HEADER LYASE 15-AUG-24 9D6M TITLE NITRILE HYDRATASE BR157K MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBALT-CONTAINING NITRILE HYDRATASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-NHASE,L-NITRILASE; COMPND 5 EC: 4.2.1.84; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COBALT-CONTAINING NITRILE HYDRATASE SUBUNIT BETA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: L-NHASE,L-NITRILASE; COMPND 11 EC: 4.2.1.84; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDONOCARDIA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 1848; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PSEUDONOCARDIA THERMOPHILA; SOURCE 8 ORGANISM_TAXID: 1848; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NITRILE HYDRATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.MILLER,R.C.HOLZ,D.LIU,N.KALEY REVDAT 1 28-AUG-24 9D6M 0 JRNL AUTH C.MILLER,D.HUNTOON,N.KALEY,I.OGUTU,A.T.FIEDLER,B.BENNETT, JRNL AUTH 2 D.LIU,R.HOLZ JRNL TITL ROLE OF SECOND-SPHERE ARGININE RESIDUES IN METAL BINDING AND JRNL TITL 2 METALLOCENTRE ASSEMBLY IN NITRILE HYDRATASES. JRNL REF J INORG BIOCHEM V. 256 12565 2024 JRNL REFN ISSN 1873-3344 JRNL PMID 38677005 JRNL DOI 10.1016/J.JINORGBIO.2024.112565 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_5156: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 67530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.4700 1.00 2913 144 0.1712 0.1954 REMARK 3 2 4.4700 - 3.5600 1.00 2769 145 0.1494 0.1553 REMARK 3 3 3.5600 - 3.1100 1.00 2727 146 0.1506 0.1628 REMARK 3 4 3.1100 - 2.8300 1.00 2698 160 0.1683 0.1863 REMARK 3 5 2.8300 - 2.6200 1.00 2683 148 0.1669 0.2101 REMARK 3 6 2.6200 - 2.4700 1.00 2709 120 0.1708 0.1909 REMARK 3 7 2.4700 - 2.3500 1.00 2651 167 0.1670 0.1918 REMARK 3 8 2.3500 - 2.2400 1.00 2703 111 0.1653 0.1805 REMARK 3 9 2.2400 - 2.1600 1.00 2669 128 0.1662 0.1902 REMARK 3 10 2.1600 - 2.0800 1.00 2686 132 0.1697 0.1849 REMARK 3 11 2.0800 - 2.0200 1.00 2623 173 0.1723 0.2089 REMARK 3 12 2.0200 - 1.9600 1.00 2639 152 0.1725 0.2201 REMARK 3 13 1.9600 - 1.9100 1.00 2656 150 0.1835 0.1952 REMARK 3 14 1.9100 - 1.8600 1.00 2646 139 0.1823 0.2300 REMARK 3 15 1.8600 - 1.8200 1.00 2656 119 0.1838 0.2152 REMARK 3 16 1.8200 - 1.7800 1.00 2600 153 0.1909 0.2066 REMARK 3 17 1.7800 - 1.7500 1.00 2660 139 0.1921 0.2144 REMARK 3 18 1.7500 - 1.7100 1.00 2649 152 0.1958 0.2137 REMARK 3 19 1.7100 - 1.6800 1.00 2619 137 0.1928 0.1936 REMARK 3 20 1.6800 - 1.6500 1.00 2662 109 0.2041 0.2523 REMARK 3 21 1.6500 - 1.6300 1.00 2634 153 0.2047 0.2611 REMARK 3 22 1.6300 - 1.6000 1.00 2598 160 0.2124 0.2333 REMARK 3 23 1.6000 - 1.5800 1.00 2636 144 0.2261 0.2576 REMARK 3 24 1.5800 - 1.5600 0.99 2622 141 0.2403 0.2780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : 0.828 NULL REMARK 3 CHIRALITY : 0.051 512 REMARK 3 PLANARITY : 0.008 649 REMARK 3 DIHEDRAL : 16.177 1363 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7713 44.4234 11.2141 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.1115 REMARK 3 T33: 0.1544 T12: -0.0425 REMARK 3 T13: -0.0325 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.5065 L22: 0.8893 REMARK 3 L33: 2.2608 L12: 0.2247 REMARK 3 L13: 1.2012 L23: -0.8890 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: 0.1234 S13: 0.0009 REMARK 3 S21: 0.0178 S22: 0.0425 S23: -0.0412 REMARK 3 S31: -0.4608 S32: 0.3094 S33: 0.0351 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4720 16.6232 25.3886 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.1456 REMARK 3 T33: 0.1908 T12: 0.0238 REMARK 3 T13: -0.0445 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 0.5178 L22: 2.1754 REMARK 3 L33: 0.9424 L12: -0.3175 REMARK 3 L13: -0.4354 L23: 0.6080 REMARK 3 S TENSOR REMARK 3 S11: -0.0813 S12: -0.0753 S13: -0.1252 REMARK 3 S21: 0.1627 S22: 0.0257 S23: -0.1206 REMARK 3 S31: 0.1258 S32: 0.1036 S33: 0.0580 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4180 11.6499 11.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.2781 T22: 0.0924 REMARK 3 T33: 0.1882 T12: -0.0126 REMARK 3 T13: 0.0065 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.4482 L22: 0.3017 REMARK 3 L33: 3.0417 L12: 0.5421 REMARK 3 L13: 0.9208 L23: -0.6322 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: 0.0593 S13: -0.2638 REMARK 3 S21: -0.0439 S22: 0.0499 S23: -0.0710 REMARK 3 S31: 0.1802 S32: 0.0406 S33: 0.1160 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7154 14.9488 6.2455 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.1224 REMARK 3 T33: 0.1433 T12: -0.0105 REMARK 3 T13: 0.0043 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.5587 L22: 2.1570 REMARK 3 L33: 1.3238 L12: 0.3479 REMARK 3 L13: 0.0823 L23: -0.3133 REMARK 3 S TENSOR REMARK 3 S11: -0.1027 S12: 0.3249 S13: -0.1468 REMARK 3 S21: -0.2268 S22: 0.0197 S23: -0.0928 REMARK 3 S31: 0.2295 S32: 0.0652 S33: 0.0870 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8663 8.5275 11.8962 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.1746 REMARK 3 T33: 0.3043 T12: 0.0477 REMARK 3 T13: 0.0130 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 6.8179 L22: 4.1254 REMARK 3 L33: 3.7343 L12: -2.9376 REMARK 3 L13: 2.6636 L23: -2.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.2977 S13: -0.0343 REMARK 3 S21: -0.0667 S22: -0.3270 S23: -0.5941 REMARK 3 S31: 0.1636 S32: 0.4828 S33: 0.2499 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.3703 27.0640 5.1286 REMARK 3 T TENSOR REMARK 3 T11: 0.2731 T22: 0.1760 REMARK 3 T33: 0.2308 T12: -0.0285 REMARK 3 T13: -0.0088 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.5275 L22: 1.6052 REMARK 3 L33: 2.7299 L12: 0.6746 REMARK 3 L13: 1.4152 L23: 0.9362 REMARK 3 S TENSOR REMARK 3 S11: -0.1607 S12: 0.2214 S13: 0.0118 REMARK 3 S21: -0.1142 S22: 0.1865 S23: -0.0596 REMARK 3 S31: 0.0427 S32: 0.1884 S33: -0.0425 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1877 34.2992 17.8875 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.1090 REMARK 3 T33: 0.1504 T12: -0.0047 REMARK 3 T13: -0.0185 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.1790 L22: 1.7689 REMARK 3 L33: 1.1651 L12: 0.2070 REMARK 3 L13: -0.4558 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0158 S13: -0.0027 REMARK 3 S21: 0.2285 S22: 0.0790 S23: 0.0233 REMARK 3 S31: 0.0484 S32: -0.0915 S33: -0.0742 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.5513 50.8710 21.1257 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.1679 REMARK 3 T33: 0.3149 T12: 0.0407 REMARK 3 T13: 0.0338 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 5.1537 L22: 4.2457 REMARK 3 L33: 3.3865 L12: 4.6491 REMARK 3 L13: -4.0441 L23: -3.7005 REMARK 3 S TENSOR REMARK 3 S11: 0.3108 S12: -0.1433 S13: 0.9573 REMARK 3 S21: 0.5400 S22: 0.0658 S23: 0.6718 REMARK 3 S31: -0.6837 S32: -0.1095 S33: -0.3701 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0056 37.9294 32.3409 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1787 REMARK 3 T33: 0.1425 T12: -0.0067 REMARK 3 T13: -0.0149 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.2956 L22: 7.6157 REMARK 3 L33: 3.6625 L12: 0.1444 REMARK 3 L13: -0.1176 L23: -2.2968 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.2618 S13: 0.0374 REMARK 3 S21: 0.4858 S22: 0.1051 S23: 0.4544 REMARK 3 S31: -0.2608 S32: -0.0360 S33: -0.1043 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.7043 7.1383 21.5148 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.1370 REMARK 3 T33: 0.1951 T12: -0.0234 REMARK 3 T13: 0.0233 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.3855 L22: 4.2302 REMARK 3 L33: 3.0613 L12: 1.7532 REMARK 3 L13: 0.4530 L23: 1.0530 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.1007 S13: -0.2022 REMARK 3 S21: 0.2495 S22: -0.0323 S23: 0.0582 REMARK 3 S31: 0.4182 S32: -0.3173 S33: -0.0015 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.2725 16.1753 15.2738 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.1267 REMARK 3 T33: 0.1789 T12: -0.0574 REMARK 3 T13: -0.0097 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.4413 L22: 1.7100 REMARK 3 L33: 2.9157 L12: -0.5089 REMARK 3 L13: -0.2386 L23: 1.1808 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.0575 S13: -0.0693 REMARK 3 S21: -0.1377 S22: 0.0886 S23: 0.1543 REMARK 3 S31: -0.0205 S32: -0.1000 S33: -0.0035 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.8264 8.0737 6.0643 REMARK 3 T TENSOR REMARK 3 T11: 0.3101 T22: 0.1382 REMARK 3 T33: 0.2129 T12: -0.1022 REMARK 3 T13: -0.0321 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.8166 L22: 3.1714 REMARK 3 L33: 5.9084 L12: -0.2154 REMARK 3 L13: -1.3521 L23: -0.4547 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: 0.3404 S13: -0.2202 REMARK 3 S21: -0.4614 S22: 0.2050 S23: -0.0642 REMARK 3 S31: 0.8971 S32: -0.0684 S33: -0.0461 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.1433 6.8763 9.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.3785 T22: 0.1795 REMARK 3 T33: 0.2254 T12: -0.0694 REMARK 3 T13: -0.0375 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.8726 L22: 1.8688 REMARK 3 L33: 0.7777 L12: -0.7026 REMARK 3 L13: -0.9338 L23: -0.0886 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.3929 S13: -0.3874 REMARK 3 S21: -0.0026 S22: -0.0265 S23: 0.1042 REMARK 3 S31: 0.4903 S32: -0.2964 S33: 0.0604 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9D6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 300 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 19.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM CITRATE TRIBASIC IN 0.1 M REMARK 280 HEPES AT PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.85333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.42667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.42667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.85333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 607 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 12 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 518 O HOH B 543 1.49 REMARK 500 O HOH B 535 O HOH B 538 1.57 REMARK 500 O HOH A 446 O HOH A 491 1.70 REMARK 500 O HOH B 519 O HOH B 532 1.74 REMARK 500 O HOH A 390 O HOH B 309 1.75 REMARK 500 O HOH A 402 O HOH B 308 1.78 REMARK 500 O HOH B 301 O HOH B 530 1.79 REMARK 500 O HOH B 555 O HOH B 618 1.79 REMARK 500 O HOH A 329 O HOH B 520 1.80 REMARK 500 O HOH A 362 O HOH B 444 1.81 REMARK 500 O HOH B 621 O HOH B 650 1.81 REMARK 500 O HOH A 350 O HOH B 521 1.85 REMARK 500 O HOH A 442 O HOH A 483 1.86 REMARK 500 O HOH A 459 O HOH A 488 1.87 REMARK 500 O HOH B 486 O HOH B 490 1.91 REMARK 500 OG SER A 112 O HOH A 301 1.91 REMARK 500 O HOH A 554 O HOH A 579 1.92 REMARK 500 O HOH B 419 O HOH B 560 1.92 REMARK 500 O HOH B 430 O HOH B 539 1.93 REMARK 500 O HOH B 589 O HOH B 636 1.95 REMARK 500 O HOH A 552 O HOH A 572 1.97 REMARK 500 O HOH B 606 O HOH B 641 1.98 REMARK 500 O HOH A 537 O HOH B 558 1.99 REMARK 500 O HOH A 487 O HOH A 545 2.01 REMARK 500 O HOH B 622 O HOH B 663 2.01 REMARK 500 O HOH A 478 O HOH A 547 2.01 REMARK 500 O HOH A 306 O HOH A 495 2.03 REMARK 500 O HOH A 459 O HOH A 525 2.06 REMARK 500 OE1 GLU B 108 O HOH B 301 2.06 REMARK 500 O HOH A 377 O HOH A 459 2.07 REMARK 500 O HOH A 344 O HOH A 547 2.08 REMARK 500 NZ LYS A 8 O HOH A 302 2.08 REMARK 500 O HOH A 316 O HOH B 569 2.08 REMARK 500 O HOH B 681 O HOH B 685 2.08 REMARK 500 O HOH A 454 O HOH A 529 2.08 REMARK 500 O HOH A 525 O HOH A 580 2.09 REMARK 500 O HOH A 388 O HOH A 518 2.09 REMARK 500 O HOH B 626 O HOH B 649 2.09 REMARK 500 O HOH B 549 O HOH B 667 2.10 REMARK 500 O HOH B 664 O HOH B 684 2.11 REMARK 500 O HOH A 531 O HOH B 551 2.12 REMARK 500 O HOH B 306 O HOH B 604 2.12 REMARK 500 OE2 GLU A 78 O HOH A 303 2.13 REMARK 500 O HOH B 382 O HOH B 519 2.13 REMARK 500 OE2 GLU B 132 O HOH B 302 2.13 REMARK 500 O THR B 228 O HOH B 303 2.13 REMARK 500 O HOH B 503 O HOH B 667 2.14 REMARK 500 O HOH B 342 O HOH B 558 2.14 REMARK 500 O GLU A 150 O HOH A 304 2.14 REMARK 500 NZ LYS A 81 O HOH A 303 2.14 REMARK 500 REMARK 500 THIS ENTRY HAS 65 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 566 O HOH B 634 1665 2.13 REMARK 500 O HOH A 573 O HOH B 627 4465 2.15 REMARK 500 O HOH B 315 O HOH B 523 5665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 113 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 111 -143.19 -140.75 REMARK 500 CYS A 111 32.74 -164.37 REMARK 500 SER A 162 96.01 -69.85 REMARK 500 ASN B 2 47.23 -94.25 REMARK 500 LYS B 157 56.07 -117.02 REMARK 500 ARG B 158 72.02 -118.43 REMARK 500 CYS B 189 58.46 39.45 REMARK 500 GLU B 207 8.94 -68.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 686 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 687 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 688 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 689 DISTANCE = 6.90 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9D6K RELATED DB: PDB REMARK 900 RELATED ID: 9D6J RELATED DB: PDB REMARK 900 RELATED ID: 9D65 RELATED DB: PDB DBREF 9D6M A 1 204 UNP Q7SID2 NHAA_PSETH 1 204 DBREF 9D6M B 1 228 UNP Q7SID3 NHAB_PSETH 1 228 SEQADV 9D6M LYS B 157 UNP Q7SID3 ARG 157 ENGINEERED MUTATION SEQRES 1 A 204 MET THR GLU ASN ILE LEU ARG LYS SER ASP GLU GLU ILE SEQRES 2 A 204 GLN LYS GLU ILE THR ALA ARG VAL LYS ALA LEU GLU SER SEQRES 3 A 204 MET LEU ILE GLU GLN GLY ILE LEU THR THR SER MET ILE SEQRES 4 A 204 ASP ARG MET ALA GLU ILE TYR GLU ASN GLU VAL GLY PRO SEQRES 5 A 204 HIS LEU GLY ALA LYS VAL VAL VAL LYS ALA TRP THR ASP SEQRES 6 A 204 PRO GLU PHE LYS LYS ARG LEU LEU ALA ASP GLY THR GLU SEQRES 7 A 204 ALA CYS LYS GLU LEU GLY ILE GLY GLY LEU GLN GLY GLU SEQRES 8 A 204 ASP MET MET TRP VAL GLU ASN THR ASP GLU VAL HIS HIS SEQRES 9 A 204 VAL VAL VAL CYS THR LEU CYS SER CYS TYR PRO TRP PRO SEQRES 10 A 204 VAL LEU GLY LEU PRO PRO ASN TRP PHE LYS GLU PRO GLN SEQRES 11 A 204 TYR ARG SER ARG VAL VAL ARG GLU PRO ARG GLN LEU LEU SEQRES 12 A 204 LYS GLU GLU PHE GLY PHE GLU VAL PRO PRO SER LYS GLU SEQRES 13 A 204 ILE LYS VAL TRP ASP SER SER SER GLU MET ARG PHE VAL SEQRES 14 A 204 VAL LEU PRO GLN ARG PRO ALA GLY THR ASP GLY TRP SER SEQRES 15 A 204 GLU GLU GLU LEU ALA THR LEU VAL THR ARG GLU SER MET SEQRES 16 A 204 ILE GLY VAL GLU PRO ALA LYS ALA VAL SEQRES 1 B 228 MET ASN GLY VAL TYR ASP VAL GLY GLY THR ASP GLY LEU SEQRES 2 B 228 GLY PRO ILE ASN ARG PRO ALA ASP GLU PRO VAL PHE ARG SEQRES 3 B 228 ALA GLU TRP GLU LYS VAL ALA PHE ALA MET PHE PRO ALA SEQRES 4 B 228 THR PHE ARG ALA GLY PHE MET GLY LEU ASP GLU PHE ARG SEQRES 5 B 228 PHE GLY ILE GLU GLN MET ASN PRO ALA GLU TYR LEU GLU SEQRES 6 B 228 SER PRO TYR TYR TRP HIS TRP ILE ARG THR TYR ILE HIS SEQRES 7 B 228 HIS GLY VAL ARG THR GLY LYS ILE ASP LEU GLU GLU LEU SEQRES 8 B 228 GLU ARG ARG THR GLN TYR TYR ARG GLU ASN PRO ASP ALA SEQRES 9 B 228 PRO LEU PRO GLU HIS GLU GLN LYS PRO GLU LEU ILE GLU SEQRES 10 B 228 PHE VAL ASN GLN ALA VAL TYR GLY GLY LEU PRO ALA SER SEQRES 11 B 228 ARG GLU VAL ASP ARG PRO PRO LYS PHE LYS GLU GLY ASP SEQRES 12 B 228 VAL VAL ARG PHE SER THR ALA SER PRO LYS GLY HIS ALA SEQRES 13 B 228 LYS ARG ALA ARG TYR VAL ARG GLY LYS THR GLY THR VAL SEQRES 14 B 228 VAL LYS HIS HIS GLY ALA TYR ILE TYR PRO ASP THR ALA SEQRES 15 B 228 GLY ASN GLY LEU GLY GLU CYS PRO GLU HIS LEU TYR THR SEQRES 16 B 228 VAL ARG PHE THR ALA GLN GLU LEU TRP GLY PRO GLU GLY SEQRES 17 B 228 ASP PRO ASN SER SER VAL TYR TYR ASP CYS TRP GLU PRO SEQRES 18 B 228 TYR ILE GLU LEU VAL ASP THR FORMUL 3 HOH *670(H2 O) HELIX 1 AA1 SER A 9 GLN A 31 1 23 HELIX 2 AA2 THR A 35 GLU A 49 1 15 HELIX 3 AA3 GLY A 51 ASP A 65 1 15 HELIX 4 AA4 ASP A 65 ASP A 75 1 11 HELIX 5 AA5 ASP A 75 LEU A 83 1 9 HELIX 6 AA6 PRO A 115 GLY A 120 1 6 HELIX 7 AA7 PRO A 123 GLU A 128 1 6 HELIX 8 AA8 GLU A 128 VAL A 136 1 9 HELIX 9 AA9 GLU A 138 GLY A 148 1 11 HELIX 10 AB1 SER A 182 THR A 188 1 7 HELIX 11 AB2 THR A 191 GLY A 197 1 7 HELIX 12 AB3 ALA B 27 ALA B 43 1 17 HELIX 13 AB4 GLY B 47 GLN B 57 1 11 HELIX 14 AB5 ASN B 59 SER B 66 1 8 HELIX 15 AB6 PRO B 67 THR B 83 1 17 HELIX 16 AB7 ASP B 87 ASN B 101 1 15 HELIX 17 AB8 LYS B 112 GLY B 126 1 15 HELIX 18 AB9 ALA B 159 ARG B 163 5 5 HELIX 19 AC1 TYR B 178 GLY B 183 1 6 HELIX 20 AC2 ALA B 200 GLY B 205 1 6 HELIX 21 AC3 PRO B 206 GLY B 208 5 3 SHEET 1 AA1 2 MET A 93 GLU A 97 0 SHEET 2 AA1 2 ARG A 167 LEU A 171 1 O LEU A 171 N VAL A 96 SHEET 1 AA2 6 VAL A 102 VAL A 107 0 SHEET 2 AA2 6 GLU A 156 ASP A 161 1 O LYS A 158 N HIS A 103 SHEET 3 AA2 6 SER B 212 TRP B 219 1 O TYR B 215 N VAL A 159 SHEET 4 AA2 6 GLU B 191 THR B 199 -1 N TYR B 194 O CYS B 218 SHEET 5 AA2 6 THR B 166 TYR B 176 -1 N VAL B 170 O THR B 195 SHEET 6 AA2 6 SER B 130 ARG B 131 -1 N ARG B 131 O ALA B 175 SHEET 1 AA3 7 VAL A 102 VAL A 107 0 SHEET 2 AA3 7 GLU A 156 ASP A 161 1 O LYS A 158 N HIS A 103 SHEET 3 AA3 7 SER B 212 TRP B 219 1 O TYR B 215 N VAL A 159 SHEET 4 AA3 7 GLU B 191 THR B 199 -1 N TYR B 194 O CYS B 218 SHEET 5 AA3 7 THR B 166 TYR B 176 -1 N VAL B 170 O THR B 195 SHEET 6 AA3 7 VAL B 144 PHE B 147 -1 N VAL B 145 O GLY B 167 SHEET 7 AA3 7 ILE B 223 ASP B 227 -1 O VAL B 226 N VAL B 144 SSBOND 1 CYS A 108 CYS A 113 1555 1555 2.05 CRYST1 65.910 65.910 184.280 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015172 0.008760 0.000000 0.00000 SCALE2 0.000000 0.017519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005427 0.00000