HEADER ANTIVIRAL PROTEIN 30-AUG-24 9DFN TITLE X-RAY CRYSTAL STRUCTURE OF THE SECOND VIPERIN-LIKE ENZYME FROM TITLE 2 TRICHODERMA VIRENS WITH BOUND CTP AND SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RADICAL SAM CORE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHODERMA VIRENS; SOURCE 3 ORGANISM_TAXID: 413071; SOURCE 4 STRAIN: GV29-8; SOURCE 5 GENE: TRIVIDRAFT_46896; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS VIPERIN, 4FE-4S CLUSTER, RADICAL SAM, DDHCTP, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.C.LACHOWICZ,T.G.GROVE,J.B.BONANNO REVDAT 1 19-FEB-25 9DFN 0 JRNL AUTH J.C.LACHOWICZ,S.GRUDMAN,J.B.BONANNO,A.FISER,T.L.GROVE JRNL TITL STRUCTURAL INSIGHTS FROM ACTIVE SITE VARIANTS AND B-8 LOOP JRNL TITL 2 INTERACTIONS IN VIPERIN-LIKE ENZYMES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 2.99000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2468 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2310 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3340 ; 1.574 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5323 ; 0.558 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.632 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 19 ; 8.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;13.164 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2880 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1146 ; 1.410 ; 1.652 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1146 ; 1.410 ; 1.652 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1432 ; 1.977 ; 2.961 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1433 ; 1.977 ; 2.960 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 2.772 ; 1.920 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1311 ; 2.775 ; 1.923 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1891 ; 4.270 ; 3.377 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2985 ; 5.758 ;19.270 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2843 ; 5.434 ;17.140 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9DFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920105 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54980 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 32.576 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.24600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 6.5), 20% (W/V) PGG REMARK 280 MME 5K, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.40400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.84600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.91900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.84600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.40400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.91900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 VAL A 18 REMARK 465 ASP A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 THR A 22 REMARK 465 GLU A 23 REMARK 465 ASN A 24 REMARK 465 LEU A 25 REMARK 465 TYR A 26 REMARK 465 PHE A 27 REMARK 465 GLN A 28 REMARK 465 ASN A 312 REMARK 465 GLU A 313 REMARK 465 GLN A 314 REMARK 465 VAL A 315 REMARK 465 GLU A 316 REMARK 465 ALA A 317 REMARK 465 CYS A 318 REMARK 465 SER A 319 REMARK 465 THR A 320 REMARK 465 GLY A 321 REMARK 465 MET A 322 REMARK 465 SER A 323 REMARK 465 GLU A 324 REMARK 465 LYS A 325 REMARK 465 LEU A 326 REMARK 465 VAL A 327 REMARK 465 TRP A 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 813 O HOH A 837 1.95 REMARK 500 O HOH A 689 O HOH A 746 2.16 REMARK 500 O HOH A 761 O HOH A 774 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 124 CD GLU A 124 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 66 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 SF4 A 401 S1 113.9 REMARK 620 3 SF4 A 401 S3 124.6 104.7 REMARK 620 4 SF4 A 401 S4 99.5 110.1 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 SF4 A 401 S2 114.7 REMARK 620 3 SF4 A 401 S3 108.9 105.6 REMARK 620 4 SF4 A 401 S4 115.7 106.6 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 SF4 A 401 S1 116.7 REMARK 620 3 SF4 A 401 S2 120.4 103.7 REMARK 620 4 SF4 A 401 S3 104.5 103.1 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 402 N REMARK 620 2 SF4 A 401 S1 86.4 REMARK 620 3 SF4 A 401 S2 158.6 97.3 REMARK 620 4 SF4 A 401 S4 96.1 108.3 102.6 REMARK 620 5 SAM A 402 O 73.3 151.4 94.9 94.0 REMARK 620 N 1 2 3 4 DBREF 9DFN A 31 328 UNP G9N0G3 G9N0G3_HYPVG 31 328 SEQADV 9DFN MET A 8 UNP G9N0G3 INITIATING METHIONINE SEQADV 9DFN HIS A 9 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN HIS A 10 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN HIS A 11 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN HIS A 12 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN HIS A 13 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN HIS A 14 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN SER A 15 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN SER A 16 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN GLY A 17 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN VAL A 18 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN ASP A 19 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN LEU A 20 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN GLY A 21 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN THR A 22 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN GLU A 23 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN ASN A 24 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN LEU A 25 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN TYR A 26 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN PHE A 27 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN GLN A 28 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN SER A 29 UNP G9N0G3 EXPRESSION TAG SEQADV 9DFN MET A 30 UNP G9N0G3 EXPRESSION TAG SEQRES 1 A 321 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 321 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLN ILE SEQRES 3 A 321 PRO VAL SER VAL ASN TYR PHE PHE THR ARG LYS CYS ASN SEQRES 4 A 321 LYS SER CYS GLY PHE CYS PHE HIS THR ALA LYS THR SER SEQRES 5 A 321 HIS MET GLU ASP ILE SER ARG ALA LYS ARG GLY LEU GLN SEQRES 6 A 321 LEU LEU GLN ARG ALA GLY MET LYS LYS ILE ASN PHE ALA SEQRES 7 A 321 GLY GLY GLU PRO PHE LEU TYR PRO LYS PHE LEU GLY GLU SEQRES 8 A 321 LEU VAL ASP PHE CYS LYS GLU ASP LEU HIS LEU GLU SER SEQRES 9 A 321 VAL SER ILE ILE THR ASN GLY SER LEU VAL ARG GLU GLU SEQRES 10 A 321 TRP VAL ARG LYS HIS ALA LYS ASN ILE ASP ILE LEU ALA SEQRES 11 A 321 CYS SER CYS ASP SER PHE ASP GLU ASN MET ASN ILE GLU SEQRES 12 A 321 ILE GLY ARG GLY THR GLY ASN GLN VAL GLU ILE LEU TYR SEQRES 13 A 321 ARG ILE ALA LYS TRP CYS ARG LYS ASN GLU ILE LYS PHE SEQRES 14 A 321 LYS LEU ASN THR VAL VAL THR ARG LEU ASN TYR GLU GLU SEQRES 15 A 321 ASP MET ASN GLU HIS ILE ASP THR LEU GLN PRO PHE ARG SEQRES 16 A 321 TRP LYS VAL PHE GLN VAL LEU ILE VAL GLU GLY GLU ASN SEQRES 17 A 321 ASP SER GLU LYS THR LEU ARG ASP ALA ARG ARG PHE THR SEQRES 18 A 321 ILE SER ASP LYS GLN PHE GLU VAL PHE CYS SER LYS HIS SEQRES 19 A 321 ARG HIS HIS LYS SER PHE VAL ALA GLU PRO ASN ARG LEU SEQRES 20 A 321 MET ALA SER SER TYR LEU LEU VAL ASP GLU TYR MET ARG SEQRES 21 A 321 PHE ILE ASP LYS ASP GLY ASN LYS LEU THR LYS SER ILE SEQRES 22 A 321 LEU ASP VAL GLY VAL GLU ALA ALA MET LYS GLU ILE LYS SEQRES 23 A 321 TRP ASP VAL ASP ALA PHE GLN GLU ARG GLY GLY VAL TYR SEQRES 24 A 321 GLU TRP THR LYS GLU ASN GLU GLN VAL GLU ALA CYS SER SEQRES 25 A 321 THR GLY MET SER GLU LYS LEU VAL TRP HET SF4 A 401 8 HET SAM A 402 27 HET CTP A 403 29 HET CL A 404 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SAM S-ADENOSYLMETHIONINE HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 CTP C9 H16 N3 O14 P3 FORMUL 5 CL CL 1- FORMUL 6 HOH *360(H2 O) HELIX 1 AA1 ASP A 63 ALA A 77 1 15 HELIX 2 AA2 GLU A 88 LEU A 91 5 4 HELIX 3 AA3 TYR A 92 ASP A 106 1 15 HELIX 4 AA4 ARG A 122 ALA A 130 1 9 HELIX 5 AA5 LYS A 131 ILE A 133 5 3 HELIX 6 AA6 ASP A 144 GLY A 152 1 9 HELIX 7 AA7 ASN A 157 ASN A 172 1 16 HELIX 8 AA8 MET A 191 GLN A 199 1 9 HELIX 9 AA9 ALA A 224 THR A 228 5 5 HELIX 10 AB1 SER A 230 ARG A 242 1 13 HELIX 11 AB2 PRO A 251 ALA A 256 1 6 HELIX 12 AB3 ILE A 280 LYS A 290 1 11 HELIX 13 AB4 ASP A 295 ARG A 302 1 8 SHEET 1 AA110 PHE A 247 GLU A 250 0 SHEET 2 AA110 ARG A 202 GLN A 207 1 N VAL A 205 O VAL A 248 SHEET 3 AA110 LYS A 175 VAL A 182 1 N VAL A 182 O PHE A 206 SHEET 4 AA110 ILE A 135 SER A 139 1 N LEU A 136 O LYS A 175 SHEET 5 AA110 SER A 111 THR A 116 1 N ILE A 114 O ALA A 137 SHEET 6 AA110 LYS A 81 ALA A 85 1 N ILE A 82 O SER A 113 SHEET 7 AA110 SER A 36 PHE A 40 1 N VAL A 37 O ASN A 83 SHEET 8 AA110 LEU A 261 VAL A 262 1 O VAL A 262 N ASN A 38 SHEET 9 AA110 ARG A 267 ASP A 270 -1 O ILE A 269 N LEU A 261 SHEET 10 AA110 LYS A 275 SER A 279 -1 O LYS A 275 N ASP A 270 LINK SG CYS A 45 FE2 SF4 A 401 1555 1555 2.22 LINK SG CYS A 49 FE1 SF4 A 401 1555 1555 2.28 LINK SG CYS A 52 FE4 SF4 A 401 1555 1555 2.25 LINK FE3 SF4 A 401 N SAM A 402 1555 1555 2.27 LINK FE3 SF4 A 401 O SAM A 402 1555 1555 2.22 CISPEP 1 GLY A 86 GLY A 87 0 20.39 CRYST1 36.808 57.838 157.692 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006341 0.00000