data_9D5A # _entry.id 9D5A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9D5A pdb_00009d5a 10.2210/pdb9d5a/pdb WWPDB D_1000287311 ? ? EMDB EMD-46577 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-02 ? 2 'EM metadata' 1 0 2025-04-02 ? 3 FSC 1 0 2025-04-02 ? 4 'Half map' 1 0 2025-04-02 1 5 'Half map' 1 0 2025-04-02 2 6 Image 1 0 2025-04-02 ? 7 'Primary map' 1 0 2025-04-02 ? 8 'Structure model' 1 1 2025-04-30 ? 9 'Structure model' 1 2 2025-06-18 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 8 'Structure model' 'Data collection' 2 8 'Structure model' 'Database references' 3 9 'Structure model' 'Data collection' 4 9 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' citation 2 8 'Structure model' citation_author 3 8 'Structure model' em_admin 4 9 'Structure model' citation 5 9 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_citation.country' 2 8 'Structure model' '_citation.journal_abbrev' 3 8 'Structure model' '_citation.journal_id_ASTM' 4 8 'Structure model' '_citation.journal_id_CSD' 5 8 'Structure model' '_citation.journal_id_ISSN' 6 8 'Structure model' '_citation.pdbx_database_id_DOI' 7 8 'Structure model' '_citation.pdbx_database_id_PubMed' 8 8 'Structure model' '_citation.title' 9 8 'Structure model' '_citation.year' 10 8 'Structure model' '_em_admin.last_update' 11 9 'Structure model' '_citation.journal_volume' 12 9 'Structure model' '_citation.page_first' 13 9 'Structure model' '_citation.page_last' 14 9 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9D5A _pdbx_database_status.recvd_initial_deposition_date 2024-08-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of Citrobacter multi-ubiquitin protein, local refinement of one full-length protomer' _pdbx_database_related.db_id EMD-46577 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email kcorbett@ucsd.edu _pdbx_contact_author.name_first Kevin _pdbx_contact_author.name_last Corbett _pdbx_contact_author.name_mi D _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5854-2388 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gong, M.' 1 0009-0005-1404-2783 'Gu, Y.' 2 0000-0002-1514-1477 'Corbett, K.D.' 3 0000-0001-5854-2388 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 33 _citation.language ? _citation.page_first 1016 _citation.page_last 1026.e4 _citation.title 'Structural diversity and oligomerization of bacterial ubiquitin-like proteins.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2025.03.011 _citation.pdbx_database_id_PubMed 40250427 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gong, M.' 1 ? primary 'Ye, Q.' 2 ? primary 'Gu, Y.' 3 ? primary 'Chambers, L.R.' 4 ? primary 'Bobkov, A.A.' 5 ? primary 'Arakawa, N.K.' 6 ? primary 'Matyszewski, M.' 7 ? primary 'Corbett, K.D.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Multi-ubiquitin domain-containing protein' 28376.852 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKSSHHHHHHENLYFQSNAQDIQSQHHHRRFIEVADETLSFRQVVMEDSTPNGSQISAASGFKPDQMPVVLMLLPNGSLE DIRPDEVVDLSSEVRRFIVVESDRTYFFTIDGARLEWPCRFITGYSIRQLGDIGDNKKLLLEREDEADLEVQNDQIIDLD GDGIERFISRKATWKLNIQGKEFTFDTPTVVIRDAVIRAGLNPNQAWHIFLKVEGQPKVEKNIDDVIDLRTPGIEKLRLT PKDVNNG ; _entity_poly.pdbx_seq_one_letter_code_can ;MKSSHHHHHHENLYFQSNAQDIQSQHHHRRFIEVADETLSFRQVVMEDSTPNGSQISAASGFKPDQMPVVLMLLPNGSLE DIRPDEVVDLSSEVRRFIVVESDRTYFFTIDGARLEWPCRFITGYSIRQLGDIGDNKKLLLEREDEADLEVQNDQIIDLD GDGIERFISRKATWKLNIQGKEFTFDTPTVVIRDAVIRAGLNPNQAWHIFLKVEGQPKVEKNIDDVIDLRTPGIEKLRLT PKDVNNG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'CALCIUM ION' _pdbx_entity_nonpoly.comp_id CA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLU n 1 12 ASN n 1 13 LEU n 1 14 TYR n 1 15 PHE n 1 16 GLN n 1 17 SER n 1 18 ASN n 1 19 ALA n 1 20 GLN n 1 21 ASP n 1 22 ILE n 1 23 GLN n 1 24 SER n 1 25 GLN n 1 26 HIS n 1 27 HIS n 1 28 HIS n 1 29 ARG n 1 30 ARG n 1 31 PHE n 1 32 ILE n 1 33 GLU n 1 34 VAL n 1 35 ALA n 1 36 ASP n 1 37 GLU n 1 38 THR n 1 39 LEU n 1 40 SER n 1 41 PHE n 1 42 ARG n 1 43 GLN n 1 44 VAL n 1 45 VAL n 1 46 MET n 1 47 GLU n 1 48 ASP n 1 49 SER n 1 50 THR n 1 51 PRO n 1 52 ASN n 1 53 GLY n 1 54 SER n 1 55 GLN n 1 56 ILE n 1 57 SER n 1 58 ALA n 1 59 ALA n 1 60 SER n 1 61 GLY n 1 62 PHE n 1 63 LYS n 1 64 PRO n 1 65 ASP n 1 66 GLN n 1 67 MET n 1 68 PRO n 1 69 VAL n 1 70 VAL n 1 71 LEU n 1 72 MET n 1 73 LEU n 1 74 LEU n 1 75 PRO n 1 76 ASN n 1 77 GLY n 1 78 SER n 1 79 LEU n 1 80 GLU n 1 81 ASP n 1 82 ILE n 1 83 ARG n 1 84 PRO n 1 85 ASP n 1 86 GLU n 1 87 VAL n 1 88 VAL n 1 89 ASP n 1 90 LEU n 1 91 SER n 1 92 SER n 1 93 GLU n 1 94 VAL n 1 95 ARG n 1 96 ARG n 1 97 PHE n 1 98 ILE n 1 99 VAL n 1 100 VAL n 1 101 GLU n 1 102 SER n 1 103 ASP n 1 104 ARG n 1 105 THR n 1 106 TYR n 1 107 PHE n 1 108 PHE n 1 109 THR n 1 110 ILE n 1 111 ASP n 1 112 GLY n 1 113 ALA n 1 114 ARG n 1 115 LEU n 1 116 GLU n 1 117 TRP n 1 118 PRO n 1 119 CYS n 1 120 ARG n 1 121 PHE n 1 122 ILE n 1 123 THR n 1 124 GLY n 1 125 TYR n 1 126 SER n 1 127 ILE n 1 128 ARG n 1 129 GLN n 1 130 LEU n 1 131 GLY n 1 132 ASP n 1 133 ILE n 1 134 GLY n 1 135 ASP n 1 136 ASN n 1 137 LYS n 1 138 LYS n 1 139 LEU n 1 140 LEU n 1 141 LEU n 1 142 GLU n 1 143 ARG n 1 144 GLU n 1 145 ASP n 1 146 GLU n 1 147 ALA n 1 148 ASP n 1 149 LEU n 1 150 GLU n 1 151 VAL n 1 152 GLN n 1 153 ASN n 1 154 ASP n 1 155 GLN n 1 156 ILE n 1 157 ILE n 1 158 ASP n 1 159 LEU n 1 160 ASP n 1 161 GLY n 1 162 ASP n 1 163 GLY n 1 164 ILE n 1 165 GLU n 1 166 ARG n 1 167 PHE n 1 168 ILE n 1 169 SER n 1 170 ARG n 1 171 LYS n 1 172 ALA n 1 173 THR n 1 174 TRP n 1 175 LYS n 1 176 LEU n 1 177 ASN n 1 178 ILE n 1 179 GLN n 1 180 GLY n 1 181 LYS n 1 182 GLU n 1 183 PHE n 1 184 THR n 1 185 PHE n 1 186 ASP n 1 187 THR n 1 188 PRO n 1 189 THR n 1 190 VAL n 1 191 VAL n 1 192 ILE n 1 193 ARG n 1 194 ASP n 1 195 ALA n 1 196 VAL n 1 197 ILE n 1 198 ARG n 1 199 ALA n 1 200 GLY n 1 201 LEU n 1 202 ASN n 1 203 PRO n 1 204 ASN n 1 205 GLN n 1 206 ALA n 1 207 TRP n 1 208 HIS n 1 209 ILE n 1 210 PHE n 1 211 LEU n 1 212 LYS n 1 213 VAL n 1 214 GLU n 1 215 GLY n 1 216 GLN n 1 217 PRO n 1 218 LYS n 1 219 VAL n 1 220 GLU n 1 221 LYS n 1 222 ASN n 1 223 ILE n 1 224 ASP n 1 225 ASP n 1 226 VAL n 1 227 ILE n 1 228 ASP n 1 229 LEU n 1 230 ARG n 1 231 THR n 1 232 PRO n 1 233 GLY n 1 234 ILE n 1 235 GLU n 1 236 LYS n 1 237 LEU n 1 238 ARG n 1 239 LEU n 1 240 THR n 1 241 PRO n 1 242 LYS n 1 243 ASP n 1 244 VAL n 1 245 ASN n 1 246 ASN n 1 247 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 247 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Citrobacter sp. RHBSTW-00271' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2742642 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -17 ? ? ? A . n A 1 2 LYS 2 -16 ? ? ? A . n A 1 3 SER 3 -15 ? ? ? A . n A 1 4 SER 4 -14 ? ? ? A . n A 1 5 HIS 5 -13 ? ? ? A . n A 1 6 HIS 6 -12 ? ? ? A . n A 1 7 HIS 7 -11 ? ? ? A . n A 1 8 HIS 8 -10 ? ? ? A . n A 1 9 HIS 9 -9 ? ? ? A . n A 1 10 HIS 10 -8 ? ? ? A . n A 1 11 GLU 11 -7 ? ? ? A . n A 1 12 ASN 12 -6 ? ? ? A . n A 1 13 LEU 13 -5 ? ? ? A . n A 1 14 TYR 14 -4 ? ? ? A . n A 1 15 PHE 15 -3 ? ? ? A . n A 1 16 GLN 16 -2 ? ? ? A . n A 1 17 SER 17 -1 ? ? ? A . n A 1 18 ASN 18 0 ? ? ? A . n A 1 19 ALA 19 1 ? ? ? A . n A 1 20 GLN 20 2 ? ? ? A . n A 1 21 ASP 21 3 ? ? ? A . n A 1 22 ILE 22 4 ? ? ? A . n A 1 23 GLN 23 5 ? ? ? A . n A 1 24 SER 24 6 ? ? ? A . n A 1 25 GLN 25 7 ? ? ? A . n A 1 26 HIS 26 8 ? ? ? A . n A 1 27 HIS 27 9 ? ? ? A . n A 1 28 HIS 28 10 ? ? ? A . n A 1 29 ARG 29 11 ? ? ? A . n A 1 30 ARG 30 12 12 ARG ARG A . n A 1 31 PHE 31 13 13 PHE PHE A . n A 1 32 ILE 32 14 14 ILE ILE A . n A 1 33 GLU 33 15 15 GLU GLU A . n A 1 34 VAL 34 16 16 VAL VAL A . n A 1 35 ALA 35 17 17 ALA ALA A . n A 1 36 ASP 36 18 18 ASP ASP A . n A 1 37 GLU 37 19 19 GLU GLU A . n A 1 38 THR 38 20 20 THR THR A . n A 1 39 LEU 39 21 21 LEU LEU A . n A 1 40 SER 40 22 22 SER SER A . n A 1 41 PHE 41 23 23 PHE PHE A . n A 1 42 ARG 42 24 24 ARG ARG A . n A 1 43 GLN 43 25 25 GLN GLN A . n A 1 44 VAL 44 26 26 VAL VAL A . n A 1 45 VAL 45 27 27 VAL VAL A . n A 1 46 MET 46 28 28 MET MET A . n A 1 47 GLU 47 29 29 GLU GLU A . n A 1 48 ASP 48 30 30 ASP ASP A . n A 1 49 SER 49 31 31 SER SER A . n A 1 50 THR 50 32 32 THR THR A . n A 1 51 PRO 51 33 33 PRO PRO A . n A 1 52 ASN 52 34 34 ASN ASN A . n A 1 53 GLY 53 35 35 GLY GLY A . n A 1 54 SER 54 36 36 SER SER A . n A 1 55 GLN 55 37 37 GLN GLN A . n A 1 56 ILE 56 38 38 ILE ILE A . n A 1 57 SER 57 39 39 SER SER A . n A 1 58 ALA 58 40 40 ALA ALA A . n A 1 59 ALA 59 41 41 ALA ALA A . n A 1 60 SER 60 42 42 SER SER A . n A 1 61 GLY 61 43 43 GLY GLY A . n A 1 62 PHE 62 44 44 PHE PHE A . n A 1 63 LYS 63 45 45 LYS LYS A . n A 1 64 PRO 64 46 46 PRO PRO A . n A 1 65 ASP 65 47 47 ASP ASP A . n A 1 66 GLN 66 48 48 GLN GLN A . n A 1 67 MET 67 49 49 MET MET A . n A 1 68 PRO 68 50 50 PRO PRO A . n A 1 69 VAL 69 51 51 VAL VAL A . n A 1 70 VAL 70 52 52 VAL VAL A . n A 1 71 LEU 71 53 53 LEU LEU A . n A 1 72 MET 72 54 54 MET MET A . n A 1 73 LEU 73 55 55 LEU LEU A . n A 1 74 LEU 74 56 56 LEU LEU A . n A 1 75 PRO 75 57 57 PRO PRO A . n A 1 76 ASN 76 58 58 ASN ASN A . n A 1 77 GLY 77 59 59 GLY GLY A . n A 1 78 SER 78 60 60 SER SER A . n A 1 79 LEU 79 61 61 LEU LEU A . n A 1 80 GLU 80 62 62 GLU GLU A . n A 1 81 ASP 81 63 63 ASP ASP A . n A 1 82 ILE 82 64 64 ILE ILE A . n A 1 83 ARG 83 65 65 ARG ARG A . n A 1 84 PRO 84 66 66 PRO PRO A . n A 1 85 ASP 85 67 67 ASP ASP A . n A 1 86 GLU 86 68 68 GLU GLU A . n A 1 87 VAL 87 69 69 VAL VAL A . n A 1 88 VAL 88 70 70 VAL VAL A . n A 1 89 ASP 89 71 71 ASP ASP A . n A 1 90 LEU 90 72 72 LEU LEU A . n A 1 91 SER 91 73 73 SER SER A . n A 1 92 SER 92 74 74 SER SER A . n A 1 93 GLU 93 75 75 GLU GLU A . n A 1 94 VAL 94 76 76 VAL VAL A . n A 1 95 ARG 95 77 77 ARG ARG A . n A 1 96 ARG 96 78 78 ARG ARG A . n A 1 97 PHE 97 79 79 PHE PHE A . n A 1 98 ILE 98 80 80 ILE ILE A . n A 1 99 VAL 99 81 81 VAL VAL A . n A 1 100 VAL 100 82 82 VAL VAL A . n A 1 101 GLU 101 83 83 GLU GLU A . n A 1 102 SER 102 84 84 SER SER A . n A 1 103 ASP 103 85 85 ASP ASP A . n A 1 104 ARG 104 86 86 ARG ARG A . n A 1 105 THR 105 87 87 THR THR A . n A 1 106 TYR 106 88 88 TYR TYR A . n A 1 107 PHE 107 89 89 PHE PHE A . n A 1 108 PHE 108 90 90 PHE PHE A . n A 1 109 THR 109 91 91 THR THR A . n A 1 110 ILE 110 92 92 ILE ILE A . n A 1 111 ASP 111 93 93 ASP ASP A . n A 1 112 GLY 112 94 94 GLY GLY A . n A 1 113 ALA 113 95 95 ALA ALA A . n A 1 114 ARG 114 96 96 ARG ARG A . n A 1 115 LEU 115 97 97 LEU LEU A . n A 1 116 GLU 116 98 98 GLU GLU A . n A 1 117 TRP 117 99 99 TRP TRP A . n A 1 118 PRO 118 100 100 PRO PRO A . n A 1 119 CYS 119 101 101 CYS CYS A . n A 1 120 ARG 120 102 102 ARG ARG A . n A 1 121 PHE 121 103 103 PHE PHE A . n A 1 122 ILE 122 104 104 ILE ILE A . n A 1 123 THR 123 105 105 THR THR A . n A 1 124 GLY 124 106 106 GLY GLY A . n A 1 125 TYR 125 107 107 TYR TYR A . n A 1 126 SER 126 108 108 SER SER A . n A 1 127 ILE 127 109 109 ILE ILE A . n A 1 128 ARG 128 110 110 ARG ARG A . n A 1 129 GLN 129 111 111 GLN GLN A . n A 1 130 LEU 130 112 112 LEU LEU A . n A 1 131 GLY 131 113 113 GLY GLY A . n A 1 132 ASP 132 114 114 ASP ASP A . n A 1 133 ILE 133 115 115 ILE ILE A . n A 1 134 GLY 134 116 116 GLY GLY A . n A 1 135 ASP 135 117 117 ASP ASP A . n A 1 136 ASN 136 118 118 ASN ASN A . n A 1 137 LYS 137 119 119 LYS LYS A . n A 1 138 LYS 138 120 120 LYS LYS A . n A 1 139 LEU 139 121 121 LEU LEU A . n A 1 140 LEU 140 122 122 LEU LEU A . n A 1 141 LEU 141 123 123 LEU LEU A . n A 1 142 GLU 142 124 124 GLU GLU A . n A 1 143 ARG 143 125 125 ARG ARG A . n A 1 144 GLU 144 126 126 GLU GLU A . n A 1 145 ASP 145 127 127 ASP ASP A . n A 1 146 GLU 146 128 128 GLU GLU A . n A 1 147 ALA 147 129 129 ALA ALA A . n A 1 148 ASP 148 130 130 ASP ASP A . n A 1 149 LEU 149 131 131 LEU LEU A . n A 1 150 GLU 150 132 132 GLU GLU A . n A 1 151 VAL 151 133 133 VAL VAL A . n A 1 152 GLN 152 134 134 GLN GLN A . n A 1 153 ASN 153 135 135 ASN ASN A . n A 1 154 ASP 154 136 136 ASP ASP A . n A 1 155 GLN 155 137 137 GLN GLN A . n A 1 156 ILE 156 138 138 ILE ILE A . n A 1 157 ILE 157 139 139 ILE ILE A . n A 1 158 ASP 158 140 140 ASP ASP A . n A 1 159 LEU 159 141 141 LEU LEU A . n A 1 160 ASP 160 142 142 ASP ASP A . n A 1 161 GLY 161 143 143 GLY GLY A . n A 1 162 ASP 162 144 144 ASP ASP A . n A 1 163 GLY 163 145 145 GLY GLY A . n A 1 164 ILE 164 146 146 ILE ILE A . n A 1 165 GLU 165 147 147 GLU GLU A . n A 1 166 ARG 166 148 148 ARG ARG A . n A 1 167 PHE 167 149 149 PHE PHE A . n A 1 168 ILE 168 150 150 ILE ILE A . n A 1 169 SER 169 151 151 SER SER A . n A 1 170 ARG 170 152 152 ARG ARG A . n A 1 171 LYS 171 153 153 LYS LYS A . n A 1 172 ALA 172 154 154 ALA ALA A . n A 1 173 THR 173 155 155 THR THR A . n A 1 174 TRP 174 156 156 TRP TRP A . n A 1 175 LYS 175 157 157 LYS LYS A . n A 1 176 LEU 176 158 158 LEU LEU A . n A 1 177 ASN 177 159 159 ASN ASN A . n A 1 178 ILE 178 160 160 ILE ILE A . n A 1 179 GLN 179 161 161 GLN GLN A . n A 1 180 GLY 180 162 162 GLY GLY A . n A 1 181 LYS 181 163 163 LYS LYS A . n A 1 182 GLU 182 164 164 GLU GLU A . n A 1 183 PHE 183 165 165 PHE PHE A . n A 1 184 THR 184 166 166 THR THR A . n A 1 185 PHE 185 167 167 PHE PHE A . n A 1 186 ASP 186 168 168 ASP ASP A . n A 1 187 THR 187 169 169 THR THR A . n A 1 188 PRO 188 170 170 PRO PRO A . n A 1 189 THR 189 171 171 THR THR A . n A 1 190 VAL 190 172 172 VAL VAL A . n A 1 191 VAL 191 173 173 VAL VAL A . n A 1 192 ILE 192 174 174 ILE ILE A . n A 1 193 ARG 193 175 175 ARG ARG A . n A 1 194 ASP 194 176 176 ASP ASP A . n A 1 195 ALA 195 177 177 ALA ALA A . n A 1 196 VAL 196 178 178 VAL VAL A . n A 1 197 ILE 197 179 179 ILE ILE A . n A 1 198 ARG 198 180 180 ARG ARG A . n A 1 199 ALA 199 181 181 ALA ALA A . n A 1 200 GLY 200 182 182 GLY GLY A . n A 1 201 LEU 201 183 183 LEU LEU A . n A 1 202 ASN 202 184 184 ASN ASN A . n A 1 203 PRO 203 185 185 PRO PRO A . n A 1 204 ASN 204 186 186 ASN ASN A . n A 1 205 GLN 205 187 187 GLN GLN A . n A 1 206 ALA 206 188 188 ALA ALA A . n A 1 207 TRP 207 189 189 TRP TRP A . n A 1 208 HIS 208 190 190 HIS HIS A . n A 1 209 ILE 209 191 191 ILE ILE A . n A 1 210 PHE 210 192 192 PHE PHE A . n A 1 211 LEU 211 193 193 LEU LEU A . n A 1 212 LYS 212 194 194 LYS LYS A . n A 1 213 VAL 213 195 195 VAL VAL A . n A 1 214 GLU 214 196 196 GLU GLU A . n A 1 215 GLY 215 197 197 GLY GLY A . n A 1 216 GLN 216 198 198 GLN GLN A . n A 1 217 PRO 217 199 199 PRO PRO A . n A 1 218 LYS 218 200 200 LYS LYS A . n A 1 219 VAL 219 201 201 VAL VAL A . n A 1 220 GLU 220 202 202 GLU GLU A . n A 1 221 LYS 221 203 203 LYS LYS A . n A 1 222 ASN 222 204 204 ASN ASN A . n A 1 223 ILE 223 205 205 ILE ILE A . n A 1 224 ASP 224 206 206 ASP ASP A . n A 1 225 ASP 225 207 207 ASP ASP A . n A 1 226 VAL 226 208 208 VAL VAL A . n A 1 227 ILE 227 209 209 ILE ILE A . n A 1 228 ASP 228 210 210 ASP ASP A . n A 1 229 LEU 229 211 211 LEU LEU A . n A 1 230 ARG 230 212 212 ARG ARG A . n A 1 231 THR 231 213 213 THR THR A . n A 1 232 PRO 232 214 214 PRO PRO A . n A 1 233 GLY 233 215 215 GLY GLY A . n A 1 234 ILE 234 216 216 ILE ILE A . n A 1 235 GLU 235 217 217 GLU GLU A . n A 1 236 LYS 236 218 218 LYS LYS A . n A 1 237 LEU 237 219 219 LEU LEU A . n A 1 238 ARG 238 220 220 ARG ARG A . n A 1 239 LEU 239 221 221 LEU LEU A . n A 1 240 THR 240 222 222 THR THR A . n A 1 241 PRO 241 223 223 PRO PRO A . n A 1 242 LYS 242 224 ? ? ? A . n A 1 243 ASP 243 225 ? ? ? A . n A 1 244 VAL 244 226 ? ? ? A . n A 1 245 ASN 245 227 ? ? ? A . n A 1 246 ASN 246 228 ? ? ? A . n A 1 247 GLY 247 229 ? ? ? A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 301 301 CA CA A . C 2 CA 1 302 302 CA CA A . D 2 CA 1 303 303 CA CA A . E 2 CA 1 304 304 CA CA A . F 2 CA 1 305 305 CA CA A . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9D5A _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9D5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9D5A _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 124.87 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9D5A _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0042 ? 1729 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.4183 ? 2342 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0480 ? 265 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0037 ? 310 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 9.0286 ? 661 ? f_dihedral_angle_d ? ? # _struct.entry_id 9D5A _struct.title 'Structure of Citrobacter multi-ubiquitin protein, local refinement of one full-length protomer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9D5A _struct_keywords.text 'filament, beta-grasp, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9D5A _struct_ref.pdbx_db_accession 9D5A _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9D5A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 247 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9D5A _struct_ref_seq.db_align_beg -17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 229 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -17 _struct_ref_seq.pdbx_auth_seq_align_end 229 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 52 ? SER A 60 ? ASN A 34 SER A 42 1 ? 9 HELX_P HELX_P2 AA2 GLY A 124 ? ASP A 132 ? GLY A 106 ASP A 114 1 ? 9 HELX_P HELX_P3 AA3 ILE A 192 ? GLY A 200 ? ILE A 174 GLY A 182 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 48 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 30 A CA 303 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc2 metalc ? ? A THR 50 O ? ? ? 1_555 D CA . CA ? ? A THR 32 A CA 303 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc3 metalc ? ? A THR 50 OG1 ? ? ? 1_555 D CA . CA ? ? A THR 32 A CA 303 1_555 ? ? ? ? ? ? ? 2.603 ? ? metalc4 metalc ? ? A GLU 80 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 62 A CA 302 1_555 ? ? ? ? ? ? ? 3.012 ? ? metalc5 metalc ? ? A ASP 81 O ? ? ? 1_555 C CA . CA ? ? A ASP 63 A CA 302 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc6 metalc ? ? A GLU 86 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 68 A CA 302 1_555 ? ? ? ? ? ? ? 2.441 ? ? metalc7 metalc ? ? A GLU 86 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 68 A CA 302 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc8 metalc ? ? A ARG 143 O ? ? ? 1_555 E CA . CA ? ? A ARG 125 A CA 304 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc9 metalc ? ? A ASP 148 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 130 A CA 304 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc10 metalc ? ? A LEU 159 O ? ? ? 1_555 B CA . CA ? ? A LEU 141 A CA 301 1_555 ? ? ? ? ? ? ? 2.389 ? ? metalc11 metalc ? ? A GLY 161 O ? ? ? 1_555 B CA . CA ? ? A GLY 143 A CA 301 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc12 metalc ? ? A GLY 163 O ? ? ? 1_555 B CA . CA ? ? A GLY 145 A CA 301 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc13 metalc ? ? A GLU 165 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 147 A CA 301 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc14 metalc ? ? A GLU 165 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 147 A CA 301 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc15 metalc ? ? A LEU 229 O ? ? ? 1_555 F CA . CA ? ? A LEU 211 A CA 305 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc16 metalc ? ? A THR 231 O ? ? ? 1_555 F CA . CA ? ? A THR 213 A CA 305 1_555 ? ? ? ? ? ? ? 2.741 ? ? metalc17 metalc ? ? A GLY 233 O ? ? ? 1_555 F CA . CA ? ? A GLY 215 A CA 305 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc18 metalc ? ? A GLU 235 OE1 ? ? ? 1_555 F CA . CA ? ? A GLU 217 A CA 305 1_555 ? ? ? ? ? ? ? 2.824 ? ? metalc19 metalc ? ? A GLU 235 OE2 ? ? ? 1_555 F CA . CA ? ? A GLU 217 A CA 305 1_555 ? ? ? ? ? ? ? 3.081 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 48 ? A ASP 30 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? A THR 50 ? A THR 32 ? 1_555 78.2 ? 2 OD2 ? A ASP 48 ? A ASP 30 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OG1 ? A THR 50 ? A THR 32 ? 1_555 105.4 ? 3 O ? A THR 50 ? A THR 32 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OG1 ? A THR 50 ? A THR 32 ? 1_555 61.9 ? 4 OE2 ? A GLU 80 ? A GLU 62 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? A ASP 81 ? A ASP 63 ? 1_555 87.8 ? 5 OE2 ? A GLU 80 ? A GLU 62 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OE1 ? A GLU 86 ? A GLU 68 ? 1_555 141.1 ? 6 O ? A ASP 81 ? A ASP 63 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OE1 ? A GLU 86 ? A GLU 68 ? 1_555 80.0 ? 7 OE2 ? A GLU 80 ? A GLU 62 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OE2 ? A GLU 86 ? A GLU 68 ? 1_555 100.2 ? 8 O ? A ASP 81 ? A ASP 63 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OE2 ? A GLU 86 ? A GLU 68 ? 1_555 103.2 ? 9 OE1 ? A GLU 86 ? A GLU 68 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OE2 ? A GLU 86 ? A GLU 68 ? 1_555 48.5 ? 10 O ? A ARG 143 ? A ARG 125 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASP 148 ? A ASP 130 ? 1_555 89.0 ? 11 O ? A LEU 159 ? A LEU 141 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A GLY 161 ? A GLY 143 ? 1_555 86.2 ? 12 O ? A LEU 159 ? A LEU 141 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A GLY 163 ? A GLY 145 ? 1_555 164.9 ? 13 O ? A GLY 161 ? A GLY 143 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A GLY 163 ? A GLY 145 ? 1_555 82.3 ? 14 O ? A LEU 159 ? A LEU 141 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE1 ? A GLU 165 ? A GLU 147 ? 1_555 98.3 ? 15 O ? A GLY 161 ? A GLY 143 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE1 ? A GLU 165 ? A GLU 147 ? 1_555 125.7 ? 16 O ? A GLY 163 ? A GLY 145 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE1 ? A GLU 165 ? A GLU 147 ? 1_555 80.9 ? 17 O ? A LEU 159 ? A LEU 141 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE2 ? A GLU 165 ? A GLU 147 ? 1_555 82.1 ? 18 O ? A GLY 161 ? A GLY 143 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE2 ? A GLU 165 ? A GLU 147 ? 1_555 72.1 ? 19 O ? A GLY 163 ? A GLY 145 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE2 ? A GLU 165 ? A GLU 147 ? 1_555 85.2 ? 20 OE1 ? A GLU 165 ? A GLU 147 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE2 ? A GLU 165 ? A GLU 147 ? 1_555 55.4 ? 21 O ? A LEU 229 ? A LEU 211 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 O ? A THR 231 ? A THR 213 ? 1_555 78.8 ? 22 O ? A LEU 229 ? A LEU 211 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 O ? A GLY 233 ? A GLY 215 ? 1_555 155.9 ? 23 O ? A THR 231 ? A THR 213 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 O ? A GLY 233 ? A GLY 215 ? 1_555 78.8 ? 24 O ? A LEU 229 ? A LEU 211 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 OE1 ? A GLU 235 ? A GLU 217 ? 1_555 101.9 ? 25 O ? A THR 231 ? A THR 213 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 OE1 ? A GLU 235 ? A GLU 217 ? 1_555 110.6 ? 26 O ? A GLY 233 ? A GLY 215 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 OE1 ? A GLU 235 ? A GLU 217 ? 1_555 78.1 ? 27 O ? A LEU 229 ? A LEU 211 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 OE2 ? A GLU 235 ? A GLU 217 ? 1_555 71.6 ? 28 O ? A THR 231 ? A THR 213 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 OE2 ? A GLU 235 ? A GLU 217 ? 1_555 75.0 ? 29 O ? A GLY 233 ? A GLY 215 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 OE2 ? A GLU 235 ? A GLU 217 ? 1_555 94.2 ? 30 OE1 ? A GLU 235 ? A GLU 217 ? 1_555 CA ? F CA . ? A CA 305 ? 1_555 OE2 ? A GLU 235 ? A GLU 217 ? 1_555 43.2 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 5 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 42 ? VAL A 45 ? ARG A 24 VAL A 27 AA1 2 PHE A 31 ? ALA A 35 ? PHE A 13 ALA A 17 AA1 3 ARG A 96 ? VAL A 100 ? ARG A 78 VAL A 82 AA1 4 VAL A 69 ? LEU A 73 ? VAL A 51 LEU A 55 AA1 5 LEU A 79 ? ASP A 81 ? LEU A 61 ASP A 63 AA2 1 ALA A 113 ? TRP A 117 ? ALA A 95 TRP A 99 AA2 2 TYR A 106 ? ILE A 110 ? TYR A 88 ILE A 92 AA2 3 GLU A 165 ? LYS A 171 ? GLU A 147 LYS A 153 AA2 4 LYS A 137 ? LEU A 141 ? LYS A 119 LEU A 123 AA2 5 LEU A 149 ? GLU A 150 ? LEU A 131 GLU A 132 AA3 1 PHE A 121 ? THR A 123 ? PHE A 103 THR A 105 AA3 2 ILE A 156 ? ASP A 158 ? ILE A 138 ASP A 140 AA4 1 LYS A 181 ? PHE A 185 ? LYS A 163 PHE A 167 AA4 2 TRP A 174 ? ILE A 178 ? TRP A 156 ILE A 160 AA4 3 GLU A 235 ? THR A 240 ? GLU A 217 THR A 222 AA4 4 HIS A 208 ? LYS A 212 ? HIS A 190 LYS A 194 AA4 5 VAL A 219 ? LYS A 221 ? VAL A 201 LYS A 203 AA5 1 THR A 189 ? VAL A 191 ? THR A 171 VAL A 173 AA5 2 VAL A 226 ? ASP A 228 ? VAL A 208 ASP A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 44 ? O VAL A 26 N ILE A 32 ? N ILE A 14 AA1 2 3 N ALA A 35 ? N ALA A 17 O VAL A 99 ? O VAL A 81 AA1 3 4 O ARG A 96 ? O ARG A 78 N LEU A 73 ? N LEU A 55 AA1 4 5 N MET A 72 ? N MET A 54 O GLU A 80 ? O GLU A 62 AA2 1 2 O LEU A 115 ? O LEU A 97 N PHE A 108 ? N PHE A 90 AA2 2 3 N THR A 109 ? N THR A 91 O PHE A 167 ? O PHE A 149 AA2 3 4 O ARG A 170 ? O ARG A 152 N LYS A 138 ? N LYS A 120 AA2 4 5 N LEU A 141 ? N LEU A 123 O LEU A 149 ? O LEU A 131 AA3 1 2 N ILE A 122 ? N ILE A 104 O ILE A 157 ? O ILE A 139 AA4 1 2 O PHE A 183 ? O PHE A 165 N LEU A 176 ? N LEU A 158 AA4 2 3 N ASN A 177 ? N ASN A 159 O GLU A 235 ? O GLU A 217 AA4 3 4 O THR A 240 ? O THR A 222 N HIS A 208 ? N HIS A 190 AA4 4 5 N LEU A 211 ? N LEU A 193 O VAL A 219 ? O VAL A 201 AA5 1 2 N VAL A 190 ? N VAL A 172 O ILE A 227 ? O ILE A 209 # _pdbx_entry_details.entry_id 9D5A _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9D5A _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9D5A _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.73 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 148697 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Filament assembly of Citrobacter sp. ubiquitin-like (Ubl) protein with Ca ion' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9D5A _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9D5A _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9D5A _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -17 ? A MET 1 2 1 Y 1 A LYS -16 ? A LYS 2 3 1 Y 1 A SER -15 ? A SER 3 4 1 Y 1 A SER -14 ? A SER 4 5 1 Y 1 A HIS -13 ? A HIS 5 6 1 Y 1 A HIS -12 ? A HIS 6 7 1 Y 1 A HIS -11 ? A HIS 7 8 1 Y 1 A HIS -10 ? A HIS 8 9 1 Y 1 A HIS -9 ? A HIS 9 10 1 Y 1 A HIS -8 ? A HIS 10 11 1 Y 1 A GLU -7 ? A GLU 11 12 1 Y 1 A ASN -6 ? A ASN 12 13 1 Y 1 A LEU -5 ? A LEU 13 14 1 Y 1 A TYR -4 ? A TYR 14 15 1 Y 1 A PHE -3 ? A PHE 15 16 1 Y 1 A GLN -2 ? A GLN 16 17 1 Y 1 A SER -1 ? A SER 17 18 1 Y 1 A ASN 0 ? A ASN 18 19 1 Y 1 A ALA 1 ? A ALA 19 20 1 Y 1 A GLN 2 ? A GLN 20 21 1 Y 1 A ASP 3 ? A ASP 21 22 1 Y 1 A ILE 4 ? A ILE 22 23 1 Y 1 A GLN 5 ? A GLN 23 24 1 Y 1 A SER 6 ? A SER 24 25 1 Y 1 A GLN 7 ? A GLN 25 26 1 Y 1 A HIS 8 ? A HIS 26 27 1 Y 1 A HIS 9 ? A HIS 27 28 1 Y 1 A HIS 10 ? A HIS 28 29 1 Y 1 A ARG 11 ? A ARG 29 30 1 Y 1 A LYS 224 ? A LYS 242 31 1 Y 1 A ASP 225 ? A ASP 243 32 1 Y 1 A VAL 226 ? A VAL 244 33 1 Y 1 A ASN 227 ? A ASN 245 34 1 Y 1 A ASN 228 ? A ASN 246 35 1 Y 1 A GLY 229 ? A GLY 247 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 ILE N N N N 159 ILE CA C N S 160 ILE C C N N 161 ILE O O N N 162 ILE CB C N S 163 ILE CG1 C N N 164 ILE CG2 C N N 165 ILE CD1 C N N 166 ILE OXT O N N 167 ILE H H N N 168 ILE H2 H N N 169 ILE HA H N N 170 ILE HB H N N 171 ILE HG12 H N N 172 ILE HG13 H N N 173 ILE HG21 H N N 174 ILE HG22 H N N 175 ILE HG23 H N N 176 ILE HD11 H N N 177 ILE HD12 H N N 178 ILE HD13 H N N 179 ILE HXT H N N 180 LEU N N N N 181 LEU CA C N S 182 LEU C C N N 183 LEU O O N N 184 LEU CB C N N 185 LEU CG C N N 186 LEU CD1 C N N 187 LEU CD2 C N N 188 LEU OXT O N N 189 LEU H H N N 190 LEU H2 H N N 191 LEU HA H N N 192 LEU HB2 H N N 193 LEU HB3 H N N 194 LEU HG H N N 195 LEU HD11 H N N 196 LEU HD12 H N N 197 LEU HD13 H N N 198 LEU HD21 H N N 199 LEU HD22 H N N 200 LEU HD23 H N N 201 LEU HXT H N N 202 LYS N N N N 203 LYS CA C N S 204 LYS C C N N 205 LYS O O N N 206 LYS CB C N N 207 LYS CG C N N 208 LYS CD C N N 209 LYS CE C N N 210 LYS NZ N N N 211 LYS OXT O N N 212 LYS H H N N 213 LYS H2 H N N 214 LYS HA H N N 215 LYS HB2 H N N 216 LYS HB3 H N N 217 LYS HG2 H N N 218 LYS HG3 H N N 219 LYS HD2 H N N 220 LYS HD3 H N N 221 LYS HE2 H N N 222 LYS HE3 H N N 223 LYS HZ1 H N N 224 LYS HZ2 H N N 225 LYS HZ3 H N N 226 LYS HXT H N N 227 MET N N N N 228 MET CA C N S 229 MET C C N N 230 MET O O N N 231 MET CB C N N 232 MET CG C N N 233 MET SD S N N 234 MET CE C N N 235 MET OXT O N N 236 MET H H N N 237 MET H2 H N N 238 MET HA H N N 239 MET HB2 H N N 240 MET HB3 H N N 241 MET HG2 H N N 242 MET HG3 H N N 243 MET HE1 H N N 244 MET HE2 H N N 245 MET HE3 H N N 246 MET HXT H N N 247 PHE N N N N 248 PHE CA C N S 249 PHE C C N N 250 PHE O O N N 251 PHE CB C N N 252 PHE CG C Y N 253 PHE CD1 C Y N 254 PHE CD2 C Y N 255 PHE CE1 C Y N 256 PHE CE2 C Y N 257 PHE CZ C Y N 258 PHE OXT O N N 259 PHE H H N N 260 PHE H2 H N N 261 PHE HA H N N 262 PHE HB2 H N N 263 PHE HB3 H N N 264 PHE HD1 H N N 265 PHE HD2 H N N 266 PHE HE1 H N N 267 PHE HE2 H N N 268 PHE HZ H N N 269 PHE HXT H N N 270 PRO N N N N 271 PRO CA C N S 272 PRO C C N N 273 PRO O O N N 274 PRO CB C N N 275 PRO CG C N N 276 PRO CD C N N 277 PRO OXT O N N 278 PRO H H N N 279 PRO HA H N N 280 PRO HB2 H N N 281 PRO HB3 H N N 282 PRO HG2 H N N 283 PRO HG3 H N N 284 PRO HD2 H N N 285 PRO HD3 H N N 286 PRO HXT H N N 287 SER N N N N 288 SER CA C N S 289 SER C C N N 290 SER O O N N 291 SER CB C N N 292 SER OG O N N 293 SER OXT O N N 294 SER H H N N 295 SER H2 H N N 296 SER HA H N N 297 SER HB2 H N N 298 SER HB3 H N N 299 SER HG H N N 300 SER HXT H N N 301 THR N N N N 302 THR CA C N S 303 THR C C N N 304 THR O O N N 305 THR CB C N R 306 THR OG1 O N N 307 THR CG2 C N N 308 THR OXT O N N 309 THR H H N N 310 THR H2 H N N 311 THR HA H N N 312 THR HB H N N 313 THR HG1 H N N 314 THR HG21 H N N 315 THR HG22 H N N 316 THR HG23 H N N 317 THR HXT H N N 318 TRP N N N N 319 TRP CA C N S 320 TRP C C N N 321 TRP O O N N 322 TRP CB C N N 323 TRP CG C Y N 324 TRP CD1 C Y N 325 TRP CD2 C Y N 326 TRP NE1 N Y N 327 TRP CE2 C Y N 328 TRP CE3 C Y N 329 TRP CZ2 C Y N 330 TRP CZ3 C Y N 331 TRP CH2 C Y N 332 TRP OXT O N N 333 TRP H H N N 334 TRP H2 H N N 335 TRP HA H N N 336 TRP HB2 H N N 337 TRP HB3 H N N 338 TRP HD1 H N N 339 TRP HE1 H N N 340 TRP HE3 H N N 341 TRP HZ2 H N N 342 TRP HZ3 H N N 343 TRP HH2 H N N 344 TRP HXT H N N 345 TYR N N N N 346 TYR CA C N S 347 TYR C C N N 348 TYR O O N N 349 TYR CB C N N 350 TYR CG C Y N 351 TYR CD1 C Y N 352 TYR CD2 C Y N 353 TYR CE1 C Y N 354 TYR CE2 C Y N 355 TYR CZ C Y N 356 TYR OH O N N 357 TYR OXT O N N 358 TYR H H N N 359 TYR H2 H N N 360 TYR HA H N N 361 TYR HB2 H N N 362 TYR HB3 H N N 363 TYR HD1 H N N 364 TYR HD2 H N N 365 TYR HE1 H N N 366 TYR HE2 H N N 367 TYR HH H N N 368 TYR HXT H N N 369 VAL N N N N 370 VAL CA C N S 371 VAL C C N N 372 VAL O O N N 373 VAL CB C N N 374 VAL CG1 C N N 375 VAL CG2 C N N 376 VAL OXT O N N 377 VAL H H N N 378 VAL H2 H N N 379 VAL HA H N N 380 VAL HB H N N 381 VAL HG11 H N N 382 VAL HG12 H N N 383 VAL HG13 H N N 384 VAL HG21 H N N 385 VAL HG22 H N N 386 VAL HG23 H N N 387 VAL HXT H N N 388 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-13 _em_admin.deposition_site RCSB _em_admin.entry_id 9D5A _em_admin.last_update 2025-06-18 _em_admin.map_release_date 2025-04-02 _em_admin.title 'Structure of Citrobacter multi-ubiquitin protein, local refinement of one full-length protomer' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 25 mM C4H11NO3 1 Tris 1 300 mM NaCl 2 'sodium chloride' 1 5 mM MgCl2 3 Calcium 1 1 mM C4H10O2S2 4 DTT 1 5 percent C3H8O3 5 glycerol # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 20 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2742642 _em_entity_assembly_naturalsource.organism 'Citrobacter sp. RHBSTW-00271' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 45 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.21.1_5286 'IMAGE ACQUISITION' ? 3 1 1 1 ? ? MASKING ? 4 1 1 1 ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? OTHER ? 9 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R35 GM144121' _pdbx_audit_support.ordinal 1 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9D5A _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O S # loop_ #