HEADER STRUCTURAL PROTEIN 05-AUG-24 9CZS TITLE STRUCTURE OF THE SELF-ASSOCIATION DOMAIN OF LDB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LDB-2,CARBOXYL-TERMINAL LIM DOMAIN-BINDING PROTEIN 1,CLIM-1, COMPND 5 LIM DOMAIN-BINDING FACTOR CLIM1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LDB2, CLIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIM DOMAIN BINDING, TRANSCRIPTIONAL FACTORS, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.VU,K.PATEL,N.C.SMITH,J.M.MATTHEWS REVDAT 1 13-AUG-25 9CZS 0 JRNL AUTH T.H.VU,K.PATEL,N.C.SMITH,J.M.MATTHEWS JRNL TITL STRUCTURE OF THE SELF-ASSOCIATION DOMAIN OF LDB2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1100 - 6.6100 1.00 1277 137 0.1716 0.2501 REMARK 3 2 6.6000 - 5.2400 1.00 1278 136 0.1926 0.3601 REMARK 3 3 5.2400 - 4.5800 1.00 1270 138 0.1600 0.2505 REMARK 3 4 4.5800 - 4.1600 1.00 1275 143 0.1787 0.2537 REMARK 3 5 4.1600 - 3.8600 1.00 1260 140 0.2100 0.2225 REMARK 3 6 3.8600 - 3.6300 1.00 1266 138 0.2585 0.3447 REMARK 3 7 3.6300 - 3.4500 1.00 1312 141 0.2498 0.3398 REMARK 3 8 3.4500 - 3.3000 1.00 1227 141 0.2887 0.3665 REMARK 3 9 3.3000 - 3.1700 0.94 1221 135 0.3184 0.3543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.478 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2803 REMARK 3 ANGLE : 1.300 3793 REMARK 3 CHIRALITY : 0.065 415 REMARK 3 PLANARITY : 0.015 483 REMARK 3 DIHEDRAL : 5.988 365 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7025 27.5774 15.3576 REMARK 3 T TENSOR REMARK 3 T11: 0.4821 T22: 0.3719 REMARK 3 T33: 0.4256 T12: -0.0590 REMARK 3 T13: -0.0572 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.1827 L22: 2.9439 REMARK 3 L33: 1.6556 L12: 0.4207 REMARK 3 L13: 0.7886 L23: 0.4104 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: 0.1692 S13: 0.1467 REMARK 3 S21: 0.1604 S22: 0.1570 S23: -0.2048 REMARK 3 S31: -0.1464 S32: 0.2236 S33: -0.0391 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5787 22.5044 19.3563 REMARK 3 T TENSOR REMARK 3 T11: 0.5468 T22: 0.4123 REMARK 3 T33: 0.4444 T12: -0.0553 REMARK 3 T13: -0.0524 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.8093 L22: 1.4958 REMARK 3 L33: 2.9870 L12: 0.0607 REMARK 3 L13: -0.0814 L23: 0.6310 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: 0.0349 S13: 0.0040 REMARK 3 S21: 0.4716 S22: -0.3321 S23: 0.0902 REMARK 3 S31: -0.3629 S32: -0.4165 S33: 0.1610 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4844 -0.9361 -3.8348 REMARK 3 T TENSOR REMARK 3 T11: 0.3806 T22: 0.4214 REMARK 3 T33: 0.6339 T12: 0.0416 REMARK 3 T13: 0.0109 T23: -0.1906 REMARK 3 L TENSOR REMARK 3 L11: 1.5276 L22: 1.0985 REMARK 3 L33: 2.6737 L12: 0.5911 REMARK 3 L13: -2.3888 L23: -1.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.6882 S12: 0.5005 S13: 0.1027 REMARK 3 S21: -0.2595 S22: 0.6791 S23: -0.7960 REMARK 3 S31: -0.0474 S32: -0.2837 S33: -0.1344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9617 23.0174 9.0861 REMARK 3 T TENSOR REMARK 3 T11: 0.6562 T22: 0.6897 REMARK 3 T33: 0.5758 T12: 0.0043 REMARK 3 T13: -0.0153 T23: -0.1333 REMARK 3 L TENSOR REMARK 3 L11: 5.7053 L22: 6.0576 REMARK 3 L33: 7.1380 L12: 1.4267 REMARK 3 L13: -1.9580 L23: -2.6574 REMARK 3 S TENSOR REMARK 3 S11: -0.1544 S12: -1.1712 S13: 0.4091 REMARK 3 S21: 0.9694 S22: -0.4825 S23: -0.3212 REMARK 3 S31: -2.4133 S32: 0.9497 S33: 0.4173 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5253 10.5532 2.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.3914 T22: 0.5523 REMARK 3 T33: 0.5193 T12: 0.1339 REMARK 3 T13: -0.0713 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.5852 L22: 1.7131 REMARK 3 L33: 2.8574 L12: 0.5927 REMARK 3 L13: -0.2762 L23: 0.5618 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.4606 S13: -0.0986 REMARK 3 S21: -0.1079 S22: -0.0269 S23: 0.1167 REMARK 3 S31: -0.2896 S32: -0.4976 S33: -0.0245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8118 17.0865 0.3188 REMARK 3 T TENSOR REMARK 3 T11: 0.6165 T22: 0.5055 REMARK 3 T33: 0.4890 T12: -0.1122 REMARK 3 T13: 0.0080 T23: -0.1223 REMARK 3 L TENSOR REMARK 3 L11: 1.8670 L22: 3.8813 REMARK 3 L33: 3.4727 L12: -2.0009 REMARK 3 L13: 1.2636 L23: -2.7357 REMARK 3 S TENSOR REMARK 3 S11: 0.4249 S12: 0.1522 S13: 0.0364 REMARK 3 S21: -0.3537 S22: -0.4467 S23: 0.3035 REMARK 3 S31: -0.2545 S32: 0.3018 S33: -0.1774 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1628 7.5513 7.9621 REMARK 3 T TENSOR REMARK 3 T11: 0.3975 T22: 0.4984 REMARK 3 T33: 0.4524 T12: 0.0340 REMARK 3 T13: 0.0460 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 0.8476 L22: 0.4140 REMARK 3 L33: 1.5210 L12: -0.2280 REMARK 3 L13: 0.8236 L23: -0.5061 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: -0.0613 S13: 0.0621 REMARK 3 S21: 0.0101 S22: -0.0169 S23: 0.0716 REMARK 3 S31: 0.0012 S32: -0.2100 S33: -0.1172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 27 through 192) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 27 through 110 or REMARK 3 resid 114 through 192)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000285366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95374 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12703 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.170 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, HEPES, PEG 8000, REMARK 280 MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.59800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.81700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.59800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.81700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 TYR A 24 REMARK 465 MET A 25 REMARK 465 VAL A 26 REMARK 465 TYR A 111 REMARK 465 HIS A 112 REMARK 465 ASN A 113 REMARK 465 GLY A 195 REMARK 465 LEU A 196 REMARK 465 THR A 197 REMARK 465 ASN A 198 REMARK 465 PHE A 199 REMARK 465 THR A 200 REMARK 465 LEU A 201 REMARK 465 ASN A 202 REMARK 465 TYR A 203 REMARK 465 LEU A 204 REMARK 465 ARG A 205 REMARK 465 THR B 22 REMARK 465 PRO B 23 REMARK 465 TYR B 24 REMARK 465 MET B 25 REMARK 465 VAL B 26 REMARK 465 ARG B 193 REMARK 465 MET B 194 REMARK 465 GLY B 195 REMARK 465 LEU B 196 REMARK 465 THR B 197 REMARK 465 ASN B 198 REMARK 465 PHE B 199 REMARK 465 THR B 200 REMARK 465 LEU B 201 REMARK 465 ASN B 202 REMARK 465 TYR B 203 REMARK 465 LEU B 204 REMARK 465 ARG B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 MET A 194 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 43 OD1 ASP B 45 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 142 OD2 ASP B 121 1556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 46 92.05 3.22 REMARK 500 ASP A 61 -7.91 -57.70 REMARK 500 ASP A 62 -83.64 -99.76 REMARK 500 ALA A 63 153.43 52.13 REMARK 500 ASP A 73 0.04 -59.69 REMARK 500 GLN A 122 69.16 -119.02 REMARK 500 PHE A 149 37.32 -83.29 REMARK 500 MET A 153 65.92 60.32 REMARK 500 ARG A 171 114.16 70.36 REMARK 500 ARG A 193 62.63 -100.37 REMARK 500 GLU B 72 -71.63 -48.53 REMARK 500 ASP B 73 -2.98 -57.54 REMARK 500 ARG B 171 118.86 71.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 142 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9BPO RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT CRYSTALLISATION CONDITIONS DBREF 9CZS A 22 205 UNP O55203 LDB2_MOUSE 22 205 DBREF 9CZS B 22 205 UNP O55203 LDB2_MOUSE 22 205 SEQRES 1 A 184 THR PRO TYR MET VAL GLN PRO GLU TYR ARG ILE TYR GLU SEQRES 2 A 184 MET ASN LYS ARG LEU GLN SER ARG THR GLU ASP SER ASP SEQRES 3 A 184 ASN LEU TRP TRP ASP ALA PHE ALA THR GLU PHE PHE GLU SEQRES 4 A 184 ASP ASP ALA THR LEU THR LEU SER PHE CYS LEU GLU ASP SEQRES 5 A 184 GLY PRO LYS ARG TYR THR ILE GLY ARG THR LEU ILE PRO SEQRES 6 A 184 ARG TYR PHE SER THR VAL PHE GLU GLY GLY VAL THR ASP SEQRES 7 A 184 LEU TYR TYR ILE LEU LYS HIS SER LYS GLU SER TYR HIS SEQRES 8 A 184 ASN SER SER ILE THR VAL ASP CYS ASP GLN CYS ALA MET SEQRES 9 A 184 VAL THR GLN HIS GLY LYS PRO MET PHE THR LYS VAL CYS SEQRES 10 A 184 THR GLU GLY ARG LEU ILE LEU GLU PHE THR PHE ASP ASP SEQRES 11 A 184 LEU MET ARG ILE LYS THR TRP HIS PHE THR ILE ARG GLN SEQRES 12 A 184 TYR ARG GLU LEU VAL PRO ARG SER ILE LEU ALA MET HIS SEQRES 13 A 184 ALA GLN ASP PRO GLN VAL LEU ASP GLN LEU SER LYS ASN SEQRES 14 A 184 ILE THR ARG MET GLY LEU THR ASN PHE THR LEU ASN TYR SEQRES 15 A 184 LEU ARG SEQRES 1 B 184 THR PRO TYR MET VAL GLN PRO GLU TYR ARG ILE TYR GLU SEQRES 2 B 184 MET ASN LYS ARG LEU GLN SER ARG THR GLU ASP SER ASP SEQRES 3 B 184 ASN LEU TRP TRP ASP ALA PHE ALA THR GLU PHE PHE GLU SEQRES 4 B 184 ASP ASP ALA THR LEU THR LEU SER PHE CYS LEU GLU ASP SEQRES 5 B 184 GLY PRO LYS ARG TYR THR ILE GLY ARG THR LEU ILE PRO SEQRES 6 B 184 ARG TYR PHE SER THR VAL PHE GLU GLY GLY VAL THR ASP SEQRES 7 B 184 LEU TYR TYR ILE LEU LYS HIS SER LYS GLU SER TYR HIS SEQRES 8 B 184 ASN SER SER ILE THR VAL ASP CYS ASP GLN CYS ALA MET SEQRES 9 B 184 VAL THR GLN HIS GLY LYS PRO MET PHE THR LYS VAL CYS SEQRES 10 B 184 THR GLU GLY ARG LEU ILE LEU GLU PHE THR PHE ASP ASP SEQRES 11 B 184 LEU MET ARG ILE LYS THR TRP HIS PHE THR ILE ARG GLN SEQRES 12 B 184 TYR ARG GLU LEU VAL PRO ARG SER ILE LEU ALA MET HIS SEQRES 13 B 184 ALA GLN ASP PRO GLN VAL LEU ASP GLN LEU SER LYS ASN SEQRES 14 B 184 ILE THR ARG MET GLY LEU THR ASN PHE THR LEU ASN TYR SEQRES 15 B 184 LEU ARG HELIX 1 AA1 GLN A 27 GLN A 40 1 14 HELIX 2 AA2 ASP A 47 PHE A 58 1 12 HELIX 3 AA3 LEU A 84 PHE A 93 1 10 HELIX 4 AA4 LEU A 174 GLN A 179 5 6 HELIX 5 AA5 ASP A 180 ARG A 193 1 14 HELIX 6 AA6 PRO B 28 GLN B 40 1 13 HELIX 7 AA7 ASP B 47 PHE B 58 1 12 HELIX 8 AA8 LEU B 84 PHE B 93 1 10 HELIX 9 AA9 LEU B 174 GLN B 179 5 6 HELIX 10 AB1 ASP B 180 THR B 192 1 13 SHEET 1 AA1 6 GLY A 74 GLY A 81 0 SHEET 2 AA1 6 PHE A 59 LEU A 71 -1 N PHE A 69 O LYS A 76 SHEET 3 AA1 6 ILE A 155 LEU A 168 1 O TRP A 158 N THR A 64 SHEET 4 AA1 6 LYS A 136 PHE A 147 -1 N ILE A 144 O HIS A 159 SHEET 5 AA1 6 ILE A 116 GLN A 128 -1 N CYS A 123 O GLY A 141 SHEET 6 AA1 6 ASP A 99 LYS A 105 -1 N TYR A 101 O VAL A 126 SHEET 1 AA2 6 GLY A 74 GLY A 81 0 SHEET 2 AA2 6 PHE A 59 LEU A 71 -1 N PHE A 69 O LYS A 76 SHEET 3 AA2 6 ILE A 155 LEU A 168 1 O TRP A 158 N THR A 64 SHEET 4 AA2 6 LYS A 136 PHE A 147 -1 N ILE A 144 O HIS A 159 SHEET 5 AA2 6 ILE A 116 GLN A 128 -1 N CYS A 123 O GLY A 141 SHEET 6 AA2 6 LYS A 108 SER A 110 -1 N LYS A 108 O ASP A 119 SHEET 1 AA3 6 GLY B 74 GLY B 81 0 SHEET 2 AA3 6 PHE B 59 LEU B 71 -1 N PHE B 69 O LYS B 76 SHEET 3 AA3 6 ILE B 155 LEU B 168 1 O TRP B 158 N THR B 66 SHEET 4 AA3 6 LYS B 136 PHE B 147 -1 N GLU B 146 O LYS B 156 SHEET 5 AA3 6 ILE B 116 GLN B 128 -1 N ILE B 116 O PHE B 147 SHEET 6 AA3 6 ASP B 99 LYS B 105 -1 N TYR B 101 O VAL B 126 SHEET 1 AA4 6 GLY B 74 GLY B 81 0 SHEET 2 AA4 6 PHE B 59 LEU B 71 -1 N PHE B 69 O LYS B 76 SHEET 3 AA4 6 ILE B 155 LEU B 168 1 O TRP B 158 N THR B 66 SHEET 4 AA4 6 LYS B 136 PHE B 147 -1 N GLU B 146 O LYS B 156 SHEET 5 AA4 6 ILE B 116 GLN B 128 -1 N ILE B 116 O PHE B 147 SHEET 6 AA4 6 LYS B 108 TYR B 111 -1 N SER B 110 O THR B 117 CISPEP 1 LYS A 131 PRO A 132 0 1.74 CISPEP 2 LYS B 131 PRO B 132 0 2.69 CRYST1 61.196 147.634 42.994 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016341 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023259 0.00000 MTRIX1 1 -0.448927 -0.893561 -0.003521 44.26331 1 MTRIX2 1 -0.893556 0.448938 -0.003507 27.28234 1 MTRIX3 1 0.004714 0.001572 -0.999988 19.10144 1 MASTER 448 0 0 10 24 0 0 9 2738 2 0 30 END