data_9D9R # _entry.id 9D9R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9D9R pdb_00009d9r 10.2210/pdb9d9r/pdb WWPDB D_1000287274 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-09 ? 2 'Structure model' 1 1 2025-08-27 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9D9R _pdbx_database_status.recvd_initial_deposition_date 2024-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email kovallra@uc.edu _pdbx_contact_author.name_first Rhett _pdbx_contact_author.name_last Kovall _pdbx_contact_author.name_mi A. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0520-1613 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yuan, Z.' 1 0000-0002-2295-4505 'Kovall, R.A.' 2 0000-0003-0520-1613 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 4800 _citation.page_last 4800 _citation.title 'The ALX4 dimer structure provides insight into how disease alleles impact function.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-59728-9 _citation.pdbx_database_id_PubMed 40410151 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cain, B.' 1 0009-0006-1767-3019 primary 'Yuan, Z.' 2 ? primary 'Thoman, E.' 3 ? primary 'Kovall, R.A.' 4 0000-0003-0520-1613 primary 'Gebelein, B.' 5 0000-0001-9791-9061 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Homeobox protein aristaless-like 4' 9689.976 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*CP*TP*AP*AP*TP*TP*CP*AP*AP*TP*TP*AP*AP*CP*G)-3') ; 5170.386 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*GP*TP*TP*AP*AP*TP*TP*GP*AP*AP*TP*TP*AP*GP*CP*G)-3') ; 5241.420 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 water nat water 18.015 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GPAAASNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERWSHPQFEK GPAAASNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERWSHPQFEK A,B ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DT)(DA)(DA)(DT)(DT)(DC)(DA)(DA)(DT)(DT)(DA)(DA)(DC)(DG)' CGCTAATTCAATTAACG C ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DT)(DA)(DA)(DT)(DT)(DG)(DA)(DA)(DT)(DT)(DA)(DG)(DC)(DG)' CGTTAATTGAATTAGCG D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 ALA n 1 4 ALA n 1 5 ALA n 1 6 SER n 1 7 ASN n 1 8 LYS n 1 9 GLY n 1 10 LYS n 1 11 LYS n 1 12 ARG n 1 13 ARG n 1 14 ASN n 1 15 ARG n 1 16 THR n 1 17 THR n 1 18 PHE n 1 19 THR n 1 20 SER n 1 21 TYR n 1 22 GLN n 1 23 LEU n 1 24 GLU n 1 25 GLU n 1 26 LEU n 1 27 GLU n 1 28 LYS n 1 29 VAL n 1 30 PHE n 1 31 GLN n 1 32 LYS n 1 33 THR n 1 34 HIS n 1 35 TYR n 1 36 PRO n 1 37 ASP n 1 38 VAL n 1 39 TYR n 1 40 ALA n 1 41 ARG n 1 42 GLU n 1 43 GLN n 1 44 LEU n 1 45 ALA n 1 46 MET n 1 47 ARG n 1 48 THR n 1 49 ASP n 1 50 LEU n 1 51 THR n 1 52 GLU n 1 53 ALA n 1 54 ARG n 1 55 VAL n 1 56 GLN n 1 57 VAL n 1 58 TRP n 1 59 PHE n 1 60 GLN n 1 61 ASN n 1 62 ARG n 1 63 ARG n 1 64 ALA n 1 65 LYS n 1 66 TRP n 1 67 ARG n 1 68 LYS n 1 69 ARG n 1 70 GLU n 1 71 ARG n 1 72 TRP n 1 73 SER n 1 74 HIS n 1 75 PRO n 1 76 GLN n 1 77 PHE n 1 78 GLU n 1 79 LYS n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DT n 2 5 DA n 2 6 DA n 2 7 DT n 2 8 DT n 2 9 DC n 2 10 DA n 2 11 DA n 2 12 DT n 2 13 DT n 2 14 DA n 2 15 DA n 2 16 DC n 2 17 DG n 3 1 DC n 3 2 DG n 3 3 DT n 3 4 DT n 3 5 DA n 3 6 DA n 3 7 DT n 3 8 DT n 3 9 DG n 3 10 DA n 3 11 DA n 3 12 DT n 3 13 DT n 3 14 DA n 3 15 DG n 3 16 DC n 3 17 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 79 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ALX4, KIAA1788' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 17 'Homo sapiens' human 9606 ? 3 1 sample 1 17 'Homo sapiens' human 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 204 ? ? ? A . n A 1 2 PRO 2 205 ? ? ? A . n A 1 3 ALA 3 206 ? ? ? A . n A 1 4 ALA 4 207 ? ? ? A . n A 1 5 ALA 5 208 ? ? ? A . n A 1 6 SER 6 209 ? ? ? A . n A 1 7 ASN 7 210 210 ASN ASN A . n A 1 8 LYS 8 211 211 LYS LYS A . n A 1 9 GLY 9 212 212 GLY GLY A . n A 1 10 LYS 10 213 213 LYS LYS A . n A 1 11 LYS 11 214 214 LYS LYS A . n A 1 12 ARG 12 215 215 ARG ARG A . n A 1 13 ARG 13 216 216 ARG ARG A . n A 1 14 ASN 14 217 217 ASN ASN A . n A 1 15 ARG 15 218 218 ARG ARG A . n A 1 16 THR 16 219 219 THR THR A . n A 1 17 THR 17 220 220 THR THR A . n A 1 18 PHE 18 221 221 PHE PHE A . n A 1 19 THR 19 222 222 THR THR A . n A 1 20 SER 20 223 223 SER SER A . n A 1 21 TYR 21 224 224 TYR TYR A . n A 1 22 GLN 22 225 225 GLN GLN A . n A 1 23 LEU 23 226 226 LEU LEU A . n A 1 24 GLU 24 227 227 GLU GLU A . n A 1 25 GLU 25 228 228 GLU GLU A . n A 1 26 LEU 26 229 229 LEU LEU A . n A 1 27 GLU 27 230 230 GLU GLU A . n A 1 28 LYS 28 231 231 LYS LYS A . n A 1 29 VAL 29 232 232 VAL VAL A . n A 1 30 PHE 30 233 233 PHE PHE A . n A 1 31 GLN 31 234 234 GLN GLN A . n A 1 32 LYS 32 235 235 LYS LYS A . n A 1 33 THR 33 236 236 THR THR A . n A 1 34 HIS 34 237 237 HIS HIS A . n A 1 35 TYR 35 238 238 TYR TYR A . n A 1 36 PRO 36 239 239 PRO PRO A . n A 1 37 ASP 37 240 240 ASP ASP A . n A 1 38 VAL 38 241 241 VAL VAL A . n A 1 39 TYR 39 242 242 TYR TYR A . n A 1 40 ALA 40 243 243 ALA ALA A . n A 1 41 ARG 41 244 244 ARG ARG A . n A 1 42 GLU 42 245 245 GLU GLU A . n A 1 43 GLN 43 246 246 GLN GLN A . n A 1 44 LEU 44 247 247 LEU LEU A . n A 1 45 ALA 45 248 248 ALA ALA A . n A 1 46 MET 46 249 249 MET MET A . n A 1 47 ARG 47 250 250 ARG ARG A . n A 1 48 THR 48 251 251 THR THR A . n A 1 49 ASP 49 252 252 ASP ASP A . n A 1 50 LEU 50 253 253 LEU LEU A . n A 1 51 THR 51 254 254 THR THR A . n A 1 52 GLU 52 255 255 GLU GLU A . n A 1 53 ALA 53 256 256 ALA ALA A . n A 1 54 ARG 54 257 257 ARG ARG A . n A 1 55 VAL 55 258 258 VAL VAL A . n A 1 56 GLN 56 259 259 GLN GLN A . n A 1 57 VAL 57 260 260 VAL VAL A . n A 1 58 TRP 58 261 261 TRP TRP A . n A 1 59 PHE 59 262 262 PHE PHE A . n A 1 60 GLN 60 263 263 GLN GLN A . n A 1 61 ASN 61 264 264 ASN ASN A . n A 1 62 ARG 62 265 265 ARG ARG A . n A 1 63 ARG 63 266 266 ARG ARG A . n A 1 64 ALA 64 267 267 ALA ALA A . n A 1 65 LYS 65 268 268 LYS LYS A . n A 1 66 TRP 66 269 269 TRP TRP A . n A 1 67 ARG 67 270 270 ARG ARG A . n A 1 68 LYS 68 271 271 LYS LYS A . n A 1 69 ARG 69 272 272 ARG ARG A . n A 1 70 GLU 70 273 273 GLU GLU A . n A 1 71 ARG 71 274 274 ARG ARG A . n A 1 72 TRP 72 275 275 TRP TRP A . n A 1 73 SER 73 276 276 SER SER A . n A 1 74 HIS 74 277 277 HIS HIS A . n A 1 75 PRO 75 278 ? ? ? A . n A 1 76 GLN 76 279 ? ? ? A . n A 1 77 PHE 77 280 ? ? ? A . n A 1 78 GLU 78 281 ? ? ? A . n A 1 79 LYS 79 282 ? ? ? A . n B 1 1 GLY 1 204 ? ? ? B . n B 1 2 PRO 2 205 ? ? ? B . n B 1 3 ALA 3 206 ? ? ? B . n B 1 4 ALA 4 207 ? ? ? B . n B 1 5 ALA 5 208 ? ? ? B . n B 1 6 SER 6 209 ? ? ? B . n B 1 7 ASN 7 210 ? ? ? B . n B 1 8 LYS 8 211 ? ? ? B . n B 1 9 GLY 9 212 ? ? ? B . n B 1 10 LYS 10 213 213 LYS LYS B . n B 1 11 LYS 11 214 214 LYS LYS B . n B 1 12 ARG 12 215 215 ARG ARG B . n B 1 13 ARG 13 216 216 ARG ARG B . n B 1 14 ASN 14 217 217 ASN ASN B . n B 1 15 ARG 15 218 218 ARG ARG B . n B 1 16 THR 16 219 219 THR THR B . n B 1 17 THR 17 220 220 THR THR B . n B 1 18 PHE 18 221 221 PHE PHE B . n B 1 19 THR 19 222 222 THR THR B . n B 1 20 SER 20 223 223 SER SER B . n B 1 21 TYR 21 224 224 TYR TYR B . n B 1 22 GLN 22 225 225 GLN GLN B . n B 1 23 LEU 23 226 226 LEU LEU B . n B 1 24 GLU 24 227 227 GLU GLU B . n B 1 25 GLU 25 228 228 GLU GLU B . n B 1 26 LEU 26 229 229 LEU LEU B . n B 1 27 GLU 27 230 230 GLU GLU B . n B 1 28 LYS 28 231 231 LYS LYS B . n B 1 29 VAL 29 232 232 VAL VAL B . n B 1 30 PHE 30 233 233 PHE PHE B . n B 1 31 GLN 31 234 234 GLN GLN B . n B 1 32 LYS 32 235 235 LYS LYS B . n B 1 33 THR 33 236 236 THR THR B . n B 1 34 HIS 34 237 237 HIS HIS B . n B 1 35 TYR 35 238 238 TYR TYR B . n B 1 36 PRO 36 239 239 PRO PRO B . n B 1 37 ASP 37 240 240 ASP ASP B . n B 1 38 VAL 38 241 241 VAL VAL B . n B 1 39 TYR 39 242 242 TYR TYR B . n B 1 40 ALA 40 243 243 ALA ALA B . n B 1 41 ARG 41 244 244 ARG ARG B . n B 1 42 GLU 42 245 245 GLU GLU B . n B 1 43 GLN 43 246 246 GLN GLN B . n B 1 44 LEU 44 247 247 LEU LEU B . n B 1 45 ALA 45 248 248 ALA ALA B . n B 1 46 MET 46 249 249 MET MET B . n B 1 47 ARG 47 250 250 ARG ARG B . n B 1 48 THR 48 251 251 THR THR B . n B 1 49 ASP 49 252 252 ASP ASP B . n B 1 50 LEU 50 253 253 LEU LEU B . n B 1 51 THR 51 254 254 THR THR B . n B 1 52 GLU 52 255 255 GLU GLU B . n B 1 53 ALA 53 256 256 ALA ALA B . n B 1 54 ARG 54 257 257 ARG ARG B . n B 1 55 VAL 55 258 258 VAL VAL B . n B 1 56 GLN 56 259 259 GLN GLN B . n B 1 57 VAL 57 260 260 VAL VAL B . n B 1 58 TRP 58 261 261 TRP TRP B . n B 1 59 PHE 59 262 262 PHE PHE B . n B 1 60 GLN 60 263 263 GLN GLN B . n B 1 61 ASN 61 264 264 ASN ASN B . n B 1 62 ARG 62 265 265 ARG ARG B . n B 1 63 ARG 63 266 266 ARG ARG B . n B 1 64 ALA 64 267 267 ALA ALA B . n B 1 65 LYS 65 268 268 LYS LYS B . n B 1 66 TRP 66 269 269 TRP TRP B . n B 1 67 ARG 67 270 270 ARG ARG B . n B 1 68 LYS 68 271 271 LYS LYS B . n B 1 69 ARG 69 272 272 ARG ARG B . n B 1 70 GLU 70 273 273 GLU GLU B . n B 1 71 ARG 71 274 274 ARG ARG B . n B 1 72 TRP 72 275 275 TRP TRP B . n B 1 73 SER 73 276 276 SER SER B . n B 1 74 HIS 74 277 277 HIS HIS B . n B 1 75 PRO 75 278 278 PRO PRO B . n B 1 76 GLN 76 279 ? ? ? B . n B 1 77 PHE 77 280 ? ? ? B . n B 1 78 GLU 78 281 ? ? ? B . n B 1 79 LYS 79 282 ? ? ? B . n C 2 1 DC 1 1 1 DC DC C . n C 2 2 DG 2 2 2 DG DG C . n C 2 3 DC 3 3 3 DC DC C . n C 2 4 DT 4 4 4 DT DT C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DT 7 7 7 DT DT C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DC 9 9 9 DC DC C . n C 2 10 DA 10 10 10 DA DA C . n C 2 11 DA 11 11 11 DA DA C . n C 2 12 DT 12 12 12 DT DT C . n C 2 13 DT 13 13 13 DT DT C . n C 2 14 DA 14 14 14 DA DA C . n C 2 15 DA 15 15 15 DA DA C . n C 2 16 DC 16 16 16 DC DC C . n C 2 17 DG 17 17 17 DG DG C . n D 3 1 DC 1 18 18 DC DC D . n D 3 2 DG 2 19 19 DG DG D . n D 3 3 DT 3 20 20 DT DT D . n D 3 4 DT 4 21 21 DT DT D . n D 3 5 DA 5 22 22 DA DA D . n D 3 6 DA 6 23 23 DA DA D . n D 3 7 DT 7 24 24 DT DT D . n D 3 8 DT 8 25 25 DT DT D . n D 3 9 DG 9 26 26 DG DG D . n D 3 10 DA 10 27 27 DA DA D . n D 3 11 DA 11 28 28 DA DA D . n D 3 12 DT 12 29 29 DT DT D . n D 3 13 DT 13 30 30 DT DT D . n D 3 14 DA 14 31 31 DA DA D . n D 3 15 DG 15 32 32 DG DG D . n D 3 16 DC 16 33 33 DC DC D . n D 3 17 DG 17 34 34 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 EDO 1 301 1 EDO EDO A . F 4 EDO 1 301 2 EDO EDO B . G 5 HOH 1 401 4 HOH HOH A . H 5 HOH 1 101 2 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 210 ? CG ? A ASN 7 CG 2 1 Y 1 A ASN 210 ? OD1 ? A ASN 7 OD1 3 1 Y 1 A ASN 210 ? ND2 ? A ASN 7 ND2 4 1 Y 1 A GLU 227 ? CG ? A GLU 24 CG 5 1 Y 1 A GLU 227 ? CD ? A GLU 24 CD 6 1 Y 1 A GLU 227 ? OE1 ? A GLU 24 OE1 7 1 Y 1 A GLU 227 ? OE2 ? A GLU 24 OE2 8 1 Y 1 B LYS 213 ? CG ? B LYS 10 CG 9 1 Y 1 B LYS 213 ? CD ? B LYS 10 CD 10 1 Y 1 B LYS 213 ? CE ? B LYS 10 CE 11 1 Y 1 B LYS 213 ? NZ ? B LYS 10 NZ 12 1 Y 1 B LYS 214 ? CG ? B LYS 11 CG 13 1 Y 1 B LYS 214 ? CD ? B LYS 11 CD 14 1 Y 1 B LYS 214 ? CE ? B LYS 11 CE 15 1 Y 1 B LYS 214 ? NZ ? B LYS 11 NZ 16 1 Y 1 B LYS 271 ? O ? B LYS 68 O 17 1 Y 1 B LYS 271 ? CG ? B LYS 68 CG 18 1 Y 1 B LYS 271 ? CD ? B LYS 68 CD 19 1 Y 1 B LYS 271 ? CE ? B LYS 68 CE 20 1 Y 1 B LYS 271 ? NZ ? B LYS 68 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? '2.10.4 (23-JAN-2024)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? pointless ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 9D9R _cell.details ? _cell.formula_units_Z ? _cell.length_a 70.460 _cell.length_a_esd ? _cell.length_b 70.460 _cell.length_b_esd ? _cell.length_c 159.141 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9D9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9D9R _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.83 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Tris pH 7.5, 0.2M Trimethylamine N-oxide, 20% PEG MME 2000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 277 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9D9R _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.389 _reflns.d_resolution_low 79.57 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18846 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.01 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.158 _reflns.pdbx_Rpim_I_all 0.050 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.987 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.150 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.39 _reflns_shell.d_res_low 2.48 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all 18662 _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1933 _reflns_shell.percent_possible_obs 100.0 _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.7 _reflns_shell.pdbx_chi_squared 1.10 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs 0.6 _reflns_shell.pdbx_Rrim_I_all 3.657 _reflns_shell.pdbx_Rpim_I_all 1.169 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.638 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 3.460 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -22.85250 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][2] -22.85250 _refine.aniso_B[2][3] 0.00000 _refine.aniso_B[3][3] 45.70500 _refine.B_iso_max ? _refine.B_iso_mean 122.78 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.898 _refine.correlation_coeff_Fo_to_Fc_free 0.878 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9D9R _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.389 _refine.ls_d_res_low 32.21 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18810 _refine.ls_number_reflns_R_free 961 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9 _refine.ls_percent_reflns_R_free 5.110 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2149 _refine.ls_R_factor_R_free 0.2388 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2136 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.179 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.180 _refine.pdbx_overall_SU_R_Blow_DPI 0.210 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.207 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 9D9R _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.43 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.389 _refine_hist.d_res_low 32.21 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1881 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1180 _refine_hist.pdbx_number_atoms_nucleic_acid 691 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1989 ? t_bond_d 2.00 HARMONIC 'X-RAY DIFFRACTION' ? 0.82 ? 2819 ? t_angle_deg 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 617 ? t_dihedral_angle_d 2.00 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 238 ? t_gen_planes 5.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1215 ? t_it 10.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? 2.67 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 21.43 ? ? ? t_other_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 247 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 1143 ? t_ideal_dist_contact 4.00 SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.39 _refine_ls_shell.d_res_low 2.41 _refine_ls_shell.number_reflns_all 392 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_R_work 381 _refine_ls_shell.percent_reflns_obs 98.72 _refine_ls_shell.percent_reflns_R_free 2.81 _refine_ls_shell.R_factor_all 0.3805 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3774 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 49 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.4973 # _struct.entry_id 9D9R _struct.title 'X-ray structure of ALX4 homeodomain dimer bound to DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9D9R _struct_keywords.text 'ALX4, paired-like homeodomain, transcription factor, TRANSCRIPTION, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP ALX4_HUMAN Q9H161 ? 1 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 209 2 PDB 9D9R 9D9R ? 2 ? 1 3 PDB 9D9R 9D9R ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9D9R A 6 ? 71 ? Q9H161 209 ? 274 ? 209 274 2 1 9D9R B 6 ? 71 ? Q9H161 209 ? 274 ? 209 274 3 2 9D9R C 1 ? 17 ? 9D9R 1 ? 17 ? 1 17 4 3 9D9R D 1 ? 17 ? 9D9R 18 ? 34 ? 18 34 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9D9R GLY A 1 ? UNP Q9H161 ? ? 'expression tag' 204 1 1 9D9R PRO A 2 ? UNP Q9H161 ? ? 'expression tag' 205 2 1 9D9R ALA A 3 ? UNP Q9H161 ? ? 'expression tag' 206 3 1 9D9R ALA A 4 ? UNP Q9H161 ? ? 'expression tag' 207 4 1 9D9R ALA A 5 ? UNP Q9H161 ? ? 'expression tag' 208 5 1 9D9R TRP A 72 ? UNP Q9H161 ? ? 'expression tag' 275 6 1 9D9R SER A 73 ? UNP Q9H161 ? ? 'expression tag' 276 7 1 9D9R HIS A 74 ? UNP Q9H161 ? ? 'expression tag' 277 8 1 9D9R PRO A 75 ? UNP Q9H161 ? ? 'expression tag' 278 9 1 9D9R GLN A 76 ? UNP Q9H161 ? ? 'expression tag' 279 10 1 9D9R PHE A 77 ? UNP Q9H161 ? ? 'expression tag' 280 11 1 9D9R GLU A 78 ? UNP Q9H161 ? ? 'expression tag' 281 12 1 9D9R LYS A 79 ? UNP Q9H161 ? ? 'expression tag' 282 13 2 9D9R GLY B 1 ? UNP Q9H161 ? ? 'expression tag' 204 14 2 9D9R PRO B 2 ? UNP Q9H161 ? ? 'expression tag' 205 15 2 9D9R ALA B 3 ? UNP Q9H161 ? ? 'expression tag' 206 16 2 9D9R ALA B 4 ? UNP Q9H161 ? ? 'expression tag' 207 17 2 9D9R ALA B 5 ? UNP Q9H161 ? ? 'expression tag' 208 18 2 9D9R TRP B 72 ? UNP Q9H161 ? ? 'expression tag' 275 19 2 9D9R SER B 73 ? UNP Q9H161 ? ? 'expression tag' 276 20 2 9D9R HIS B 74 ? UNP Q9H161 ? ? 'expression tag' 277 21 2 9D9R PRO B 75 ? UNP Q9H161 ? ? 'expression tag' 278 22 2 9D9R GLN B 76 ? UNP Q9H161 ? ? 'expression tag' 279 23 2 9D9R PHE B 77 ? UNP Q9H161 ? ? 'expression tag' 280 24 2 9D9R GLU B 78 ? UNP Q9H161 ? ? 'expression tag' 281 25 2 9D9R LYS B 79 ? UNP Q9H161 ? ? 'expression tag' 282 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7130 ? 1 MORE -21 ? 1 'SSA (A^2)' 12650 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details 'EMSA was used to confirm assembly.' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 19 ? THR A 33 ? THR A 222 THR A 236 1 ? 15 HELX_P HELX_P2 AA2 ASP A 37 ? THR A 48 ? ASP A 240 THR A 251 1 ? 12 HELX_P HELX_P3 AA3 THR A 51 ? GLU A 70 ? THR A 254 GLU A 273 1 ? 20 HELX_P HELX_P4 AA4 THR B 19 ? GLN B 31 ? THR B 222 GLN B 234 1 ? 13 HELX_P HELX_P5 AA5 ASP B 37 ? THR B 48 ? ASP B 240 THR B 251 1 ? 12 HELX_P HELX_P6 AA6 THR B 51 ? ARG B 71 ? THR B 254 ARG B 274 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 17 N1 ? ? C DC 1 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 17 O6 ? ? C DC 1 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 17 N2 ? ? C DC 1 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 16 N3 ? ? C DG 2 D DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 16 O2 ? ? C DG 2 D DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 16 N4 ? ? C DG 2 D DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 15 N1 ? ? C DC 3 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 15 O6 ? ? C DC 3 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 15 N2 ? ? C DC 3 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 4 D DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 4 D DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 13 N3 ? ? C DA 5 D DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 13 O4 ? ? C DA 5 D DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 6 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 6 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 7 D DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 11 N6 ? ? C DT 7 D DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 8 D DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 8 D DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 9 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 9 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 9 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 10 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 10 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 11 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 11 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 12 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 12 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 13 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 13 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DT 13 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 13 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 14 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 14 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 15 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 15 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DA 15 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 15 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 16 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 16 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 16 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 16 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 16 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 16 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 17 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 17 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 17 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 17 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 17 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 17 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9D9R _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 252 ? ? 57.72 17.43 2 1 SER B 276 ? ? -105.39 49.68 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -39.2387 19.6346 31.9155 0.2470 ? -0.2476 ? 0.0602 ? -0.0131 ? 0.1186 ? -0.4780 ? 18.4810 ? -6.9550 ? -0.4693 ? 15.8280 ? -0.0959 ? 4.9907 ? -0.5454 ? -1.4787 ? -0.6321 ? 1.2588 ? 0.1264 ? 1.4352 ? 1.3844 ? -0.4284 ? 0.4191 ? 2 'X-RAY DIFFRACTION' ? refined -24.5273 6.7992 26.0813 0.8795 ? 0.4026 ? 0.1367 ? -0.3855 ? 0.1207 ? 0.1146 ? 7.2409 ? -9.6312 ? 6.8209 ? 11.6408 ? -5.9934 ? 5.1217 ? -0.5840 ? -0.9793 ? -2.0774 ? 0.6190 ? 0.7938 ? 0.3326 ? 1.7455 ? 0.2422 ? -0.2097 ? 3 'X-RAY DIFFRACTION' ? refined -26.1882 10.6777 16.3761 0.5101 ? 0.0883 ? 0.0586 ? -0.2281 ? -0.1257 ? -0.0190 ? 7.8616 ? -0.1705 ? -2.3118 ? 16.1474 ? -1.9253 ? 10.5486 ? -0.3890 ? 0.4496 ? -1.6130 ? -0.5454 ? 0.2104 ? -0.4717 ? 1.4725 ? 0.7150 ? 0.1786 ? 4 'X-RAY DIFFRACTION' ? refined -26.5625 18.2201 22.3496 0.2554 ? 0.1352 ? 0.0114 ? -0.0434 ? 0.0615 ? -0.1404 ? 5.0533 ? -3.0891 ? -0.9747 ? -4.1787 ? 1.1765 ? 6.1298 ? 0.0915 ? -0.9540 ? -0.4412 ? 0.1951 ? -0.0040 ? -0.4394 ? 1.0768 ? 0.5582 ? -0.0875 ? 5 'X-RAY DIFFRACTION' ? refined -13.1869 26.4945 23.7175 -0.0868 ? 0.1733 ? -0.1474 ? 0.2604 ? -0.1582 ? -0.3060 ? 17.8502 ? 9.8117 ? -3.3431 ? 5.3795 ? 7.5674 ? 16.6309 ? -0.5412 ? 0.5230 ? 0.1124 ? -0.2459 ? 1.9679 ? 0.8931 ? -0.1387 ? 1.6292 ? -1.4267 ? 6 'X-RAY DIFFRACTION' ? refined -42.4143 19.3920 7.0069 0.0016 ? -0.1335 ? -0.1784 ? -0.0469 ? -0.3252 ? -0.4420 ? 23.1103 ? 6.4471 ? 0.0352 ? 8.1144 ? -3.6159 ? 12.1246 ? 0.4320 ? 1.4041 ? -1.8056 ? -1.0635 ? -0.5409 ? 0.1232 ? 0.1979 ? -0.7659 ? 0.1089 ? 7 'X-RAY DIFFRACTION' ? refined -51.5775 24.8290 21.1698 -0.1099 ? -0.1971 ? 0.0392 ? 0.1124 ? -0.0604 ? -0.1817 ? 13.0776 ? 2.5377 ? 0.1641 ? 12.9692 ? 7.7792 ? 5.5763 ? 0.1446 ? -0.2101 ? -0.7937 ? 0.7128 ? -0.5132 ? 0.6544 ? 0.2057 ? -1.5501 ? 0.3686 ? 8 'X-RAY DIFFRACTION' ? refined -48.8634 15.8432 17.1584 0.1673 ? -0.3391 ? -0.0626 ? 0.0838 ? -0.0976 ? 0.1679 ? 11.2654 ? -8.1220 ? -8.7202 ? 16.5769 ? 5.0473 ? 0.0000 ? 0.2633 ? -0.0029 ? -1.3480 ? 0.2879 ? -0.5574 ? 1.1067 ? 1.8920 ? -0.7930 ? 0.2941 ? 9 'X-RAY DIFFRACTION' ? refined -44.2387 29.7402 16.0410 -0.3758 ? 0.0320 ? -0.1707 ? 0.4187 ? -0.0096 ? 0.0619 ? 6.7228 ? -11.0828 ? -8.0115 ? 18.2235 ? 1.0455 ? 9.9954 ? 0.7003 ? 0.1700 ? -0.8980 ? 1.0382 ? -0.4726 ? 0.5292 ? -1.2159 ? 0.8360 ? -0.2276 ? 10 'X-RAY DIFFRACTION' ? refined -46.8333 45.9056 13.5166 0.3809 ? -0.1681 ? -0.0617 ? 0.6728 ? 0.3529 ? 0.8286 ? 25.8968 ? -8.1825 ? -3.9174 ? 15.1812 ? -9.3323 ? 5.0554 ? -0.1409 ? -0.0615 ? 1.8943 ? -0.7647 ? 0.7351 ? -0.0155 ? -0.8695 ? 0.5343 ? -0.5942 ? 11 'X-RAY DIFFRACTION' ? refined -25.2634 21.4447 38.8985 0.2433 ? 0.0278 ? -0.1199 ? 0.6052 ? 0.2066 ? -0.4910 ? 16.9369 ? -0.1767 ? -6.4993 ? 16.3249 ? -0.3917 ? 22.6511 ? 0.8941 ? -0.9933 ? -0.3833 ? 1.0082 ? -0.1687 ? -1.9009 ? -1.2877 ? 1.1419 ? -0.7255 ? 12 'X-RAY DIFFRACTION' ? refined -35.1082 23.2948 27.3659 0.3012 ? -0.0348 ? -0.0656 ? -0.0496 ? 0.0392 ? -0.3176 ? 5.1110 ? -7.7333 ? -0.1607 ? 22.6285 ? -6.7530 ? 11.3962 ? -0.0578 ? -0.6186 ? -0.1702 ? 0.5639 ? -0.0982 ? 0.2452 ? 0.3121 ? 0.0940 ? 0.1561 ? 13 'X-RAY DIFFRACTION' ? refined -33.3223 34.4231 15.4038 -0.0023 ? -0.1147 ? 0.0045 ? 0.1300 ? 0.0828 ? -0.3287 ? 22.9880 ? -2.6852 ? -11.5210 ? 19.3672 ? 2.4926 ? 24.9463 ? 0.7384 ? 0.4431 ? 1.6892 ? -1.7339 ? 0.2268 ? 0.1180 ? 0.3961 ? -0.4929 ? -0.9653 ? 14 'X-RAY DIFFRACTION' ? refined -34.9639 24.4402 1.1433 0.2504 ? -0.1514 ? -0.0351 ? 0.5029 ? -0.1770 ? -0.4796 ? 19.0933 ? -1.8430 ? 5.0489 ? 8.0615 ? -2.7577 ? 2.5812 ? -0.1056 ? -0.0142 ? -1.0677 ? -1.6601 ? 0.2525 ? -0.6496 ? 0.3233 ? -0.3418 ? -0.1470 ? 15 'X-RAY DIFFRACTION' ? refined -39.4277 30.8918 -1.0294 0.4537 ? 0.0925 ? -0.1815 ? 0.3361 ? -0.0866 ? -0.4976 ? 21.0935 ? -2.5765 ? -9.0364 ? 12.1683 ? -1.8109 ? 18.3206 ? -0.3391 ? 1.3099 ? 1.5434 ? -0.8035 ? 0.6989 ? 0.5922 ? -1.8392 ? 0.2676 ? -0.3598 ? 16 'X-RAY DIFFRACTION' ? refined -34.4386 24.9323 11.7791 0.0889 ? -0.1932 ? -0.0932 ? 0.1725 ? 0.0060 ? -0.4031 ? 20.8424 ? 8.2496 ? 7.4480 ? 8.6807 ? 4.5622 ? 23.2736 ? -0.8107 ? 0.6016 ? -0.6126 ? -0.5056 ? 0.0671 ? -0.0200 ? -0.8892 ? -0.1697 ? 0.7437 ? 17 'X-RAY DIFFRACTION' ? refined -29.6444 30.6136 26.5229 0.0545 ? -0.0507 ? -0.1071 ? 0.1283 ? 0.0219 ? -0.3153 ? 18.6057 ? -1.7674 ? -11.5677 ? 12.5256 ? 2.5734 ? 16.7931 ? 0.3777 ? -0.4977 ? 0.9908 ? 1.2129 ? 0.5008 ? -0.4730 ? 0.5303 ? 0.7405 ? -0.8785 ? 18 'X-RAY DIFFRACTION' ? refined -33.4802 19.0445 39.5087 0.5788 ? -0.0840 ? -0.0544 ? 0.2677 ? 0.1432 ? -0.4374 ? 21.0067 ? -6.2048 ? 6.8861 ? 8.0076 ? -6.1063 ? 10.1912 ? 0.6793 ? -0.5946 ? -1.0799 ? 1.7004 ? -0.6708 ? 1.1398 ? 1.8838 ? 0.0027 ? -0.0086 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? '{A|210 - 221}' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? '{A|222 - 230}' 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? '{A|231 - 254}' 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? '{A|255 - 269}' 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? '{A|270 - 277}' 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? '{B|213 - 226}' 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ? ? '{B|227 - 246}' 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ? ? '{B|247 - 256}' 9 'X-RAY DIFFRACTION' 9 ? ? ? ? ? ? ? ? ? ? ? '{B|257 - 271}' 10 'X-RAY DIFFRACTION' 10 ? ? ? ? ? ? ? ? ? ? ? '{B|272 - 278}' 11 'X-RAY DIFFRACTION' 11 ? ? ? ? ? ? ? ? ? ? ? '{C|1 - 4}' 12 'X-RAY DIFFRACTION' 12 ? ? ? ? ? ? ? ? ? ? ? '{C|5 - 8}' 13 'X-RAY DIFFRACTION' 13 ? ? ? ? ? ? ? ? ? ? ? '{C|9 - 12}' 14 'X-RAY DIFFRACTION' 14 ? ? ? ? ? ? ? ? ? ? ? '{C|13 - 17}' 15 'X-RAY DIFFRACTION' 15 ? ? ? ? ? ? ? ? ? ? ? '{D|18 - 21}' 16 'X-RAY DIFFRACTION' 16 ? ? ? ? ? ? ? ? ? ? ? '{D|22 - 25}' 17 'X-RAY DIFFRACTION' 17 ? ? ? ? ? ? ? ? ? ? ? '{D|26 - 30}' 18 'X-RAY DIFFRACTION' 18 ? ? ? ? ? ? ? ? ? ? ? '{D|31 - 34}' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 204 ? A GLY 1 2 1 Y 1 A PRO 205 ? A PRO 2 3 1 Y 1 A ALA 206 ? A ALA 3 4 1 Y 1 A ALA 207 ? A ALA 4 5 1 Y 1 A ALA 208 ? A ALA 5 6 1 Y 1 A SER 209 ? A SER 6 7 1 Y 1 A PRO 278 ? A PRO 75 8 1 Y 1 A GLN 279 ? A GLN 76 9 1 Y 1 A PHE 280 ? A PHE 77 10 1 Y 1 A GLU 281 ? A GLU 78 11 1 Y 1 A LYS 282 ? A LYS 79 12 1 Y 1 B GLY 204 ? B GLY 1 13 1 Y 1 B PRO 205 ? B PRO 2 14 1 Y 1 B ALA 206 ? B ALA 3 15 1 Y 1 B ALA 207 ? B ALA 4 16 1 Y 1 B ALA 208 ? B ALA 5 17 1 Y 1 B SER 209 ? B SER 6 18 1 Y 1 B ASN 210 ? B ASN 7 19 1 Y 1 B LYS 211 ? B LYS 8 20 1 Y 1 B GLY 212 ? B GLY 9 21 1 Y 1 B GLN 279 ? B GLN 76 22 1 Y 1 B PHE 280 ? B PHE 77 23 1 Y 1 B GLU 281 ? B GLU 78 24 1 Y 1 B LYS 282 ? B LYS 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 EDO C1 C N N 217 EDO O1 O N N 218 EDO C2 C N N 219 EDO O2 O N N 220 EDO H11 H N N 221 EDO H12 H N N 222 EDO HO1 H N N 223 EDO H21 H N N 224 EDO H22 H N N 225 EDO HO2 H N N 226 GLN N N N N 227 GLN CA C N S 228 GLN C C N N 229 GLN O O N N 230 GLN CB C N N 231 GLN CG C N N 232 GLN CD C N N 233 GLN OE1 O N N 234 GLN NE2 N N N 235 GLN OXT O N N 236 GLN H H N N 237 GLN H2 H N N 238 GLN HA H N N 239 GLN HB2 H N N 240 GLN HB3 H N N 241 GLN HG2 H N N 242 GLN HG3 H N N 243 GLN HE21 H N N 244 GLN HE22 H N N 245 GLN HXT H N N 246 GLU N N N N 247 GLU CA C N S 248 GLU C C N N 249 GLU O O N N 250 GLU CB C N N 251 GLU CG C N N 252 GLU CD C N N 253 GLU OE1 O N N 254 GLU OE2 O N N 255 GLU OXT O N N 256 GLU H H N N 257 GLU H2 H N N 258 GLU HA H N N 259 GLU HB2 H N N 260 GLU HB3 H N N 261 GLU HG2 H N N 262 GLU HG3 H N N 263 GLU HE2 H N N 264 GLU HXT H N N 265 GLY N N N N 266 GLY CA C N N 267 GLY C C N N 268 GLY O O N N 269 GLY OXT O N N 270 GLY H H N N 271 GLY H2 H N N 272 GLY HA2 H N N 273 GLY HA3 H N N 274 GLY HXT H N N 275 HIS N N N N 276 HIS CA C N S 277 HIS C C N N 278 HIS O O N N 279 HIS CB C N N 280 HIS CG C Y N 281 HIS ND1 N Y N 282 HIS CD2 C Y N 283 HIS CE1 C Y N 284 HIS NE2 N Y N 285 HIS OXT O N N 286 HIS H H N N 287 HIS H2 H N N 288 HIS HA H N N 289 HIS HB2 H N N 290 HIS HB3 H N N 291 HIS HD1 H N N 292 HIS HD2 H N N 293 HIS HE1 H N N 294 HIS HE2 H N N 295 HIS HXT H N N 296 HOH O O N N 297 HOH H1 H N N 298 HOH H2 H N N 299 LEU N N N N 300 LEU CA C N S 301 LEU C C N N 302 LEU O O N N 303 LEU CB C N N 304 LEU CG C N N 305 LEU CD1 C N N 306 LEU CD2 C N N 307 LEU OXT O N N 308 LEU H H N N 309 LEU H2 H N N 310 LEU HA H N N 311 LEU HB2 H N N 312 LEU HB3 H N N 313 LEU HG H N N 314 LEU HD11 H N N 315 LEU HD12 H N N 316 LEU HD13 H N N 317 LEU HD21 H N N 318 LEU HD22 H N N 319 LEU HD23 H N N 320 LEU HXT H N N 321 LYS N N N N 322 LYS CA C N S 323 LYS C C N N 324 LYS O O N N 325 LYS CB C N N 326 LYS CG C N N 327 LYS CD C N N 328 LYS CE C N N 329 LYS NZ N N N 330 LYS OXT O N N 331 LYS H H N N 332 LYS H2 H N N 333 LYS HA H N N 334 LYS HB2 H N N 335 LYS HB3 H N N 336 LYS HG2 H N N 337 LYS HG3 H N N 338 LYS HD2 H N N 339 LYS HD3 H N N 340 LYS HE2 H N N 341 LYS HE3 H N N 342 LYS HZ1 H N N 343 LYS HZ2 H N N 344 LYS HZ3 H N N 345 LYS HXT H N N 346 MET N N N N 347 MET CA C N S 348 MET C C N N 349 MET O O N N 350 MET CB C N N 351 MET CG C N N 352 MET SD S N N 353 MET CE C N N 354 MET OXT O N N 355 MET H H N N 356 MET H2 H N N 357 MET HA H N N 358 MET HB2 H N N 359 MET HB3 H N N 360 MET HG2 H N N 361 MET HG3 H N N 362 MET HE1 H N N 363 MET HE2 H N N 364 MET HE3 H N N 365 MET HXT H N N 366 PHE N N N N 367 PHE CA C N S 368 PHE C C N N 369 PHE O O N N 370 PHE CB C N N 371 PHE CG C Y N 372 PHE CD1 C Y N 373 PHE CD2 C Y N 374 PHE CE1 C Y N 375 PHE CE2 C Y N 376 PHE CZ C Y N 377 PHE OXT O N N 378 PHE H H N N 379 PHE H2 H N N 380 PHE HA H N N 381 PHE HB2 H N N 382 PHE HB3 H N N 383 PHE HD1 H N N 384 PHE HD2 H N N 385 PHE HE1 H N N 386 PHE HE2 H N N 387 PHE HZ H N N 388 PHE HXT H N N 389 PRO N N N N 390 PRO CA C N S 391 PRO C C N N 392 PRO O O N N 393 PRO CB C N N 394 PRO CG C N N 395 PRO CD C N N 396 PRO OXT O N N 397 PRO H H N N 398 PRO HA H N N 399 PRO HB2 H N N 400 PRO HB3 H N N 401 PRO HG2 H N N 402 PRO HG3 H N N 403 PRO HD2 H N N 404 PRO HD3 H N N 405 PRO HXT H N N 406 SER N N N N 407 SER CA C N S 408 SER C C N N 409 SER O O N N 410 SER CB C N N 411 SER OG O N N 412 SER OXT O N N 413 SER H H N N 414 SER H2 H N N 415 SER HA H N N 416 SER HB2 H N N 417 SER HB3 H N N 418 SER HG H N N 419 SER HXT H N N 420 THR N N N N 421 THR CA C N S 422 THR C C N N 423 THR O O N N 424 THR CB C N R 425 THR OG1 O N N 426 THR CG2 C N N 427 THR OXT O N N 428 THR H H N N 429 THR H2 H N N 430 THR HA H N N 431 THR HB H N N 432 THR HG1 H N N 433 THR HG21 H N N 434 THR HG22 H N N 435 THR HG23 H N N 436 THR HXT H N N 437 TRP N N N N 438 TRP CA C N S 439 TRP C C N N 440 TRP O O N N 441 TRP CB C N N 442 TRP CG C Y N 443 TRP CD1 C Y N 444 TRP CD2 C Y N 445 TRP NE1 N Y N 446 TRP CE2 C Y N 447 TRP CE3 C Y N 448 TRP CZ2 C Y N 449 TRP CZ3 C Y N 450 TRP CH2 C Y N 451 TRP OXT O N N 452 TRP H H N N 453 TRP H2 H N N 454 TRP HA H N N 455 TRP HB2 H N N 456 TRP HB3 H N N 457 TRP HD1 H N N 458 TRP HE1 H N N 459 TRP HE3 H N N 460 TRP HZ2 H N N 461 TRP HZ3 H N N 462 TRP HH2 H N N 463 TRP HXT H N N 464 TYR N N N N 465 TYR CA C N S 466 TYR C C N N 467 TYR O O N N 468 TYR CB C N N 469 TYR CG C Y N 470 TYR CD1 C Y N 471 TYR CD2 C Y N 472 TYR CE1 C Y N 473 TYR CE2 C Y N 474 TYR CZ C Y N 475 TYR OH O N N 476 TYR OXT O N N 477 TYR H H N N 478 TYR H2 H N N 479 TYR HA H N N 480 TYR HB2 H N N 481 TYR HB3 H N N 482 TYR HD1 H N N 483 TYR HD2 H N N 484 TYR HE1 H N N 485 TYR HE2 H N N 486 TYR HH H N N 487 TYR HXT H N N 488 VAL N N N N 489 VAL CA C N S 490 VAL C C N N 491 VAL O O N N 492 VAL CB C N N 493 VAL CG1 C N N 494 VAL CG2 C N N 495 VAL OXT O N N 496 VAL H H N N 497 VAL H2 H N N 498 VAL HA H N N 499 VAL HB H N N 500 VAL HG11 H N N 501 VAL HG12 H N N 502 VAL HG13 H N N 503 VAL HG21 H N N 504 VAL HG22 H N N 505 VAL HG23 H N N 506 VAL HXT H N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 EDO C1 O1 sing N N 219 EDO C1 C2 sing N N 220 EDO C1 H11 sing N N 221 EDO C1 H12 sing N N 222 EDO O1 HO1 sing N N 223 EDO C2 O2 sing N N 224 EDO C2 H21 sing N N 225 EDO C2 H22 sing N N 226 EDO O2 HO2 sing N N 227 GLN N CA sing N N 228 GLN N H sing N N 229 GLN N H2 sing N N 230 GLN CA C sing N N 231 GLN CA CB sing N N 232 GLN CA HA sing N N 233 GLN C O doub N N 234 GLN C OXT sing N N 235 GLN CB CG sing N N 236 GLN CB HB2 sing N N 237 GLN CB HB3 sing N N 238 GLN CG CD sing N N 239 GLN CG HG2 sing N N 240 GLN CG HG3 sing N N 241 GLN CD OE1 doub N N 242 GLN CD NE2 sing N N 243 GLN NE2 HE21 sing N N 244 GLN NE2 HE22 sing N N 245 GLN OXT HXT sing N N 246 GLU N CA sing N N 247 GLU N H sing N N 248 GLU N H2 sing N N 249 GLU CA C sing N N 250 GLU CA CB sing N N 251 GLU CA HA sing N N 252 GLU C O doub N N 253 GLU C OXT sing N N 254 GLU CB CG sing N N 255 GLU CB HB2 sing N N 256 GLU CB HB3 sing N N 257 GLU CG CD sing N N 258 GLU CG HG2 sing N N 259 GLU CG HG3 sing N N 260 GLU CD OE1 doub N N 261 GLU CD OE2 sing N N 262 GLU OE2 HE2 sing N N 263 GLU OXT HXT sing N N 264 GLY N CA sing N N 265 GLY N H sing N N 266 GLY N H2 sing N N 267 GLY CA C sing N N 268 GLY CA HA2 sing N N 269 GLY CA HA3 sing N N 270 GLY C O doub N N 271 GLY C OXT sing N N 272 GLY OXT HXT sing N N 273 HIS N CA sing N N 274 HIS N H sing N N 275 HIS N H2 sing N N 276 HIS CA C sing N N 277 HIS CA CB sing N N 278 HIS CA HA sing N N 279 HIS C O doub N N 280 HIS C OXT sing N N 281 HIS CB CG sing N N 282 HIS CB HB2 sing N N 283 HIS CB HB3 sing N N 284 HIS CG ND1 sing Y N 285 HIS CG CD2 doub Y N 286 HIS ND1 CE1 doub Y N 287 HIS ND1 HD1 sing N N 288 HIS CD2 NE2 sing Y N 289 HIS CD2 HD2 sing N N 290 HIS CE1 NE2 sing Y N 291 HIS CE1 HE1 sing N N 292 HIS NE2 HE2 sing N N 293 HIS OXT HXT sing N N 294 HOH O H1 sing N N 295 HOH O H2 sing N N 296 LEU N CA sing N N 297 LEU N H sing N N 298 LEU N H2 sing N N 299 LEU CA C sing N N 300 LEU CA CB sing N N 301 LEU CA HA sing N N 302 LEU C O doub N N 303 LEU C OXT sing N N 304 LEU CB CG sing N N 305 LEU CB HB2 sing N N 306 LEU CB HB3 sing N N 307 LEU CG CD1 sing N N 308 LEU CG CD2 sing N N 309 LEU CG HG sing N N 310 LEU CD1 HD11 sing N N 311 LEU CD1 HD12 sing N N 312 LEU CD1 HD13 sing N N 313 LEU CD2 HD21 sing N N 314 LEU CD2 HD22 sing N N 315 LEU CD2 HD23 sing N N 316 LEU OXT HXT sing N N 317 LYS N CA sing N N 318 LYS N H sing N N 319 LYS N H2 sing N N 320 LYS CA C sing N N 321 LYS CA CB sing N N 322 LYS CA HA sing N N 323 LYS C O doub N N 324 LYS C OXT sing N N 325 LYS CB CG sing N N 326 LYS CB HB2 sing N N 327 LYS CB HB3 sing N N 328 LYS CG CD sing N N 329 LYS CG HG2 sing N N 330 LYS CG HG3 sing N N 331 LYS CD CE sing N N 332 LYS CD HD2 sing N N 333 LYS CD HD3 sing N N 334 LYS CE NZ sing N N 335 LYS CE HE2 sing N N 336 LYS CE HE3 sing N N 337 LYS NZ HZ1 sing N N 338 LYS NZ HZ2 sing N N 339 LYS NZ HZ3 sing N N 340 LYS OXT HXT sing N N 341 MET N CA sing N N 342 MET N H sing N N 343 MET N H2 sing N N 344 MET CA C sing N N 345 MET CA CB sing N N 346 MET CA HA sing N N 347 MET C O doub N N 348 MET C OXT sing N N 349 MET CB CG sing N N 350 MET CB HB2 sing N N 351 MET CB HB3 sing N N 352 MET CG SD sing N N 353 MET CG HG2 sing N N 354 MET CG HG3 sing N N 355 MET SD CE sing N N 356 MET CE HE1 sing N N 357 MET CE HE2 sing N N 358 MET CE HE3 sing N N 359 MET OXT HXT sing N N 360 PHE N CA sing N N 361 PHE N H sing N N 362 PHE N H2 sing N N 363 PHE CA C sing N N 364 PHE CA CB sing N N 365 PHE CA HA sing N N 366 PHE C O doub N N 367 PHE C OXT sing N N 368 PHE CB CG sing N N 369 PHE CB HB2 sing N N 370 PHE CB HB3 sing N N 371 PHE CG CD1 doub Y N 372 PHE CG CD2 sing Y N 373 PHE CD1 CE1 sing Y N 374 PHE CD1 HD1 sing N N 375 PHE CD2 CE2 doub Y N 376 PHE CD2 HD2 sing N N 377 PHE CE1 CZ doub Y N 378 PHE CE1 HE1 sing N N 379 PHE CE2 CZ sing Y N 380 PHE CE2 HE2 sing N N 381 PHE CZ HZ sing N N 382 PHE OXT HXT sing N N 383 PRO N CA sing N N 384 PRO N CD sing N N 385 PRO N H sing N N 386 PRO CA C sing N N 387 PRO CA CB sing N N 388 PRO CA HA sing N N 389 PRO C O doub N N 390 PRO C OXT sing N N 391 PRO CB CG sing N N 392 PRO CB HB2 sing N N 393 PRO CB HB3 sing N N 394 PRO CG CD sing N N 395 PRO CG HG2 sing N N 396 PRO CG HG3 sing N N 397 PRO CD HD2 sing N N 398 PRO CD HD3 sing N N 399 PRO OXT HXT sing N N 400 SER N CA sing N N 401 SER N H sing N N 402 SER N H2 sing N N 403 SER CA C sing N N 404 SER CA CB sing N N 405 SER CA HA sing N N 406 SER C O doub N N 407 SER C OXT sing N N 408 SER CB OG sing N N 409 SER CB HB2 sing N N 410 SER CB HB3 sing N N 411 SER OG HG sing N N 412 SER OXT HXT sing N N 413 THR N CA sing N N 414 THR N H sing N N 415 THR N H2 sing N N 416 THR CA C sing N N 417 THR CA CB sing N N 418 THR CA HA sing N N 419 THR C O doub N N 420 THR C OXT sing N N 421 THR CB OG1 sing N N 422 THR CB CG2 sing N N 423 THR CB HB sing N N 424 THR OG1 HG1 sing N N 425 THR CG2 HG21 sing N N 426 THR CG2 HG22 sing N N 427 THR CG2 HG23 sing N N 428 THR OXT HXT sing N N 429 TRP N CA sing N N 430 TRP N H sing N N 431 TRP N H2 sing N N 432 TRP CA C sing N N 433 TRP CA CB sing N N 434 TRP CA HA sing N N 435 TRP C O doub N N 436 TRP C OXT sing N N 437 TRP CB CG sing N N 438 TRP CB HB2 sing N N 439 TRP CB HB3 sing N N 440 TRP CG CD1 doub Y N 441 TRP CG CD2 sing Y N 442 TRP CD1 NE1 sing Y N 443 TRP CD1 HD1 sing N N 444 TRP CD2 CE2 doub Y N 445 TRP CD2 CE3 sing Y N 446 TRP NE1 CE2 sing Y N 447 TRP NE1 HE1 sing N N 448 TRP CE2 CZ2 sing Y N 449 TRP CE3 CZ3 doub Y N 450 TRP CE3 HE3 sing N N 451 TRP CZ2 CH2 doub Y N 452 TRP CZ2 HZ2 sing N N 453 TRP CZ3 CH2 sing Y N 454 TRP CZ3 HZ3 sing N N 455 TRP CH2 HH2 sing N N 456 TRP OXT HXT sing N N 457 TYR N CA sing N N 458 TYR N H sing N N 459 TYR N H2 sing N N 460 TYR CA C sing N N 461 TYR CA CB sing N N 462 TYR CA HA sing N N 463 TYR C O doub N N 464 TYR C OXT sing N N 465 TYR CB CG sing N N 466 TYR CB HB2 sing N N 467 TYR CB HB3 sing N N 468 TYR CG CD1 doub Y N 469 TYR CG CD2 sing Y N 470 TYR CD1 CE1 sing Y N 471 TYR CD1 HD1 sing N N 472 TYR CD2 CE2 doub Y N 473 TYR CD2 HD2 sing N N 474 TYR CE1 CZ doub Y N 475 TYR CE1 HE1 sing N N 476 TYR CE2 CZ sing Y N 477 TYR CE2 HE2 sing N N 478 TYR CZ OH sing N N 479 TYR OH HH sing N N 480 TYR OXT HXT sing N N 481 VAL N CA sing N N 482 VAL N H sing N N 483 VAL N H2 sing N N 484 VAL CA C sing N N 485 VAL CA CB sing N N 486 VAL CA HA sing N N 487 VAL C O doub N N 488 VAL C OXT sing N N 489 VAL CB CG1 sing N N 490 VAL CB CG2 sing N N 491 VAL CB HB sing N N 492 VAL CG1 HG11 sing N N 493 VAL CG1 HG12 sing N N 494 VAL CG1 HG13 sing N N 495 VAL CG2 HG21 sing N N 496 VAL CG2 HG22 sing N N 497 VAL CG2 HG23 sing N N 498 VAL OXT HXT sing N N 499 # _ndb_struct_conf_na.entry_id 9D9R _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 1 1_555 D DG 17 1_555 0.838 -0.406 0.166 -5.987 -14.233 0.329 1 C_DC1:DG34_D C 1 ? D 34 ? 19 1 1 C DG 2 1_555 D DC 16 1_555 -0.594 -0.253 -0.048 -8.012 -4.540 -1.719 2 C_DG2:DC33_D C 2 ? D 33 ? 19 1 1 C DC 3 1_555 D DG 15 1_555 0.773 -0.161 0.077 6.399 -0.599 0.819 3 C_DC3:DG32_D C 3 ? D 32 ? 19 1 1 C DT 4 1_555 D DA 14 1_555 0.055 -0.057 -0.411 10.176 -8.653 10.411 4 C_DT4:DA31_D C 4 ? D 31 ? 20 1 1 C DA 5 1_555 D DT 13 1_555 0.148 -0.251 -0.277 -5.452 -17.900 6.566 5 C_DA5:DT30_D C 5 ? D 30 ? 20 1 1 C DA 6 1_555 D DT 12 1_555 0.011 -0.131 -0.164 -8.021 -14.881 8.082 6 C_DA6:DT29_D C 6 ? D 29 ? 20 1 1 C DT 7 1_555 D DA 11 1_555 0.100 -0.071 -0.076 -1.029 -14.947 2.595 7 C_DT7:DA28_D C 7 ? D 28 ? 20 1 1 C DT 8 1_555 D DA 10 1_555 0.250 -0.147 -0.097 -5.553 -24.295 1.933 8 C_DT8:DA27_D C 8 ? D 27 ? 20 1 1 C DC 9 1_555 D DG 9 1_555 0.584 -0.072 0.316 -15.060 -10.749 4.303 9 C_DC9:DG26_D C 9 ? D 26 ? 19 1 1 C DA 10 1_555 D DT 8 1_555 -0.495 0.093 -0.165 0.235 -13.823 10.089 10 C_DA10:DT25_D C 10 ? D 25 ? 20 1 1 C DA 11 1_555 D DT 7 1_555 0.029 -0.059 -0.304 0.827 -16.960 0.468 11 C_DA11:DT24_D C 11 ? D 24 ? 20 1 1 C DT 12 1_555 D DA 6 1_555 -0.077 0.032 -0.061 6.909 -13.789 8.216 12 C_DT12:DA23_D C 12 ? D 23 ? 20 1 1 C DT 13 1_555 D DA 5 1_555 -0.043 0.101 0.196 -3.331 -18.865 9.059 13 C_DT13:DA22_D C 13 ? D 22 ? 20 1 1 C DA 14 1_555 D DT 4 1_555 -0.105 -0.092 -0.384 -5.056 -4.505 8.337 14 C_DA14:DT21_D C 14 ? D 21 ? 20 1 1 C DA 15 1_555 D DT 3 1_555 0.026 0.019 0.124 0.108 -5.168 6.668 15 C_DA15:DT20_D C 15 ? D 20 ? 20 1 1 C DC 16 1_555 D DG 2 1_555 0.409 -0.231 -0.137 8.003 -15.242 -1.062 16 C_DC16:DG19_D C 16 ? D 19 ? 19 1 1 C DG 17 1_555 D DC 1 1_555 -0.150 -0.322 -0.022 4.958 -15.830 -2.381 17 C_DG17:DC18_D C 17 ? D 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 1 1_555 D DG 17 1_555 C DG 2 1_555 D DC 16 1_555 0.307 0.945 3.287 0.300 2.863 32.839 1.170 -0.488 3.358 5.052 -0.530 32.961 1 CC_DC1DG2:DC33DG34_DD C 1 ? D 34 ? C 2 ? D 33 ? 1 C DG 2 1_555 D DC 16 1_555 C DC 3 1_555 D DG 15 1_555 0.165 0.078 3.001 -1.147 4.455 34.066 -0.508 -0.444 2.980 7.561 1.947 34.366 2 CC_DG2DC3:DG32DC33_DD C 2 ? D 33 ? C 3 ? D 32 ? 1 C DC 3 1_555 D DG 15 1_555 C DT 4 1_555 D DA 14 1_555 1.703 0.293 3.094 10.601 7.992 30.379 -0.896 -1.118 3.449 14.417 -19.124 33.090 3 CC_DC3DT4:DA31DG32_DD C 3 ? D 32 ? C 4 ? D 31 ? 1 C DT 4 1_555 D DA 14 1_555 C DA 5 1_555 D DT 13 1_555 -1.270 0.638 3.689 -5.560 8.697 38.539 -0.248 1.107 3.877 12.897 8.244 39.847 4 CC_DT4DA5:DT30DA31_DD C 4 ? D 31 ? C 5 ? D 30 ? 1 C DA 5 1_555 D DT 13 1_555 C DA 6 1_555 D DT 12 1_555 -0.035 -0.219 3.251 -2.589 1.902 35.891 -0.622 -0.309 3.230 3.080 4.191 36.030 5 CC_DA5DA6:DT29DT30_DD C 5 ? D 30 ? C 6 ? D 29 ? 1 C DA 6 1_555 D DT 12 1_555 C DT 7 1_555 D DA 11 1_555 -0.838 -0.812 3.033 -1.353 4.651 29.578 -2.448 1.367 2.909 9.033 2.627 29.963 6 CC_DA6DT7:DA28DT29_DD C 6 ? D 29 ? C 7 ? D 28 ? 1 C DT 7 1_555 D DA 11 1_555 C DT 8 1_555 D DA 10 1_555 -0.502 -0.258 3.308 -1.569 0.889 34.947 -0.565 0.596 3.319 1.480 2.611 34.992 7 CC_DT7DT8:DA27DA28_DD C 7 ? D 28 ? C 8 ? D 27 ? 1 C DT 8 1_555 D DA 10 1_555 C DC 9 1_555 D DG 9 1_555 -0.086 -0.394 3.531 -1.248 10.511 34.454 -2.230 -0.050 3.275 17.248 2.048 35.996 8 CC_DT8DC9:DG26DA27_DD C 8 ? D 27 ? C 9 ? D 26 ? 1 C DC 9 1_555 D DG 9 1_555 C DA 10 1_555 D DT 8 1_555 0.034 0.857 3.061 3.263 9.816 30.033 -0.200 0.524 3.164 18.274 -6.074 31.725 9 CC_DC9DA10:DT25DG26_DD C 9 ? D 26 ? C 10 ? D 25 ? 1 C DA 10 1_555 D DT 8 1_555 C DA 11 1_555 D DT 7 1_555 -0.250 0.001 3.249 -0.139 3.031 35.113 -0.445 0.393 3.239 5.012 0.230 35.240 10 CC_DA10DA11:DT24DT25_DD C 10 ? D 25 ? C 11 ? D 24 ? 1 C DA 11 1_555 D DT 7 1_555 C DT 12 1_555 D DA 6 1_555 0.877 -0.741 3.087 -0.839 0.195 28.645 -1.538 -1.949 3.056 0.395 1.695 28.658 11 CC_DA11DT12:DA23DT24_DD C 11 ? D 24 ? C 12 ? D 23 ? 1 C DT 12 1_555 D DA 6 1_555 C DT 13 1_555 D DA 5 1_555 -0.154 -0.006 3.538 0.305 0.873 37.408 -0.133 0.284 3.536 1.361 -0.476 37.419 12 CC_DT12DT13:DA22DA23_DD C 12 ? D 23 ? C 13 ? D 22 ? 1 C DT 13 1_555 D DA 5 1_555 C DA 14 1_555 D DT 4 1_555 0.611 1.208 3.476 5.909 -2.873 42.456 1.954 -0.212 3.442 -3.939 -8.101 42.938 13 CC_DT13DA14:DT21DA22_DD C 13 ? D 22 ? C 14 ? D 21 ? 1 C DA 14 1_555 D DT 4 1_555 C DA 15 1_555 D DT 3 1_555 -1.484 0.729 3.150 -8.664 8.555 34.917 -0.057 1.120 3.486 13.751 13.926 36.917 14 CC_DA14DA15:DT20DT21_DD C 14 ? D 21 ? C 15 ? D 20 ? 1 C DA 15 1_555 D DT 3 1_555 C DC 16 1_555 D DG 2 1_555 -0.277 0.045 3.119 0.785 -0.736 34.206 0.187 0.589 3.110 -1.251 -1.334 34.223 15 CC_DA15DC16:DG19DT20_DD C 15 ? D 20 ? C 16 ? D 19 ? 1 C DC 16 1_555 D DG 2 1_555 C DG 17 1_555 D DC 1 1_555 0.057 0.726 3.362 1.315 7.372 33.437 0.010 0.122 3.439 12.617 -2.251 34.242 16 CC_DC16DG17:DC18DG19_DD C 16 ? D 19 ? C 17 ? D 18 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Center for Advancing Translational Sciences (NIH/NCATS)' 'United States' 1R03TR004875 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 5R01GM079428 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1fjl _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9D9R _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.014192 _atom_sites.fract_transf_matrix[1][2] 0.008194 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016388 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006284 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ # loop_ #