HEADER DNA BINDING PROTEIN 12-AUG-24 9D4S TITLE STRUCTURE OF G2L4 RT IN COMPLEX WITH 15 NUCLEOTIDE SNAPBACK SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP II INTRON-LIKE 4 REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GENBANK ACCESSION:WP_071557413 REFERENCE 1 (RESIDUES 1 COMPND 6 TO 415) AUTHORS XIONG,Y. AND EICKBUSH,T.H. TITLE ORIGIN AND EVOLUTION COMPND 7 OF RETROELEMENTS BASED UPON THEIR REVERSE TRANSCRIPTASE SEQUENCES COMPND 8 JOURNAL EMBO J 9 (10), 3353-3362 (1990); COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA; COMPND 11 CHAIN: C, P; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: 15 NUCLEOTIDES SINGLE STRAND DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GAMMAPROTEOBACTERIA; SOURCE 3 ORGANISM_TAXID: 1236; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS REVERSE TRANSCRIPTASE, MICROHOMOLOGY-MEDIATED END-JOINING, DNA KEYWDS 2 REPAIR., DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GUO,Y.ZHANG REVDAT 2 13-AUG-25 9D4S 1 JRNL REVDAT 1 30-JUL-25 9D4S 0 JRNL AUTH S.K.PARK,M.GUO,J.L.STAMOS,W.KIM,S.LEE,Y.J.ZHANG, JRNL AUTH 2 A.M.LAMBOWITZ JRNL TITL STRUCTURAL BASIS FOR THE EVOLUTION OF A DOMESTICATED GROUP JRNL TITL 2 II INTRON-LIKE REVERSE TRANSCRIPTASE TO FUNCTION IN HOST JRNL TITL 3 CELL DNA REPAIR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 08122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 40729381 JRNL DOI 10.1073/PNAS.2504208122 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 26164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3000 - 6.6600 0.99 1896 154 0.1948 0.1985 REMARK 3 2 6.6600 - 5.2900 0.98 1799 147 0.2347 0.2556 REMARK 3 3 5.2900 - 4.6200 0.99 1771 142 0.2214 0.2347 REMARK 3 4 4.6200 - 4.2000 0.99 1771 142 0.1999 0.2321 REMARK 3 5 4.2000 - 3.9000 0.99 1761 144 0.2234 0.2908 REMARK 3 6 3.9000 - 3.6700 0.98 1712 139 0.2372 0.3121 REMARK 3 7 3.6700 - 3.4800 0.98 1735 139 0.2494 0.3139 REMARK 3 8 3.4800 - 3.3300 0.98 1719 138 0.2625 0.3118 REMARK 3 9 3.3300 - 3.2000 0.98 1715 139 0.2635 0.3666 REMARK 3 10 3.2000 - 3.0900 0.98 1707 140 0.2597 0.3188 REMARK 3 11 3.0900 - 3.0000 0.97 1681 134 0.2767 0.3276 REMARK 3 12 3.0000 - 2.9100 0.96 1695 136 0.3073 0.3746 REMARK 3 13 2.9100 - 2.8400 0.95 1657 138 0.3175 0.4179 REMARK 3 14 2.8300 - 2.7700 0.91 1582 131 0.3126 0.3347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7171 REMARK 3 ANGLE : 1.502 9777 REMARK 3 CHIRALITY : 0.093 1099 REMARK 3 PLANARITY : 0.038 1167 REMARK 3 DIHEDRAL : 17.398 2721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9D4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 25% PEG3350, 0.2M REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.69900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.63800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.63800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.69900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA C 9 REMARK 465 DA C 10 REMARK 465 DC C 11 REMARK 465 DC C 12 REMARK 465 DC C 13 REMARK 465 PRO B 73 REMARK 465 DA P 9 REMARK 465 DA P 10 REMARK 465 DC P 11 REMARK 465 DC P 12 REMARK 465 DC P 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 6 O4' - C4' - C3' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 6 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DDG C 18 O3' - P - OP1 ANGL. DEV. = 13.8 DEGREES REMARK 500 MET B 134 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 135 CG - CD - NE ANGL. DEV. = 16.2 DEGREES REMARK 500 DA P 1 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG P 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT P 7 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA P 14 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC P 17 C3' - O3' - P ANGL. DEV. = -11.4 DEGREES REMARK 500 DDG P 18 O3' - P - OP2 ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 43 17.77 59.59 REMARK 500 GLN A 58 15.93 59.94 REMARK 500 ILE A 238 -131.47 53.37 REMARK 500 ASN A 391 75.86 -103.31 REMARK 500 THR B 111 118.77 -37.30 REMARK 500 THR B 136 16.14 -140.52 REMARK 500 ASN B 185 31.97 -95.79 REMARK 500 PRO B 199 48.56 -77.41 REMARK 500 ILE B 238 -131.31 54.06 REMARK 500 THR B 284 -9.84 -57.55 REMARK 500 GLN B 330 -2.12 80.24 REMARK 500 ASN B 362 74.49 -107.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 100 0.14 SIDE CHAIN REMARK 500 ARG A 101 0.09 SIDE CHAIN REMARK 500 ARG A 107 0.11 SIDE CHAIN REMARK 500 ARG A 122 0.25 SIDE CHAIN REMARK 500 ARG A 131 0.27 SIDE CHAIN REMARK 500 ARG A 180 0.18 SIDE CHAIN REMARK 500 ARG A 191 0.11 SIDE CHAIN REMARK 500 ARG A 236 0.18 SIDE CHAIN REMARK 500 ARG A 346 0.12 SIDE CHAIN REMARK 500 ARG B 12 0.21 SIDE CHAIN REMARK 500 ARG B 34 0.13 SIDE CHAIN REMARK 500 ARG B 43 0.11 SIDE CHAIN REMARK 500 ARG B 78 0.09 SIDE CHAIN REMARK 500 ARG B 101 0.10 SIDE CHAIN REMARK 500 ARG B 103 0.13 SIDE CHAIN REMARK 500 ARG B 107 0.12 SIDE CHAIN REMARK 500 ARG B 135 0.21 SIDE CHAIN REMARK 500 ARG B 139 0.26 SIDE CHAIN REMARK 500 ARG B 236 0.14 SIDE CHAIN REMARK 500 ARG B 308 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 145 OD1 REMARK 620 2 ILE A 146 O 83.2 REMARK 620 3 ASP A 239 OD2 88.2 89.8 REMARK 620 4 DCP A 502 O2B 167.8 84.8 93.8 REMARK 620 5 DCP A 502 O3G 87.6 110.5 158.6 94.7 REMARK 620 6 DCP A 502 O2A 100.4 162.6 73.5 91.7 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 146 O REMARK 620 2 ASP B 239 OD2 87.6 REMARK 620 3 DCP B 502 O1G 93.3 148.8 REMARK 620 4 DCP B 502 O1A 164.8 91.4 95.4 REMARK 620 5 DCP B 502 O1B 79.7 127.7 82.9 89.0 REMARK 620 N 1 2 3 4 DBREF 9D4S A 2 409 PDB 9D4S 9D4S 2 409 DBREF 9D4S C 1 18 PDB 9D4S 9D4S 1 18 DBREF 9D4S B 2 409 PDB 9D4S 9D4S 2 409 DBREF 9D4S P 1 18 PDB 9D4S 9D4S 1 18 SEQRES 1 A 408 SER ARG LEU TYR LYS ASP ILE CYS SER LEU ARG THR LEU SEQRES 2 A 408 TYR GLY ALA TRP ARG LYS VAL ARG SER SER ALA PHE LEU SEQRES 3 A 408 SER SER SER ASP GLU ILE ARG ARG GLU ALA GLU GLU PHE SEQRES 4 A 408 GLU SER ARG LEU PRO ASP SER LEU ILE GLU ILE GLN HIS SEQRES 5 A 408 ALA LEU SER LYS GLN ILE PHE ILE PHE LEU GLN GLN THR SEQRES 6 A 408 GLY VAL ALA GLN LYS LYS PRO GLY GLY LYS SER ARG PRO SEQRES 7 A 408 LEU VAL LEU ALA PRO ILE PRO ASN ARG VAL VAL GLN ARG SEQRES 8 A 408 ALA LEU LEU ASP VAL LEU GLN ARG ARG VAL ARG LEU VAL SEQRES 9 A 408 LYS ARG VAL LEU GLY THR PRO THR SER TYR GLY GLY ILE SEQRES 10 A 408 PRO ASP LYS ARG VAL ALA MET ALA ILE ALA ASP ALA ARG SEQRES 11 A 408 GLU ALA MET ARG THR GLY ALA ARG PHE HIS ILE ARG SER SEQRES 12 A 408 ASP ILE PRO ALA PHE PHE THR LYS ILE ASN LYS ASP ARG SEQRES 13 A 408 VAL LEU GLU LEU LEU ARG PRO HIS LEU ASN CYS GLU ALA SEQRES 14 A 408 THR LEU LYS LEU PHE GLU GLU ALA ILE ARG THR ASP LEU SEQRES 15 A 408 ALA ASN ILE ASP ASP LEU ARG ARG LYS GLY LEU ASP GLU SEQRES 16 A 408 ILE PHE PRO ILE GLY ILE GLU GLY VAL ALA GLN GLY SER SEQRES 17 A 408 PRO LEU SER PRO LEU LEU ALA ASN ILE TYR LEU ALA ASP SEQRES 18 A 408 PHE ASP LEU ALA MET ASN SER ASN GLY ILE THR CYS LEU SEQRES 19 A 408 ARG TYR ILE ASP ASP PHE LEU LEU LEU GLY ALA SER LEU SEQRES 20 A 408 SER ASP VAL ASP LYS ALA PHE ASN ARG ALA LEU LYS GLU SEQRES 21 A 408 LEU GLY LYS ILE GLY LEU GLU ALA TYR ASP PRO ARG THR SEQRES 22 A 408 ASP LYS THR LYS ALA SER ARG GLY ALA THR GLU ILE GLY SEQRES 23 A 408 PHE ASP PHE LEU GLY CYS ASN VAL SER PRO GLY LEU ILE SEQRES 24 A 408 GLN PRO SER GLU ALA THR ARG ARG ARG PHE ARG ALA LYS SEQRES 25 A 408 LEU ASP ALA GLU PHE VAL ALA ALA SER HIS ALA LEU ARG SEQRES 26 A 408 TYR ASN ALA GLN TYR GLN ASP GLY ASP GLY LYS TYR SER SEQRES 27 A 408 TYR SER SER ALA LEU TYR ARG ILE ASP LYS ILE ILE LEU SEQRES 28 A 408 GLY TRP GLY LYS ALA PHE THR PHE CYS ASN GLY SER GLN SEQRES 29 A 408 CYS MET ILE ALA LEU ASP ASP PHE ILE SER ASN LYS LEU SEQRES 30 A 408 ALA GLN LEU GLU ALA GLU LYS ILE ALA ILE LEU ALA ASN SEQRES 31 A 408 SER ASP SER THR VAL ARG ARG ARG VAL LEU GLY VAL ARG SEQRES 32 A 408 LEU LEU ILE ASP ILE SEQRES 1 C 18 DA DA DG DC DG DG DT DT DA DA DC DC DC SEQRES 2 C 18 DA DA DC DC DDG SEQRES 1 B 408 SER ARG LEU TYR LYS ASP ILE CYS SER LEU ARG THR LEU SEQRES 2 B 408 TYR GLY ALA TRP ARG LYS VAL ARG SER SER ALA PHE LEU SEQRES 3 B 408 SER SER SER ASP GLU ILE ARG ARG GLU ALA GLU GLU PHE SEQRES 4 B 408 GLU SER ARG LEU PRO ASP SER LEU ILE GLU ILE GLN HIS SEQRES 5 B 408 ALA LEU SER LYS GLN ILE PHE ILE PHE LEU GLN GLN THR SEQRES 6 B 408 GLY VAL ALA GLN LYS LYS PRO GLY GLY LYS SER ARG PRO SEQRES 7 B 408 LEU VAL LEU ALA PRO ILE PRO ASN ARG VAL VAL GLN ARG SEQRES 8 B 408 ALA LEU LEU ASP VAL LEU GLN ARG ARG VAL ARG LEU VAL SEQRES 9 B 408 LYS ARG VAL LEU GLY THR PRO THR SER TYR GLY GLY ILE SEQRES 10 B 408 PRO ASP LYS ARG VAL ALA MET ALA ILE ALA ASP ALA ARG SEQRES 11 B 408 GLU ALA MET ARG THR GLY ALA ARG PHE HIS ILE ARG SER SEQRES 12 B 408 ASP ILE PRO ALA PHE PHE THR LYS ILE ASN LYS ASP ARG SEQRES 13 B 408 VAL LEU GLU LEU LEU ARG PRO HIS LEU ASN CYS GLU ALA SEQRES 14 B 408 THR LEU LYS LEU PHE GLU GLU ALA ILE ARG THR ASP LEU SEQRES 15 B 408 ALA ASN ILE ASP ASP LEU ARG ARG LYS GLY LEU ASP GLU SEQRES 16 B 408 ILE PHE PRO ILE GLY ILE GLU GLY VAL ALA GLN GLY SER SEQRES 17 B 408 PRO LEU SER PRO LEU LEU ALA ASN ILE TYR LEU ALA ASP SEQRES 18 B 408 PHE ASP LEU ALA MET ASN SER ASN GLY ILE THR CYS LEU SEQRES 19 B 408 ARG TYR ILE ASP ASP PHE LEU LEU LEU GLY ALA SER LEU SEQRES 20 B 408 SER ASP VAL ASP LYS ALA PHE ASN ARG ALA LEU LYS GLU SEQRES 21 B 408 LEU GLY LYS ILE GLY LEU GLU ALA TYR ASP PRO ARG THR SEQRES 22 B 408 ASP LYS THR LYS ALA SER ARG GLY ALA THR GLU ILE GLY SEQRES 23 B 408 PHE ASP PHE LEU GLY CYS ASN VAL SER PRO GLY LEU ILE SEQRES 24 B 408 GLN PRO SER GLU ALA THR ARG ARG ARG PHE ARG ALA LYS SEQRES 25 B 408 LEU ASP ALA GLU PHE VAL ALA ALA SER HIS ALA LEU ARG SEQRES 26 B 408 TYR ASN ALA GLN TYR GLN ASP GLY ASP GLY LYS TYR SER SEQRES 27 B 408 TYR SER SER ALA LEU TYR ARG ILE ASP LYS ILE ILE LEU SEQRES 28 B 408 GLY TRP GLY LYS ALA PHE THR PHE CYS ASN GLY SER GLN SEQRES 29 B 408 CYS MET ILE ALA LEU ASP ASP PHE ILE SER ASN LYS LEU SEQRES 30 B 408 ALA GLN LEU GLU ALA GLU LYS ILE ALA ILE LEU ALA ASN SEQRES 31 B 408 SER ASP SER THR VAL ARG ARG ARG VAL LEU GLY VAL ARG SEQRES 32 B 408 LEU LEU ILE ASP ILE SEQRES 1 P 18 DA DA DG DC DG DG DT DT DA DA DC DC DC SEQRES 2 P 18 DA DA DC DC DDG HET DDG C 18 21 HET DDG P 18 21 HET MN A 501 1 HET DCP A 502 28 HET MN B 501 1 HET DCP B 502 28 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 2 DDG 2(C10 H14 N5 O6 P) FORMUL 5 MN 2(MN 2+) FORMUL 6 DCP 2(C9 H16 N3 O13 P3) FORMUL 9 HOH *7(H2 O) HELIX 1 AA1 SER A 2 CYS A 9 1 8 HELIX 2 AA2 SER A 10 LEU A 27 1 18 HELIX 3 AA3 SER A 30 SER A 42 1 13 HELIX 4 AA4 ARG A 43 LYS A 57 1 15 HELIX 5 AA5 PRO A 84 VAL A 102 1 19 HELIX 6 AA6 VAL A 102 THR A 111 1 10 HELIX 7 AA7 ARG A 122 THR A 136 1 15 HELIX 8 AA8 ALA A 148 ILE A 153 1 6 HELIX 9 AA9 ASN A 154 ASN A 167 1 14 HELIX 10 AB1 CYS A 168 ARG A 180 1 13 HELIX 11 AB2 ASN A 185 GLY A 193 1 9 HELIX 12 AB3 LEU A 194 PHE A 198 5 5 HELIX 13 AB4 PRO A 210 LEU A 220 1 11 HELIX 14 AB5 LEU A 220 ASN A 228 1 9 HELIX 15 AB6 SER A 247 ILE A 265 1 19 HELIX 16 AB7 SER A 303 TYR A 331 1 29 HELIX 17 AB8 SER A 339 PHE A 358 1 20 HELIX 18 AB9 SER A 364 ASN A 391 1 28 HELIX 19 AC1 ASP A 393 GLY A 402 1 10 HELIX 20 AC2 LEU A 405 ILE A 409 5 5 HELIX 21 AC3 ARG B 3 SER B 10 1 8 HELIX 22 AC4 SER B 10 PHE B 26 1 17 HELIX 23 AC5 SER B 30 SER B 42 1 13 HELIX 24 AC6 ARG B 43 LYS B 57 1 15 HELIX 25 AC7 PRO B 84 VAL B 102 1 19 HELIX 26 AC8 VAL B 102 THR B 111 1 10 HELIX 27 AC9 ARG B 122 MET B 134 1 13 HELIX 28 AD1 ALA B 148 ILE B 153 1 6 HELIX 29 AD2 ASN B 154 ARG B 163 1 10 HELIX 30 AD3 CYS B 168 ARG B 180 1 13 HELIX 31 AD4 ASN B 185 LYS B 192 1 8 HELIX 32 AD5 LEU B 194 PHE B 198 5 5 HELIX 33 AD6 PRO B 210 LEU B 220 1 11 HELIX 34 AD7 LEU B 220 ASN B 228 1 9 HELIX 35 AD8 SER B 247 ILE B 265 1 19 HELIX 36 AD9 SER B 303 ALA B 329 1 27 HELIX 37 AE1 SER B 339 PHE B 358 1 20 HELIX 38 AE2 GLY B 363 ASN B 391 1 29 HELIX 39 AE3 ASP B 393 GLY B 402 1 10 HELIX 40 AE4 LEU B 405 ILE B 409 5 5 SHEET 1 AA1 2 THR A 66 LYS A 71 0 SHEET 2 AA1 2 SER A 77 LEU A 82 -1 O LEU A 80 N VAL A 68 SHEET 1 AA2 4 THR A 233 TYR A 237 0 SHEET 2 AA2 4 ASP A 240 GLY A 245 -1 O ASP A 240 N TYR A 237 SHEET 3 AA2 4 PHE A 140 SER A 144 -1 N ILE A 142 O LEU A 243 SHEET 4 AA2 4 SER A 280 ALA A 283 -1 O GLY A 282 N HIS A 141 SHEET 1 AA3 3 PHE A 288 PHE A 290 0 SHEET 2 AA3 3 CYS A 293 VAL A 295 -1 O VAL A 295 N PHE A 288 SHEET 3 AA3 3 ILE A 300 PRO A 302 -1 O GLN A 301 N ASN A 294 SHEET 1 AA4 2 THR B 66 GLN B 70 0 SHEET 2 AA4 2 ARG B 78 LEU B 82 -1 O ARG B 78 N GLN B 70 SHEET 1 AA5 4 THR B 233 TYR B 237 0 SHEET 2 AA5 4 ASP B 240 GLY B 245 -1 O LEU B 244 N THR B 233 SHEET 3 AA5 4 PHE B 140 SER B 144 -1 N ILE B 142 O LEU B 243 SHEET 4 AA5 4 SER B 280 ALA B 283 -1 O SER B 280 N ARG B 143 SHEET 1 AA6 3 PHE B 288 PHE B 290 0 SHEET 2 AA6 3 CYS B 293 VAL B 295 -1 O VAL B 295 N PHE B 288 SHEET 3 AA6 3 ILE B 300 PRO B 302 -1 O GLN B 301 N ASN B 294 LINK O3' DC C 17 P DDG C 18 1555 1555 1.55 LINK O3' DC P 17 P DDG P 18 1555 1555 1.56 LINK OD1 ASP A 145 MN MN A 501 1555 1555 1.86 LINK O ILE A 146 MN MN A 501 1555 1555 2.18 LINK OD2 ASP A 239 MN MN A 501 1555 1555 2.08 LINK MN MN A 501 O2B DCP A 502 1555 1555 2.07 LINK MN MN A 501 O3G DCP A 502 1555 1555 2.17 LINK MN MN A 501 O2A DCP A 502 1555 1555 2.36 LINK O ILE B 146 MN MN B 501 1555 1555 2.27 LINK OD2 ASP B 239 MN MN B 501 1555 1555 1.85 LINK MN MN B 501 O1G DCP B 502 1555 1555 2.14 LINK MN MN B 501 O1A DCP B 502 1555 1555 1.95 LINK MN MN B 501 O1B DCP B 502 1555 1555 2.31 CRYST1 65.398 99.190 157.276 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006358 0.00000 CONECT 1146 6954 CONECT 1151 6954 CONECT 1888 6954 CONECT 3448 3459 CONECT 3459 3448 3460 3461 3462 CONECT 3460 3459 CONECT 3461 3459 CONECT 3462 3459 3463 CONECT 3463 3462 3464 CONECT 3464 3463 3465 3466 CONECT 3465 3464 3468 CONECT 3466 3464 3467 CONECT 3467 3466 3468 CONECT 3468 3465 3467 3469 CONECT 3469 3468 3470 3479 CONECT 3470 3469 3471 CONECT 3471 3470 3472 CONECT 3472 3471 3473 3479 CONECT 3473 3472 3474 3475 CONECT 3474 3473 CONECT 3475 3473 3476 CONECT 3476 3475 3477 3478 CONECT 3477 3476 CONECT 3478 3476 3479 CONECT 3479 3469 3472 3478 CONECT 4624 6983 CONECT 5361 6983 CONECT 6921 6932 CONECT 6932 6921 6933 6934 6935 CONECT 6933 6932 CONECT 6934 6932 CONECT 6935 6932 6936 CONECT 6936 6935 6937 CONECT 6937 6936 6938 6939 CONECT 6938 6937 6941 CONECT 6939 6937 6940 CONECT 6940 6939 6941 CONECT 6941 6938 6940 6942 CONECT 6942 6941 6943 6952 CONECT 6943 6942 6944 CONECT 6944 6943 6945 CONECT 6945 6944 6946 6952 CONECT 6946 6945 6947 6948 CONECT 6947 6946 CONECT 6948 6946 6949 CONECT 6949 6948 6950 6951 CONECT 6950 6949 CONECT 6951 6949 6952 CONECT 6952 6942 6945 6951 CONECT 6954 1146 1151 1888 6973 CONECT 6954 6977 6982 CONECT 6955 6956 6960 6963 CONECT 6956 6955 6957 6961 CONECT 6957 6956 6958 CONECT 6958 6957 6959 6962 CONECT 6959 6958 6960 CONECT 6960 6955 6959 CONECT 6961 6956 CONECT 6962 6958 CONECT 6963 6955 6964 6967 CONECT 6964 6963 6965 CONECT 6965 6964 6966 6968 CONECT 6966 6965 6967 6969 CONECT 6967 6963 6966 CONECT 6968 6965 CONECT 6969 6966 6970 CONECT 6970 6969 6971 CONECT 6971 6970 6972 6973 6974 CONECT 6972 6971 CONECT 6973 6954 6971 CONECT 6974 6971 6975 CONECT 6975 6974 6976 6977 6978 CONECT 6976 6975 CONECT 6977 6954 6975 CONECT 6978 6975 6979 CONECT 6979 6978 6980 6981 6982 CONECT 6980 6979 CONECT 6981 6979 CONECT 6982 6954 6979 CONECT 6983 4624 5361 7001 7005 CONECT 6983 7009 CONECT 6984 6985 6989 6992 CONECT 6985 6984 6986 6990 CONECT 6986 6985 6987 CONECT 6987 6986 6988 6991 CONECT 6988 6987 6989 CONECT 6989 6984 6988 CONECT 6990 6985 CONECT 6991 6987 CONECT 6992 6984 6993 6996 CONECT 6993 6992 6994 CONECT 6994 6993 6995 6997 CONECT 6995 6994 6996 6998 CONECT 6996 6992 6995 CONECT 6997 6994 CONECT 6998 6995 6999 CONECT 6999 6998 7000 CONECT 7000 6999 7001 7002 7003 CONECT 7001 6983 7000 CONECT 7002 7000 CONECT 7003 7000 7004 CONECT 7004 7003 7005 7006 7007 CONECT 7005 6983 7004 CONECT 7006 7004 CONECT 7007 7004 7008 CONECT 7008 7007 7009 7010 7011 CONECT 7009 6983 7008 CONECT 7010 7008 CONECT 7011 7008 MASTER 343 0 6 40 18 0 0 6 7014 4 109 68 END