HEADER VIRUS 21-AUG-24 9D9S TITLE CRYO-EM STRUCTURE OF HUMAN ENTEROVIRUS D94 FULL PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 565-862; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VP2; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 79-316; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VP3; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: UNP RESIDUES 318-564; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: VP4; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: UNP RESIDUES 30-68 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS D94; SOURCE 3 ORGANISM_TAXID: 2015550; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ENTEROVIRUS D94; SOURCE 6 ORGANISM_TAXID: 2015550; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROVIRUS D94; SOURCE 9 ORGANISM_TAXID: 2015550; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ENTEROVIRUS D94; SOURCE 12 ORGANISM_TAXID: 2015550 KEYWDS ENTEROVIRUS, EV-D94, PICORNAVIRUS, FULL-PARTICLE, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 CSGID, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR J.FU,T.KLOSE,M.R.ROSSMANN,R.KUHN,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 2 INFECTIOUS DISEASES (CSGID) REVDAT 1 03-SEP-25 9D9S 0 JRNL AUTH J.FU,T.KLOSE,M.R.ROSSMANN,F.J.M.VANKUPPEVELD,R.J.KUHN JRNL TITL CRYO-EM STRUCTURE OF HUMAN ENTEROVIRUS D94 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 7068 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9D9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000285143. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS D REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2700.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.951057 -0.000001 551.08510 REMARK 350 BIOMT2 2 0.951057 0.309017 0.000001 -87.28357 REMARK 350 BIOMT3 2 -0.000001 -0.000001 1.000000 0.00052 REMARK 350 BIOMT1 3 -0.809017 -0.587785 -0.000002 804.39137 REMARK 350 BIOMT2 3 0.587785 -0.809017 0.000001 409.85740 REMARK 350 BIOMT3 3 -0.000002 -0.000001 1.000000 0.00075 REMARK 350 BIOMT1 4 -0.809017 0.587785 -0.000002 409.85815 REMARK 350 BIOMT2 4 -0.587785 -0.809017 -0.000001 804.39099 REMARK 350 BIOMT3 4 -0.000002 0.000001 1.000000 0.00038 REMARK 350 BIOMT1 5 0.309017 0.951057 -0.000001 -87.28305 REMARK 350 BIOMT2 5 -0.951057 0.309017 -0.000001 551.08518 REMARK 350 BIOMT3 5 -0.000001 0.000001 1.000000 -0.00008 REMARK 350 BIOMT1 6 -0.638195 0.262866 -0.723608 704.42426 REMARK 350 BIOMT2 6 0.262866 -0.809017 -0.525731 695.34426 REMARK 350 BIOMT3 6 -0.723608 -0.525731 0.447212 604.81166 REMARK 350 BIOMT1 7 0.052788 0.688190 -0.723607 329.78010 REMARK 350 BIOMT2 7 -0.688190 -0.500000 -0.525732 910.81944 REMARK 350 BIOMT3 7 -0.723607 0.525732 0.447212 251.93007 REMARK 350 BIOMT1 8 0.670821 0.162459 -0.723607 298.80256 REMARK 350 BIOMT2 8 -0.688190 0.500000 -0.525732 575.20944 REMARK 350 BIOMT3 8 0.276393 0.850651 0.447213 -192.72658 REMARK 350 BIOMT1 9 0.361803 -0.587785 -0.723607 654.30153 REMARK 350 BIOMT2 9 0.262866 0.809017 -0.525731 152.31587 REMARK 350 BIOMT3 9 0.894427 -0.000001 0.447214 -114.65790 REMARK 350 BIOMT1 10 -0.447213 -0.525730 -0.723608 904.98953 REMARK 350 BIOMT2 10 0.850651 0.000000 -0.525730 226.56327 REMARK 350 BIOMT3 10 0.276392 -0.850651 0.447213 378.24783 REMARK 350 BIOMT1 11 -0.052788 0.688190 0.723607 -120.48731 REMARK 350 BIOMT2 11 0.688190 -0.500000 0.525732 96.01056 REMARK 350 BIOMT3 11 0.723607 0.525732 -0.447212 66.40827 REMARK 350 BIOMT1 12 0.638195 0.262866 0.723608 -209.64520 REMARK 350 BIOMT2 12 -0.262866 -0.809017 0.525731 518.90413 REMARK 350 BIOMT3 12 0.723608 -0.525731 -0.447212 419.28943 REMARK 350 BIOMT1 13 0.447213 -0.525730 0.723608 119.11118 REMARK 350 BIOMT2 13 -0.850651 0.000000 0.525730 444.65673 REMARK 350 BIOMT3 13 -0.276392 -0.850651 -0.447213 863.94635 REMARK 350 BIOMT1 14 -0.361803 -0.587785 0.723607 411.45169 REMARK 350 BIOMT2 14 -0.262866 0.809017 0.525731 -24.12426 REMARK 350 BIOMT3 14 -0.894427 -0.000001 -0.447214 785.87829 REMARK 350 BIOMT1 15 -0.670821 0.162459 0.723607 263.37168 REMARK 350 BIOMT2 15 0.688190 0.500000 0.525732 -239.59944 REMARK 350 BIOMT3 15 -0.276393 0.850651 -0.447213 292.97265 REMARK 350 BIOMT1 16 -0.309017 -0.951057 0.000001 758.50306 REMARK 350 BIOMT2 16 -0.951057 0.309017 -0.000001 551.08518 REMARK 350 BIOMT3 16 0.000001 -0.000001 -1.000000 671.22009 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 671.22000 REMARK 350 BIOMT2 17 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 671.22001 REMARK 350 BIOMT1 18 -0.309017 0.951057 0.000001 120.13490 REMARK 350 BIOMT2 18 0.951057 0.309017 0.000001 -87.28357 REMARK 350 BIOMT3 18 0.000001 0.000001 -1.000000 671.21950 REMARK 350 BIOMT1 19 0.809017 0.587785 0.000002 -133.17137 REMARK 350 BIOMT2 19 0.587785 -0.809017 0.000001 409.85740 REMARK 350 BIOMT3 19 0.000002 0.000001 -1.000000 671.21926 REMARK 350 BIOMT1 20 0.809017 -0.587785 0.000002 261.36185 REMARK 350 BIOMT2 20 -0.587785 -0.809017 -0.000001 804.39099 REMARK 350 BIOMT3 20 0.000002 -0.000001 -1.000000 671.21963 REMARK 350 BIOMT1 21 -0.138198 -0.951057 0.276393 608.41446 REMARK 350 BIOMT2 21 0.425326 -0.309017 -0.850650 582.06226 REMARK 350 BIOMT3 21 0.894427 -0.000001 0.447215 -114.65795 REMARK 350 BIOMT1 22 -0.947214 -0.162459 0.276392 615.26752 REMARK 350 BIOMT2 22 -0.162459 -0.500000 -0.850651 843.42486 REMARK 350 BIOMT3 22 0.276392 -0.850651 0.447214 378.24756 REMARK 350 BIOMT1 23 -0.447213 0.850651 0.276392 107.45209 REMARK 350 BIOMT2 23 -0.525730 0.000000 -0.850651 797.53744 REMARK 350 BIOMT3 23 -0.723608 -0.525730 0.447213 604.81110 REMARK 350 BIOMT1 24 0.670821 0.688190 0.276393 -213.24817 REMARK 350 BIOMT2 24 -0.162459 0.500000 -0.850651 507.81486 REMARK 350 BIOMT3 24 -0.723607 0.525732 0.447213 251.92956 REMARK 350 BIOMT1 25 0.861803 -0.425326 0.276394 96.36361 REMARK 350 BIOMT2 25 0.425326 0.309017 -0.850650 374.64387 REMARK 350 BIOMT3 25 0.276394 0.850650 0.447214 -192.72676 REMARK 350 BIOMT1 26 -0.361803 0.587785 0.723607 16.91847 REMARK 350 BIOMT2 26 0.262866 0.809017 -0.525731 152.31587 REMARK 350 BIOMT3 26 -0.894427 0.000001 -0.447214 785.87792 REMARK 350 BIOMT1 27 0.447213 0.525730 0.723608 -233.76953 REMARK 350 BIOMT2 27 0.850651 0.000000 -0.525730 226.56327 REMARK 350 BIOMT3 27 -0.276392 0.850651 -0.447213 292.97218 REMARK 350 BIOMT1 28 0.638195 -0.262866 0.723608 -33.20426 REMARK 350 BIOMT2 28 0.262866 -0.809017 -0.525731 695.34426 REMARK 350 BIOMT3 28 0.723608 0.525731 -0.447212 66.40835 REMARK 350 BIOMT1 29 -0.052788 -0.688190 0.723607 341.43990 REMARK 350 BIOMT2 29 -0.688190 -0.500000 -0.525732 910.81944 REMARK 350 BIOMT3 29 0.723607 -0.525732 -0.447212 419.28994 REMARK 350 BIOMT1 30 -0.670821 -0.162459 0.723607 372.41745 REMARK 350 BIOMT2 30 -0.688190 0.500000 -0.525732 575.20944 REMARK 350 BIOMT3 30 -0.276393 -0.850651 -0.447213 863.94658 REMARK 350 BIOMT1 31 -0.447213 0.525730 -0.723608 552.10882 REMARK 350 BIOMT2 31 -0.850651 0.000000 0.525730 444.65673 REMARK 350 BIOMT3 31 0.276392 0.850651 0.447213 -192.72634 REMARK 350 BIOMT1 32 0.361803 0.587785 -0.723607 259.76831 REMARK 350 BIOMT2 32 -0.262866 0.809017 0.525731 -24.12426 REMARK 350 BIOMT3 32 0.894427 0.000001 0.447214 -114.65827 REMARK 350 BIOMT1 33 0.670821 -0.162459 -0.723607 407.84832 REMARK 350 BIOMT2 33 0.688190 0.500000 0.525732 -239.59944 REMARK 350 BIOMT3 33 0.276393 -0.850651 0.447213 378.24737 REMARK 350 BIOMT1 34 0.052788 -0.688190 -0.723607 791.70731 REMARK 350 BIOMT2 34 0.688190 -0.500000 0.525732 96.01056 REMARK 350 BIOMT3 34 -0.723607 -0.525732 0.447212 604.81174 REMARK 350 BIOMT1 35 -0.638195 -0.262866 -0.723608 880.86520 REMARK 350 BIOMT2 35 -0.262866 -0.809017 0.525731 518.90413 REMARK 350 BIOMT3 35 -0.723608 0.525731 0.447212 251.93058 REMARK 350 BIOMT1 36 0.947214 -0.162459 -0.276392 164.99824 REMARK 350 BIOMT2 36 0.162459 -0.500000 0.850651 163.40515 REMARK 350 BIOMT3 36 -0.276392 -0.850651 -0.447214 863.94639 REMARK 350 BIOMT1 37 0.138198 -0.951057 -0.276393 701.17369 REMARK 350 BIOMT2 37 -0.425326 -0.309017 0.850650 296.57613 REMARK 350 BIOMT3 37 -0.894427 -0.000001 -0.447215 785.87856 REMARK 350 BIOMT1 38 -0.861803 -0.425326 -0.276394 860.34385 REMARK 350 BIOMT2 38 -0.425326 0.309017 0.850650 89.15774 REMARK 350 BIOMT3 38 -0.276394 0.850650 -0.447214 292.97321 REMARK 350 BIOMT1 39 -0.670821 0.688190 -0.276393 422.54096 REMARK 350 BIOMT2 39 0.162459 0.500000 0.850651 -172.20486 REMARK 350 BIOMT3 39 0.723607 0.525732 -0.447213 66.40878 REMARK 350 BIOMT1 40 0.447213 0.850651 -0.276392 -7.20625 REMARK 350 BIOMT2 40 0.525730 0.000000 0.850651 -126.31744 REMARK 350 BIOMT3 40 0.723608 -0.525730 -0.447213 419.28962 REMARK 350 BIOMT1 41 -0.138198 0.425326 0.894427 -60.93173 REMARK 350 BIOMT2 41 -0.951057 -0.309017 -0.000001 758.50357 REMARK 350 BIOMT3 41 0.276393 -0.850650 0.447215 378.24692 REMARK 350 BIOMT1 42 0.361803 0.262866 0.894427 -174.21395 REMARK 350 BIOMT2 42 -0.587785 0.809017 -0.000001 261.36260 REMARK 350 BIOMT3 42 -0.723607 -0.525731 0.447214 604.81084 REMARK 350 BIOMT1 43 0.361803 -0.262866 0.894427 2.22700 REMARK 350 BIOMT2 43 0.587785 0.809017 0.000001 -133.17099 REMARK 350 BIOMT3 43 -0.723607 0.525731 0.447214 251.92976 REMARK 350 BIOMT1 44 -0.138198 -0.425326 0.894427 224.55572 REMARK 350 BIOMT2 44 0.951057 -0.309017 0.000001 120.13482 REMARK 350 BIOMT3 44 0.276393 0.850650 0.447215 -192.72664 REMARK 350 BIOMT1 45 -0.447215 0.000000 0.894426 185.52148 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 671.22000 REMARK 350 BIOMT3 45 0.894426 0.000000 0.447215 -114.65834 REMARK 350 BIOMT1 46 -0.447213 -0.850651 0.276392 678.42625 REMARK 350 BIOMT2 46 0.525730 0.000000 0.850651 -126.31744 REMARK 350 BIOMT3 46 -0.723608 0.525730 0.447213 251.93040 REMARK 350 BIOMT1 47 -0.947214 0.162459 0.276392 506.22176 REMARK 350 BIOMT2 47 0.162459 -0.500000 0.850651 163.40514 REMARK 350 BIOMT3 47 0.276392 0.850651 0.447214 -192.72638 REMARK 350 BIOMT1 48 -0.138198 0.951057 0.276393 -29.95369 REMARK 350 BIOMT2 48 -0.425326 -0.309017 0.850650 296.57613 REMARK 350 BIOMT3 48 0.894427 0.000001 0.447215 -114.65854 REMARK 350 BIOMT1 49 0.861803 0.425326 0.276394 -189.12384 REMARK 350 BIOMT2 49 -0.425326 0.309017 0.850650 89.15774 REMARK 350 BIOMT3 49 0.276394 -0.850650 0.447214 378.24681 REMARK 350 BIOMT1 50 0.670821 -0.688190 0.276393 248.67904 REMARK 350 BIOMT2 50 0.162459 0.500000 0.850651 -172.20486 REMARK 350 BIOMT3 50 -0.723607 -0.525732 0.447213 604.81123 REMARK 350 BIOMT1 51 0.947214 0.162459 -0.276392 55.95248 REMARK 350 BIOMT2 51 -0.162459 -0.500000 -0.850651 843.42486 REMARK 350 BIOMT3 51 -0.276392 0.850651 -0.447214 292.97245 REMARK 350 BIOMT1 52 0.447213 -0.850651 -0.276392 563.76791 REMARK 350 BIOMT2 52 -0.525730 0.000000 -0.850651 797.53744 REMARK 350 BIOMT3 52 0.723608 0.525730 -0.447213 66.40891 REMARK 350 BIOMT1 53 -0.670821 -0.688190 -0.276393 884.46817 REMARK 350 BIOMT2 53 -0.162459 0.500000 -0.850651 507.81486 REMARK 350 BIOMT3 53 0.723607 -0.525732 -0.447213 419.29045 REMARK 350 BIOMT1 54 -0.861803 0.425326 -0.276394 574.85640 REMARK 350 BIOMT2 54 0.425326 0.309017 -0.850650 374.64387 REMARK 350 BIOMT3 54 -0.276394 -0.850650 -0.447214 863.94677 REMARK 350 BIOMT1 55 0.138198 0.951057 -0.276393 62.80554 REMARK 350 BIOMT2 55 0.425326 -0.309017 -0.850650 582.06226 REMARK 350 BIOMT3 55 -0.894427 0.000001 -0.447215 785.87796 REMARK 350 BIOMT1 56 -0.361803 0.262866 -0.894427 668.99300 REMARK 350 BIOMT2 56 0.587785 0.809017 0.000001 -133.17099 REMARK 350 BIOMT3 56 0.723607 -0.525731 -0.447214 419.29025 REMARK 350 BIOMT1 57 0.138198 0.425326 -0.894427 446.66428 REMARK 350 BIOMT2 57 0.951057 -0.309017 0.000001 120.13482 REMARK 350 BIOMT3 57 -0.276393 -0.850650 -0.447215 863.94666 REMARK 350 BIOMT1 58 0.447215 0.000000 -0.894426 485.69852 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 671.22000 REMARK 350 BIOMT3 58 -0.894426 0.000000 -0.447215 785.87835 REMARK 350 BIOMT1 59 0.138198 -0.425326 -0.894427 732.15173 REMARK 350 BIOMT2 59 -0.951057 -0.309017 -0.000001 758.50357 REMARK 350 BIOMT3 59 -0.276393 0.850650 -0.447215 292.97308 REMARK 350 BIOMT1 60 -0.361803 -0.262866 -0.894427 845.43395 REMARK 350 BIOMT2 60 -0.587785 0.809017 -0.000001 261.36260 REMARK 350 BIOMT3 60 0.723607 0.525731 -0.447214 66.40918 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 159 OE2 GLU C 54 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 89 62.45 -100.08 REMARK 500 THR A 131 -95.78 57.01 REMARK 500 VAL A 252 75.65 54.84 REMARK 500 ALA A 281 89.82 -162.66 REMARK 500 THR B 165 -131.43 -91.27 REMARK 500 ARG B 243 -158.91 -155.97 REMARK 500 ASN C 56 49.25 -91.16 REMARK 500 PRO C 203 -178.43 -67.78 REMARK 500 SER D 41 50.35 -113.56 REMARK 500 ASP D 48 73.28 -151.00 REMARK 500 PRO D 49 2.82 -63.61 REMARK 500 PRO D 55 57.34 -92.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-46677 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN ENTEROVIRUS D94 FULL PARTICLE DBREF 9D9S A 1 298 UNP A3QWZ2 A3QWZ2_9ENTO 565 862 DBREF 9D9S B 10 247 UNP A3QWZ2 A3QWZ2_9ENTO 79 316 DBREF 9D9S C 1 247 UNP A3QWZ2 A3QWZ2_9ENTO 318 564 DBREF 9D9S D 29 67 UNP A3QWZ2 A3QWZ2_9ENTO 30 68 SEQRES 1 A 298 ILE GLU GLU VAL MET LYS THR VAL ALA ASN THR VAL GLU SEQRES 2 A 298 SER GLU ILE ARG ALA GLU LEU GLY VAL ILE PRO SER LEU SEQRES 3 A 298 ASN ALA ALA GLU THR GLY ALA THR SER ASN THR THR PRO SEQRES 4 A 298 GLU GLU ALA ILE GLN THR ARG ALA VAL ILE ASN GLN HIS SEQRES 5 A 298 GLY THR SER GLU THR LEU VAL GLU ASN PHE LEU GLY ARG SEQRES 6 A 298 ALA ALA LEU VAL MET MET LYS ASP PHE GLU TYR LYS ASN SEQRES 7 A 298 HIS VAL THR GLY THR GLN LYS VAL GLN GLN ASN PHE PHE SEQRES 8 A 298 LYS TRP THR ILE ASN THR ARG SER TYR VAL GLN LEU ARG SEQRES 9 A 298 ARG LYS PHE GLU LEU PHE THR TYR ILE ARG PHE ASP SER SEQRES 10 A 298 GLU ILE THR ILE VAL PRO THR ILE ARG LEU TYR THR SER SEQRES 11 A 298 THR GLY ALA SER TYR SER GLY LEU PRO ASN LEU THR LEU SEQRES 12 A 298 GLN ALA MET PHE VAL PRO VAL GLY ALA PRO THR PRO LYS SEQRES 13 A 298 SER GLN ASP SER TYR GLU TRP GLN SER ALA CYS ASN PRO SEQRES 14 A 298 SER VAL PHE PHE LYS ILE ASP ASP PRO PRO ALA ARG MET SEQRES 15 A 298 THR ILE PRO PHE MET CYS ILE ASN SER ALA TYR GLY MET SEQRES 16 A 298 PHE TYR ASP GLY PHE ALA GLY PHE GLU LYS THR ALA ASN SEQRES 17 A 298 GLY LEU TYR GLY ILE ASN PRO ALA ASN THR MET GLY ASN SEQRES 18 A 298 LEU CYS ILE ARG VAL VAL ASN ALA TYR GLN PRO VAL GLN SEQRES 19 A 298 TYR THR ILE THR ILE ARG ILE TYR LEU LYS PRO LYS HIS SEQRES 20 A 298 ILE LYS ALA TRP VAL PRO ARG PRO PRO ARG THR MET PRO SEQRES 21 A 298 TYR MET SER ILE ALA ASN THR ASN TYR THR GLY HIS SER SEQRES 22 A 298 SER ALA PRO ASN ASN VAL ASN ALA ILE VAL GLY ASN ARG SEQRES 23 A 298 THR ASN ILE THR THR MET PRO ASN ASP ILE VAL THR SEQRES 1 B 238 SER ASP ARG VAL LEU GLN LEU LYS LEU GLY ASN SER ALA SEQRES 2 B 238 ILE VAL THR GLN GLU ALA ALA ASN MET CYS CYS ALA TYR SEQRES 3 B 238 GLY GLU TRP PRO SER TYR LEU PRO ASP ASN GLU ALA THR SEQRES 4 B 238 ALA ILE ASP LYS PRO THR GLN PRO GLU THR SER THR ASP SEQRES 5 B 238 ARG PHE TYR THR LEU LYS SER VAL LYS TRP GLU GLY THR SEQRES 6 B 238 SER THR GLY TRP TRP TRP LYS LEU PRO ASP ALA LEU ASN SEQRES 7 B 238 GLN THR GLY MET PHE GLY GLN ASN VAL GLN TYR HIS TYR SEQRES 8 B 238 LEU TYR ARG SER GLY PHE LEU CYS HIS VAL GLN CYS ASN SEQRES 9 B 238 ALA THR LYS PHE HIS GLN GLY ALA LEU LEU VAL VAL ALA SEQRES 10 B 238 ILE PRO GLU HIS GLN LEU GLY LYS TYR ASN THR GLY THR SEQRES 11 B 238 SER ALA SER PHE ASP ASP VAL MET LYS GLY LYS THR GLY SEQRES 12 B 238 GLY VAL PHE THR HIS PRO TYR VAL LEU ASP ASP GLY THR SEQRES 13 B 238 SER LEU ALA CYS SER LEU ILE PHE PRO HIS GLN TRP ILE SEQRES 14 B 238 ASN LEU ARG THR ASN ASN SER ALA THR ILE MET LEU PRO SEQRES 15 B 238 TRP MET ASN CYS ALA PRO MET ASP PHE ALA LEU ARG HIS SEQRES 16 B 238 ASN GLN TRP THR LEU ALA ILE ILE PRO VAL VAL PRO LEU SEQRES 17 B 238 ASN THR SER GLY GLY THR THR MET VAL PRO ILE THR VAL SEQRES 18 B 238 SER ILE ALA PRO MET CYS CYS GLU PHE ASN GLY LEU ARG SEQRES 19 B 238 ASN ALA ILE THR SEQRES 1 C 247 GLY VAL PRO THR TYR LEU LEU PRO GLY SER SER GLN PHE SEQRES 2 C 247 MET THR THR ASP ASP HIS SER SER ALA PRO ALA PHE PRO SEQRES 3 C 247 ASP PHE SER PRO THR PRO GLU ILE HIS ILE PRO GLY ARG SEQRES 4 C 247 VAL HIS ASN MET LEU GLU LEU VAL GLN VAL GLU SER MET SEQRES 5 C 247 MET GLU ILE ASN ASN VAL ALA GLY SER SER GLY MET GLU SEQRES 6 C 247 ARG LEU ARG VAL GLU ILE SER VAL GLN THR ASP MET ASP SEQRES 7 C 247 ALA LEU LEU PHE ASN ILE PRO LEU ASP ILE GLN LEU ASP SEQRES 8 C 247 GLY PRO LEU ARG SER THR LEU LEU ALA ASN ILE ALA ARG SEQRES 9 C 247 TYR TYR THR HIS TRP SER GLY SER MET GLU MET THR PHE SEQRES 10 C 247 MET PHE CYS GLY SER PHE MET ALA THR GLY LYS VAL ILE SEQRES 11 C 247 LEU CYS TYR THR PRO PRO GLY GLY SER CYS PRO THR ASP SEQRES 12 C 247 ARG GLU SER ALA MET LEU GLY THR HIS ILE VAL TRP ASP SEQRES 13 C 247 PHE GLY LEU GLN SER SER ILE THR LEU VAL ILE PRO TRP SEQRES 14 C 247 ILE SER GLY SER HIS PHE ARG MET PHE ASN SER ASP ALA SEQRES 15 C 247 LYS SER ILE ASN ALA ASN VAL GLY TYR VAL THR CYS PHE SEQRES 16 C 247 MET GLN THR ASN LEU ILE VAL PRO LYS GLU ALA ALA THR SEQRES 17 C 247 SER THR TYR ILE ILE GLY PHE ALA ALA ALA LYS ASN ASP SEQRES 18 C 247 PHE SER LEU ARG LEU MET ARG ASP SER PRO ASP ILE GLY SEQRES 19 C 247 GLN SER GLN GLN LEU GLU GLY ALA THR ALA ALA PHE GLN SEQRES 1 D 39 ILE ASN PHE TYR LYS ASP SER TYR ALA ALA SER ALA SER SEQRES 2 D 39 LYS GLN ASP PHE SER GLN ASP PRO SER LYS PHE THR GLU SEQRES 3 D 39 PRO VAL ALA ASP ALA LEU LYS ALA GLY ALA PRO VAL LEU HET SPH A1000 21 HETNAM SPH SPHINGOSINE FORMUL 5 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 28 GLY A 32 5 5 HELIX 2 AA2 THR A 38 ILE A 43 1 6 HELIX 3 AA3 LEU A 58 GLY A 64 1 7 HELIX 4 AA4 TYR A 100 GLU A 108 1 9 HELIX 5 AA5 SER A 160 SER A 165 5 6 HELIX 6 AA6 TYR B 35 GLU B 37 5 3 HELIX 7 AA7 THR B 89 TYR B 98 1 10 HELIX 8 AA8 SER B 142 MET B 147 1 6 HELIX 9 AA9 LYS B 148 GLY B 152 5 5 HELIX 10 AB1 HIS B 157 LEU B 161 5 5 HELIX 11 AB2 LEU B 167 PHE B 173 5 7 HELIX 12 AB3 MET C 43 GLN C 48 1 6 HELIX 13 AB4 SER C 62 ARG C 66 5 5 HELIX 14 AB5 GLY C 92 SER C 96 5 5 HELIX 15 AB6 THR C 97 ARG C 104 1 8 HELIX 16 AB7 ASP C 143 MET C 148 1 6 HELIX 17 AB8 ALA C 242 GLN C 247 5 6 HELIX 18 AB9 ASP D 34 ALA D 38 5 5 HELIX 19 AC1 PRO D 49 GLU D 54 1 6 SHEET 1 AA1 2 GLU A 3 VAL A 4 0 SHEET 2 AA1 2 SER D 46 GLN D 47 -1 O GLN D 47 N GLU A 3 SHEET 1 AA2 5 LEU A 26 ASN A 27 0 SHEET 2 AA2 5 SER C 162 ILE C 167 -1 O SER C 162 N ASN A 27 SHEET 3 AA2 5 MET C 113 PHE C 119 -1 N MET C 115 O LEU C 165 SHEET 4 AA2 5 SER C 209 ALA C 218 -1 O PHE C 215 N THR C 116 SHEET 5 AA2 5 SER C 51 MET C 52 -1 N SER C 51 O ALA C 216 SHEET 1 AA3 5 LEU A 26 ASN A 27 0 SHEET 2 AA3 5 SER C 162 ILE C 167 -1 O SER C 162 N ASN A 27 SHEET 3 AA3 5 MET C 113 PHE C 119 -1 N MET C 115 O LEU C 165 SHEET 4 AA3 5 SER C 209 ALA C 218 -1 O PHE C 215 N THR C 116 SHEET 5 AA3 5 ARG C 68 SER C 72 -1 N ILE C 71 O THR C 210 SHEET 1 AA4 4 ALA A 67 TYR A 76 0 SHEET 2 AA4 4 TYR A 235 PRO A 253 -1 O TYR A 235 N TYR A 76 SHEET 3 AA4 4 PHE A 110 LEU A 127 -1 N GLU A 118 O LYS A 244 SHEET 4 AA4 4 TYR A 193 GLY A 194 -1 O TYR A 193 N ILE A 113 SHEET 1 AA5 4 ALA A 180 ILE A 184 0 SHEET 2 AA5 4 PHE A 110 LEU A 127 -1 N SER A 117 O ILE A 184 SHEET 3 AA5 4 TYR A 235 PRO A 253 -1 O LYS A 244 N GLU A 118 SHEET 4 AA5 4 ARG C 39 VAL C 40 -1 O VAL C 40 N ALA A 250 SHEET 1 AA6 4 PHE A 90 THR A 94 0 SHEET 2 AA6 4 ASN A 221 VAL A 226 -1 O LEU A 222 N TRP A 93 SHEET 3 AA6 4 THR A 142 VAL A 148 -1 N MET A 146 O CYS A 223 SHEET 4 AA6 4 SER A 170 LYS A 174 -1 O PHE A 173 N LEU A 143 SHEET 1 AA7 2 LEU B 14 LEU B 18 0 SHEET 2 AA7 2 SER B 21 THR B 25 -1 O SER B 21 N LEU B 18 SHEET 1 AA8 5 CYS B 32 CYS B 33 0 SHEET 2 AA8 5 SER B 185 LEU B 190 1 O MET B 189 N CYS B 32 SHEET 3 AA8 5 HIS B 99 GLN B 111 -1 N CYS B 108 O ILE B 188 SHEET 4 AA8 5 VAL B 226 LEU B 242 -1 O THR B 229 N GLN B 111 SHEET 5 AA8 5 TYR B 64 THR B 65 -1 N TYR B 64 O ILE B 232 SHEET 1 AA9 5 CYS B 32 CYS B 33 0 SHEET 2 AA9 5 SER B 185 LEU B 190 1 O MET B 189 N CYS B 32 SHEET 3 AA9 5 HIS B 99 GLN B 111 -1 N CYS B 108 O ILE B 188 SHEET 4 AA9 5 VAL B 226 LEU B 242 -1 O THR B 229 N GLN B 111 SHEET 5 AA9 5 VAL B 69 TRP B 71 -1 N VAL B 69 O ILE B 228 SHEET 1 AB1 5 GLY B 153 VAL B 154 0 SHEET 2 AB1 5 TRP B 78 LYS B 81 -1 N TRP B 79 O GLY B 153 SHEET 3 AB1 5 TRP B 207 ASN B 218 -1 O ILE B 211 N TRP B 78 SHEET 4 AB1 5 GLN B 119 PRO B 128 -1 N VAL B 125 O ALA B 210 SHEET 5 AB1 5 HIS B 175 ASN B 179 -1 O GLN B 176 N VAL B 124 SHEET 1 AB2 4 LEU C 80 PRO C 85 0 SHEET 2 AB2 4 TYR C 191 ILE C 201 -1 O VAL C 192 N ILE C 84 SHEET 3 AB2 4 THR C 126 THR C 134 -1 N THR C 126 O ILE C 201 SHEET 4 AB2 4 THR C 151 ASP C 156 -1 O THR C 151 N TYR C 133 SHEET 1 AB3 3 ARG C 176 MET C 177 0 SHEET 2 AB3 3 TYR C 106 SER C 110 -1 N TRP C 109 O ARG C 176 SHEET 3 AB3 3 SER C 223 MET C 227 -1 O SER C 223 N SER C 110 CISPEP 1 ALA A 275 PRO A 276 0 3.55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 6392 6393 6394 CONECT 6393 6392 CONECT 6394 6392 6395 6396 CONECT 6395 6394 CONECT 6396 6394 6397 6398 CONECT 6397 6396 CONECT 6398 6396 6399 CONECT 6399 6398 6400 CONECT 6400 6399 6401 CONECT 6401 6400 6402 CONECT 6402 6401 6403 CONECT 6403 6402 6404 CONECT 6404 6403 6405 CONECT 6405 6404 6406 CONECT 6406 6405 6407 CONECT 6407 6406 6408 CONECT 6408 6407 6409 CONECT 6409 6408 6410 CONECT 6410 6409 6411 CONECT 6411 6410 6412 CONECT 6412 6411 MASTER 314 0 1 19 48 0 0 6 6408 4 21 64 END