY HIS SER SEQRES 15 A 313 LEU GLY GLY GLY LEU ALA SER ALA THR SER ILE ALA SER SEQRES 16 A 313 GLY GLN ALA GLY TRP THR PHE ASN ALA ALA GLY LEU HIS SEQRES 17 A 313 SER THR THR VAL GLU LYS TYR GLY GLY SER LEU LEU GLY SEQRES 18 A 313 GLU ALA ASP ASN ILE GLN ALA TYR ARG VAL GLU GLY GLU SEQRES 19 A 313 LEU LEU THR LYS ILE GLN GLU VAL ASN LEU ALA GLU ASP SEQRES 20 A 313 TYR LYS MET LEU LYS GLY HIS ILE PRO THR LEU ILE ALA SEQRES 21 A 313 LYS GLU GLU ILE SER ALA ILE MET PRO ASN ALA ALA GLY SEQRES 22 A 313 VAL VAL HIS ASP LEU PRO GLY GLY THR GLY GLY PRO LEU SEQRES 23 A 313 ASP ARG HIS GLY ILE GLY GLN ALA ILE ASP CYS ILE GLU SEQRES 24 A 313 GLN GLN LYS ASP GLU ASP ILE SER ILE ILE ARG SER ARG SEQRES 25 A 313 ALA HET CIT A 501 13 HET GOL A 502 6 HET PGE A 503 10 HET GOL A 504 6 HET MIE A 505 3 HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM MIE METHYLGLYOXAL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CIT C6 H8 O7 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 PGE C6 H14 O4 FORMUL 7 MIE C3 H4 O2 FORMUL 8 HOH *471(H2 O) HELIX 1 AA1 LYS I 4 TYR I 8 5 5 HELIX 2 AA2 SER I 10 ASN I 22 1 13 HELIX 3 AA3 GLU I 24 SER I 33 1 10 HELIX 4 AA4 GLY I 41 MET I 45 5 5 HELIX 5 AA5 THR I 46 ASN I 54 1 9 HELIX 6 AA6 ILE I 56 LYS I 60 5 5 HELIX 7 AA7 THR I 61 ALA I 74 1 14 HELIX 8 AA8 ARG I 82 LYS I 86 5 5 HELIX 9 AA9 SER I 88 MET I 95 1 8 HELIX 10 AB1 ALA I 99 ASN I 107 1 9 HELIX 11 AB2 PRO I 122 ALA I 130 5 9 HELIX 12 AB3 THR I 133 LYS I 142 1 10 HELIX 13 AB4 THR I 155 PHE I 163 1 9 HELIX 14 AB5 SER I 165 ARG I 175 1 11 HELIX 15 AB6 THR I 188 ALA I 200 1 13 HELIX 16 AB7 SER I 204 HIS I 220 1 17 HELIX 17 AB8 THR A 172 ASN A 189 1 18 HELIX 18 AB9 TYR A 192 VAL A 218 1 27 HELIX 19 AC1 TYR A 219 THR A 221 5 3 HELIX 20 AC2 ASP A 241 LYS A 246 1 6 HELIX 21 AC3 LYS A 247 GLY A 249 5 3 HELIX 22 AC4 LYS A 252 PHE A 256 5 5 HELIX 23 AC5 ASP A 272 GLY A 277 1 6 HELIX 24 AC6 PHE A 294 LYS A 298 5 5 HELIX 25 AC7 ASP A 302 LEU A 311 1 10 HELIX 26 AC8 ASP A 316 ALA A 329 1 14 HELIX 27 AC9 SER A 341 GLY A 355 1 15 HELIX 28 AD1 HIS A 367 TYR A 374 1 8 HELIX 29 AD2 GLY A 375 LEU A 379 5 5 HELIX 30 AD3 GLU A 393 ILE A 398 1 6 HELIX 31 AD4 GLY A 443 GLY A 449 1 7 HELIX 32 AD5 GLY A 449 ARG A 471 1 23 SHEET 1 AA1 7 TRP A 235 ASP A 237 0 SHEET 2 AA1 7 LEU A 265 PRO A 271 -1 O GLN A 270 N LYS A 236 SHEET 3 AA1 7 THR A 283 ARG A 287 -1 O VAL A 285 N ARG A 267 SHEET 4 AA1 7 ASP A 336 HIS A 340 1 O ASP A 336 N ILE A 284 SHEET 5 AA1 7 GLY A 358 PHE A 361 1 O TRP A 359 N ILE A 337 SHEET 6 AA1 7 ILE A 385 VAL A 390 1 O GLN A 386 N GLY A 358 SHEET 7 AA1 7 VAL A 433 LEU A 437 1 O VAL A 433 N ILE A 385 CISPEP 1 TRP I 224 PRO I 225 0 2.70 CRYST1 99.081 111.739 119.337 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008380 0.00000