HEADER HYDROLASE 27-AUG-24 9DCQ TITLE BACTEROIDES CELLULOSYLITICUS GH13_46 (BCGH13A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA AMYLASE, CATALYTIC DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES CELLULOSILYTICUS; SOURCE 3 ORGANISM_TAXID: 537012; SOURCE 4 STRAIN: DSM 14838; SOURCE 5 GENE: BACCELL_05441; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GH13, GH13_46, STARCH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.A.BROWN,N.M.KOROPATKIN REVDAT 1 18-MAR-26 9DCQ 0 JRNL AUTH H.A.BROWN,A.L.MORRIS,N.M.KOROPATKIN JRNL TITL BCGH13_46 FROM BACTEROIDES CELLULOSILYTICUS DSM 14838 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2519 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4984 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4600 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6719 ; 1.676 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10563 ; 1.274 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ; 7.850 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 278 ;34.261 ;23.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 806 ;18.152 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.818 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5615 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1175 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2348 ; 2.834 ; 2.994 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2347 ; 2.833 ; 2.993 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2930 ; 4.486 ; 4.479 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2931 ; 4.486 ; 4.480 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2635 ; 3.004 ; 3.265 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2636 ; 3.003 ; 3.265 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3786 ; 4.783 ; 4.726 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5641 ; 7.080 ;33.238 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5642 ; 7.079 ;33.243 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9DCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 OR 2.1 M SODIUM/POTASSIUM REMARK 280 PHOSPHATE, 50MM NACL, PH 6.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 127.01500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.13000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 127.01500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 39.13000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 127.01500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 39.13000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 127.01500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.13000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 127.01500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.13000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 127.01500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 39.13000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 127.01500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 39.13000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 127.01500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 127.01500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.13000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 254.03000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 PHE A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 CYS A 16 REMARK 465 GLN A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 PHE A 20 REMARK 465 ALA A 21 REMARK 465 LYS A 22 REMARK 465 GLN A 23 REMARK 465 ILE A 24 REMARK 465 MET A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 LEU A 30 REMARK 465 ILE A 31 REMARK 465 GLU A 32 REMARK 465 TYR A 33 REMARK 465 SER A 34 REMARK 465 LYS A 35 REMARK 465 PHE A 36 REMARK 465 GLU A 37 REMARK 465 SER A 38 REMARK 465 SER A 39 REMARK 465 ILE A 40 REMARK 465 ILE A 41 REMARK 465 PRO A 42 REMARK 465 SER A 43 REMARK 465 GLN A 44 REMARK 465 ASP A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 TRP A 49 REMARK 465 LEU A 50 REMARK 465 SER A 51 REMARK 465 SER A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 SER A 55 REMARK 465 GLY A 56 REMARK 465 LYS A 57 REMARK 465 LYS A 58 REMARK 465 GLY A 135 REMARK 465 LYS A 136 REMARK 465 ARG A 137 REMARK 465 THR A 623 REMARK 465 SER A 624 REMARK 465 VAL A 634 REMARK 465 SER A 635 REMARK 465 LEU A 636 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 418 CG CD CE NZ REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 LYS A 535 CG CD CE NZ REMARK 470 ILE A 539 CG1 CG2 CD1 REMARK 470 LYS A 573 CG CD CE NZ REMARK 470 ASP A 593 CG OD1 OD2 REMARK 470 LYS A 606 CG CD CE NZ REMARK 470 LYS A 616 CG CD CE NZ REMARK 470 ASP A 621 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 633 O HOH A 801 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 379 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 60 62.79 -113.46 REMARK 500 LYS A 64 172.51 179.33 REMARK 500 TRP A 70 -160.32 -117.95 REMARK 500 ASN A 87 13.39 55.07 REMARK 500 PRO A 125 170.61 -50.19 REMARK 500 PHE A 172 -69.77 -90.57 REMARK 500 ASN A 191 106.46 -162.00 REMARK 500 CYS A 280 -167.76 -107.86 REMARK 500 ALA A 419 167.27 159.88 REMARK 500 ASP A 464 77.11 -155.10 REMARK 500 ALA A 538 -85.81 -57.82 REMARK 500 ASN A 583 52.68 33.31 REMARK 500 CYS A 592 -84.08 -125.59 REMARK 500 ASP A 593 -76.74 -90.67 REMARK 500 ASN A 605 49.74 -96.82 REMARK 500 VAL A 618 -66.82 -105.20 REMARK 500 ASN A 631 28.74 12.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 174 OD1 REMARK 620 2 ASP A 176 O 83.3 REMARK 620 3 ASN A 179 OD1 149.5 68.4 REMARK 620 4 ASP A 180 OD1 87.5 94.3 105.3 REMARK 620 5 GLY A 200 O 73.4 153.3 130.1 97.5 REMARK 620 6 ASP A 202 OD1 76.0 78.8 87.1 162.7 83.0 REMARK 620 7 HOH A 831 O 142.1 134.6 67.1 88.8 69.7 107.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 278 OD1 REMARK 620 2 THR A 326 O 157.5 REMARK 620 3 ASP A 336 OD1 79.8 110.6 REMARK 620 4 ASP A 336 OD2 126.6 72.0 51.2 REMARK 620 5 TYR A 371 O 75.1 85.8 142.9 157.8 REMARK 620 6 HOH A 821 O 69.1 132.2 73.9 77.1 120.0 REMARK 620 7 HOH A 895 O 89.3 77.1 68.1 90.4 84.6 139.1 REMARK 620 8 HOH A 957 O 115.4 75.1 126.9 85.4 88.8 66.8 151.8 REMARK 620 N 1 2 3 4 5 6 7 DBREF 9DCQ A 1 652 UNP E2NM96 E2NM96_9BACE 1 652 SEQRES 1 A 652 MET MET LYS THR LYS THR LEU PHE LEU SER PHE ALA LEU SEQRES 2 A 652 LEU LEU CYS GLN LEU GLY PHE ALA LYS GLN ILE MET SER SEQRES 3 A 652 SER GLU ARG LEU ILE GLU TYR SER LYS PHE GLU SER SER SEQRES 4 A 652 ILE ILE PRO SER GLN ASP ASN SER ASP TRP LEU SER SER SEQRES 5 A 652 HIS HIS SER GLY LYS LYS ASN GLU LYS ILE GLU LYS VAL SEQRES 6 A 652 GLU PRO ALA PHE TRP TRP SER GLY MET LYS ASN THR ARG SEQRES 7 A 652 LEU GLN LEU MET VAL TYR GLY SER ASN ILE ALA THR TYR SEQRES 8 A 652 LYS PRO GLU ILE ASN HIS PRO GLY VAL VAL LEU LYS GLU SEQRES 9 A 652 VAL CYS PRO MET GLU SER PRO ASN TYR LEU VAL LEU TYR SEQRES 10 A 652 LEU ASP VAL LYS ASP ALA ALA PRO GLY LYS PHE GLN ILE SEQRES 11 A 652 GLU PHE VAL LYS GLY LYS ARG LYS LEU ASN TYR THR TYR SEQRES 12 A 652 GLU LEU LYS GLU ARG GLN ARG LYS GLY GLU ASP ARG ILE SEQRES 13 A 652 GLY PHE ASN SER SER ASP VAL VAL TYR LEU LEU MET PRO SEQRES 14 A 652 ASP ARG PHE ALA ASN GLY ASP GLU SER ASN ASP TYR ILE SEQRES 15 A 652 GLN MET LYS TYR PRO TYR THR VAL ASN ARG ARG ASP VAL SEQRES 16 A 652 ASN ALA ARG HIS GLY GLY ASP LEU ALA GLY ILE MET GLN SEQRES 17 A 652 HIS LEU ASP TYR LEU ASP SER LEU GLY ILE THR ALA ILE SEQRES 18 A 652 TRP THR THR PRO VAL LEU GLU ASN ASP MET GLY GLU GLY SEQRES 19 A 652 SER TYR HIS GLY TYR ALA ALA THR ASP TYR TYR LYS ILE SEQRES 20 A 652 ASP PRO ARG LEU GLY THR ASN GLU ASP TYR VAL ARG LEU SEQRES 21 A 652 ALA GLU SER MET HIS GLN ARG GLY MET LYS LEU ILE MET SEQRES 22 A 652 ASP MET VAL PHE ASN HIS CYS GLY THR ASN HIS PRO TRP SEQRES 23 A 652 LEU LEU ASP PRO PRO MET GLN ASN TRP PHE ASN ASN SER SEQRES 24 A 652 HIS LYS TYR ILE GLU THR ASN HIS ASN LYS THR VAL PHE SEQRES 25 A 652 PHE ASP PRO TYR ALA SER ASP ILE ASP LYS GLN GLU LEU SEQRES 26 A 652 THR ASP GLY TRP PHE VAL PRO THR MET PRO ASP LEU ASN SEQRES 27 A 652 GLN ARG ASN ARG PHE LEU ALA ASP TYR LEU ILE GLN ASN SEQRES 28 A 652 SER ILE TRP TRP ILE GLU TYR ALA ASP LEU ASP GLY ILE SEQRES 29 A 652 ARG GLN ASP THR TYR VAL TYR PRO ASP PRO ASP MET MET SEQRES 30 A 652 VAL ARG TRP CYS LYS GLU VAL PHE GLU GLU TYR PRO ASN SEQRES 31 A 652 PHE ASN ILE VAL GLY GLU VAL MET ILE PRO ASN ASN PRO SEQRES 32 A 652 VAL GLY THR ALA TYR TRP GLN GLN ASN SER VAL LEU ASN SEQRES 33 A 652 GLU LYS ALA ASN THR LYS LEU LYS SER VAL MET ASP PHE SEQRES 34 A 652 ARG LEU ARG THR ILE ALA GLY LYS VAL PHE HIS GLU GLU SEQRES 35 A 652 THR SER TRP ASP THR GLY LEU GLN LEU LEU PHE GLU HIS SEQRES 36 A 652 PHE ALA TYR ASP PHE CYS TYR PRO ASP ILE ASN ASN VAL SEQRES 37 A 652 MET ARG LEU LEU GLU ASN HIS ASP THR ASP ARG PHE LEU SEQRES 38 A 652 LEU GLU THR PRO GLU ASN LEU ASN ALA TYR LYS GLN ALA SEQRES 39 A 652 VAL THR LEU LEU LEU THR ILE PRO GLY ILE PRO GLN LEU SEQRES 40 A 652 TYR TYR GLY GLN GLU LEU LEU MET SER GLY SER ASN LYS SEQRES 41 A 652 ILE ASP PHE GLY TYR VAL ARG PRO ASP MET PRO GLY GLY SEQRES 42 A 652 TRP LYS GLY ASP ALA ILE SER VAL PHE GLN GLU ASN GLY SEQRES 43 A 652 ARG THR ALA MET GLN GLN GLU ALA PHE ASP PHE MET SER SEQRES 44 A 652 LYS LEU LEU HIS TRP ARG LYS GLY ASN ASP VAL ILE SER SEQRES 45 A 652 LYS GLY LYS MET LYS HIS PHE MET PRO ARG ASN ASN VAL SEQRES 46 A 652 TYR VAL TYR GLU ARG SER CYS ASP GLY ARG SER ILE LEU SEQRES 47 A 652 VAL ILE MET ASN GLY ILE ASN LYS GLU VAL ASP LEU ASP SEQRES 48 A 652 LEU ALA PRO TYR LYS GLU VAL ILE GLY ASP LYS THR SER SEQRES 49 A 652 SER LYS ASN VAL LEU THR ASN GLY ASN VAL SER LEU GLY SEQRES 50 A 652 ARG ILE LEU HIS LEU GLN PRO LYS GLU VAL LEU VAL LEU SEQRES 51 A 652 GLU LEU HET CA A 701 1 HET CA A 702 1 HET PO4 A 703 5 HET PO4 A 704 5 HET PO4 A 705 5 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 4 HET EDO A 709 4 HET EDO A 710 4 HET EDO A 711 4 HET EDO A 712 4 HET EDO A 713 4 HET EDO A 714 4 HET EDO A 715 4 HET EDO A 716 4 HET EDO A 717 4 HET EDO A 718 4 HET EDO A 719 4 HET EDO A 720 4 HET EDO A 721 4 HET EDO A 722 4 HET EDO A 723 4 HET EDO A 724 4 HET EDO A 725 4 HET EDO A 726 4 HET EDO A 727 4 HET EDO A 728 4 HET EDO A 729 4 HET EDO A 730 4 HET EDO A 731 4 HET EDO A 732 4 HET EDO A 733 4 HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 2(CA 2+) FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 EDO 28(C2 H6 O2) FORMUL 35 HOH *271(H2 O) HELIX 1 AA1 ASN A 87 TYR A 91 5 5 HELIX 2 AA2 LYS A 151 ARG A 155 5 5 HELIX 3 AA3 MET A 168 PHE A 172 5 5 HELIX 4 AA4 ASP A 176 ASP A 180 5 5 HELIX 5 AA5 ASP A 202 GLN A 208 1 7 HELIX 6 AA6 HIS A 209 GLY A 217 1 9 HELIX 7 AA7 THR A 253 GLN A 266 1 14 HELIX 8 AA8 SER A 318 ASP A 327 1 10 HELIX 9 AA9 ASN A 341 ASP A 360 1 20 HELIX 10 AB1 ASP A 373 TYR A 388 1 16 HELIX 11 AB2 ASN A 402 GLN A 410 1 9 HELIX 12 AB3 ASP A 428 HIS A 440 1 13 HELIX 13 AB4 GLY A 448 TYR A 458 1 11 HELIX 14 AB5 ASP A 459 TYR A 462 5 4 HELIX 15 AB6 ASP A 464 ASN A 466 5 3 HELIX 16 AB7 LEU A 488 ILE A 501 1 14 HELIX 17 AB8 GLY A 510 LEU A 514 5 5 HELIX 18 AB9 ASP A 522 ARG A 527 5 6 HELIX 19 AC1 GLN A 543 ARG A 547 5 5 HELIX 20 AC2 THR A 548 LYS A 566 1 19 HELIX 21 AC3 ASN A 568 GLY A 574 1 7 HELIX 22 AC4 ALA A 613 LYS A 616 5 4 SHEET 1 AA1 4 LYS A 64 GLU A 66 0 SHEET 2 AA1 4 ARG A 78 TYR A 84 -1 O TYR A 84 N LYS A 64 SHEET 3 AA1 4 TYR A 113 ASP A 119 -1 O LEU A 114 N VAL A 83 SHEET 4 AA1 4 VAL A 101 PRO A 107 -1 N CYS A 106 O VAL A 115 SHEET 1 AA2 4 TRP A 70 TRP A 71 0 SHEET 2 AA2 4 LEU A 139 LYS A 146 1 O LYS A 146 N TRP A 70 SHEET 3 AA2 4 GLY A 126 VAL A 133 -1 N PHE A 132 O LEU A 139 SHEET 4 AA2 4 LYS A 92 GLU A 94 -1 N GLU A 94 O GLU A 131 SHEET 1 AA3 8 ILE A 393 GLY A 395 0 SHEET 2 AA3 8 GLY A 363 GLN A 366 1 N ILE A 364 O VAL A 394 SHEET 3 AA3 8 LYS A 270 MET A 275 1 N MET A 275 O ARG A 365 SHEET 4 AA3 8 ALA A 220 THR A 223 1 N ILE A 221 O LYS A 270 SHEET 5 AA3 8 VAL A 164 LEU A 167 1 N TYR A 165 O TRP A 222 SHEET 6 AA3 8 ILE A 504 TYR A 508 1 O LEU A 507 N VAL A 164 SHEET 7 AA3 8 VAL A 468 ARG A 470 1 N ARG A 470 O GLN A 506 SHEET 8 AA3 8 VAL A 426 MET A 427 1 N VAL A 426 O MET A 469 SHEET 1 AA4 2 LEU A 227 GLU A 228 0 SHEET 2 AA4 2 ASP A 243 ILE A 247 -1 O LYS A 246 N GLU A 228 SHEET 1 AA5 5 LYS A 575 ARG A 582 0 SHEET 2 AA5 5 VAL A 585 SER A 591 -1 O GLU A 589 N LYS A 577 SHEET 3 AA5 5 SER A 596 ASN A 602 -1 O VAL A 599 N TYR A 588 SHEET 4 AA5 5 VAL A 647 LEU A 652 -1 O LEU A 648 N ILE A 600 SHEET 5 AA5 5 LYS A 626 ASN A 627 -1 N LYS A 626 O GLU A 651 SHEET 1 AA6 2 VAL A 608 ASP A 611 0 SHEET 2 AA6 2 ILE A 639 LEU A 642 -1 O LEU A 640 N LEU A 610 LINK OD1 ASN A 174 CA CA A 701 1555 1555 2.51 LINK O ASP A 176 CA CA A 701 1555 1555 2.55 LINK OD1 ASN A 179 CA CA A 701 1555 1555 2.36 LINK OD1 ASP A 180 CA CA A 701 1555 1555 2.30 LINK O GLY A 200 CA CA A 701 1555 1555 2.41 LINK OD1 ASP A 202 CA CA A 701 1555 1555 2.29 LINK OD1 ASN A 278 CA CA A 702 1555 1555 2.37 LINK O THR A 326 CA CA A 702 1555 1555 2.29 LINK OD1 ASP A 336 CA CA A 702 1555 1555 2.36 LINK OD2 ASP A 336 CA CA A 702 1555 1555 2.71 LINK O TYR A 371 CA CA A 702 1555 1555 2.36 LINK CA CA A 701 O HOH A 831 1555 1555 2.63 LINK CA CA A 702 O HOH A 821 1555 1555 2.49 LINK CA CA A 702 O HOH A 895 1555 1555 2.42 LINK CA CA A 702 O HOH A 957 1555 1555 2.47 CISPEP 1 GLU A 66 PRO A 67 0 -5.58 CRYST1 254.030 254.030 78.260 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012778 0.00000 CONECT 909 4761 CONECT 918 4761 CONECT 944 4761 CONECT 952 4761 CONECT 1121 4761 CONECT 1132 4761 CONECT 1737 4762 CONECT 2154 4762 CONECT 2237 4762 CONECT 2238 4762 CONECT 2540 4762 CONECT 4761 909 918 944 952 CONECT 4761 1121 1132 4920 CONECT 4762 1737 2154 2237 2238 CONECT 4762 2540 4910 4984 5046 CONECT 4763 4764 4765 4766 4767 CONECT 4764 4763 CONECT 4765 4763 CONECT 4766 4763 CONECT 4767 4763 CONECT 4768 4769 4770 4771 4772 CONECT 4769 4768 CONECT 4770 4768 CONECT 4771 4768 CONECT 4772 4768 CONECT 4773 4774 4775 4776 4777 CONECT 4774 4773 CONECT 4775 4773 CONECT 4776 4773 CONECT 4777 4773 CONECT 4778 4779 4780 CONECT 4779 4778 CONECT 4780 4778 4781 CONECT 4781 4780 CONECT 4782 4783 4784 CONECT 4783 4782 CONECT 4784 4782 4785 CONECT 4785 4784 CONECT 4786 4787 4788 CONECT 4787 4786 CONECT 4788 4786 4789 CONECT 4789 4788 CONECT 4790 4791 4792 CONECT 4791 4790 CONECT 4792 4790 4793 CONECT 4793 4792 CONECT 4794 4795 4796 CONECT 4795 4794 CONECT 4796 4794 4797 CONECT 4797 4796 CONECT 4798 4799 4800 CONECT 4799 4798 CONECT 4800 4798 4801 CONECT 4801 4800 CONECT 4802 4803 4804 CONECT 4803 4802 CONECT 4804 4802 4805 CONECT 4805 4804 CONECT 4806 4807 4808 CONECT 4807 4806 CONECT 4808 4806 4809 CONECT 4809 4808 CONECT 4810 4811 4812 CONECT 4811 4810 CONECT 4812 4810 4813 CONECT 4813 4812 CONECT 4814 4815 4816 CONECT 4815 4814 CONECT 4816 4814 4817 CONECT 4817 4816 CONECT 4818 4819 4820 CONECT 4819 4818 CONECT 4820 4818 4821 CONECT 4821 4820 CONECT 4822 4823 4824 CONECT 4823 4822 CONECT 4824 4822 4825 CONECT 4825 4824 CONECT 4826 4827 4828 CONECT 4827 4826 CONECT 4828 4826 4829 CONECT 4829 4828 CONECT 4830 4831 4832 CONECT 4831 4830 CONECT 4832 4830 4833 CONECT 4833 4832 CONECT 4834 4835 4836 CONECT 4835 4834 CONECT 4836 4834 4837 CONECT 4837 4836 CONECT 4838 4839 4840 CONECT 4839 4838 CONECT 4840 4838 4841 CONECT 4841 4840 CONECT 4842 4843 4844 CONECT 4843 4842 CONECT 4844 4842 4845 CONECT 4845 4844 CONECT 4846 4847 4848 CONECT 4847 4846 CONECT 4848 4846 4849 CONECT 4849 4848 CONECT 4850 4851 4852 CONECT 4851 4850 CONECT 4852 4850 4853 CONECT 4853 4852 CONECT 4854 4855 4856 CONECT 4855 4854 CONECT 4856 4854 4857 CONECT 4857 4856 CONECT 4858 4859 4860 CONECT 4859 4858 CONECT 4860 4858 4861 CONECT 4861 4860 CONECT 4862 4863 4864 CONECT 4863 4862 CONECT 4864 4862 4865 CONECT 4865 4864 CONECT 4866 4867 4868 CONECT 4867 4866 CONECT 4868 4866 4869 CONECT 4869 4868 CONECT 4870 4871 4872 CONECT 4871 4870 CONECT 4872 4870 4873 CONECT 4873 4872 CONECT 4874 4875 4876 CONECT 4875 4874 CONECT 4876 4874 4877 CONECT 4877 4876 CONECT 4878 4879 4880 CONECT 4879 4878 CONECT 4880 4878 4881 CONECT 4881 4880 CONECT 4882 4883 4884 CONECT 4883 4882 CONECT 4884 4882 4885 CONECT 4885 4884 CONECT 4886 4887 4888 CONECT 4887 4886 CONECT 4888 4886 4889 CONECT 4889 4888 CONECT 4910 4762 CONECT 4920 4761 CONECT 4984 4762 CONECT 5046 4762 MASTER 475 0 33 22 25 0 0 6 5138 1 146 51 END