data_9DGM # _entry.id 9DGM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9DGM pdb_00009dgm 10.2210/pdb9dgm/pdb WWPDB D_1000288070 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-11-12 ? 2 'Structure model' 1 1 2025-12-24 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9DGM _pdbx_database_status.recvd_initial_deposition_date 2024-09-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email mao@purdue.edu _pdbx_contact_author.name_first Chengde _pdbx_contact_author.name_last Mao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7516-8666 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Koomullam, N.' 1 0009-0000-3495-8434 'Mao, C.' 2 0000-0001-7516-8666 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first e18174 _citation.page_last e18174 _citation.title 'Crystallographic Study of DNA T-Junction via Crystal Engineering.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202518174 _citation.pdbx_database_id_PubMed 41165523 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, X.' 1 ? primary 'Siraj, N.' 2 ? primary 'Sha, R.' 3 ? primary 'Mao, C.' 4 0000-0001-7516-8666 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*GP*CP*AP*GP*CP*CP*TP*GP*AP*AP*TP*AP*CP*T)-3') ; 4867.181 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3') ; 1825.216 1 ? ? ? ? 3 polymer syn 'DNA (58-MER)' 17869.389 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(*TP*GP*CP*GP*CP*TP*GP*T)-3') ; 2433.602 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DC)(DA)(DG)(DC)(DC)(DT)(DG)(DA)(DA)(DT)(DA)(DC)(DT)' CAGCAGCCTGAATACT A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DT)(DG)(DC)' GGCTGC B ? 3 polydeoxyribonucleotide no no ;(DC)(DT)(DG)(DC)(DG)(DA)(DG)(DT)(DA)(DT)(DT)(DC)(DA)(DC)(DC)(DG)(DG)(DC)(DC)(DG) (DC)(DG)(DG)(DA)(DC)(DA)(DA)(DC)(DT)(DT)(DT)(DT)(DG)(DT)(DT)(DG)(DT)(DC)(DC)(DG) (DC)(DG)(DG)(DC)(DG)(DC)(DA)(DG)(DC)(DC)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG) ; CTGCGAGTATTCACCGGCCGCGGACAACTTTTGTTGTCCGCGGCGCAGCCGGACAGCG C ? 4 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DG)(DC)(DT)(DG)(DT)' TGCGCTGT E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DA n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DT n 1 10 DG n 1 11 DA n 1 12 DA n 1 13 DT n 1 14 DA n 1 15 DC n 1 16 DT n 2 1 DG n 2 2 DG n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DC n 3 1 DC n 3 2 DT n 3 3 DG n 3 4 DC n 3 5 DG n 3 6 DA n 3 7 DG n 3 8 DT n 3 9 DA n 3 10 DT n 3 11 DT n 3 12 DC n 3 13 DA n 3 14 DC n 3 15 DC n 3 16 DG n 3 17 DG n 3 18 DC n 3 19 DC n 3 20 DG n 3 21 DC n 3 22 DG n 3 23 DG n 3 24 DA n 3 25 DC n 3 26 DA n 3 27 DA n 3 28 DC n 3 29 DT n 3 30 DT n 3 31 DT n 3 32 DT n 3 33 DG n 3 34 DT n 3 35 DT n 3 36 DG n 3 37 DT n 3 38 DC n 3 39 DC n 3 40 DG n 3 41 DC n 3 42 DG n 3 43 DG n 3 44 DC n 3 45 DG n 3 46 DC n 3 47 DA n 3 48 DG n 3 49 DC n 3 50 DC n 3 51 DG n 3 52 DG n 3 53 DA n 3 54 DC n 3 55 DA n 3 56 DG n 3 57 DC n 3 58 DG n 4 1 DT n 4 2 DG n 4 3 DC n 4 4 DG n 4 5 DC n 4 6 DT n 4 7 DG n 4 8 DT n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 16 'synthetic construct' ? 32630 ? 2 1 sample 1 6 'synthetic construct' ? 32630 ? 3 1 sample 1 58 'synthetic construct' ? 32630 ? 4 1 sample 1 8 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DC 15 15 15 DC DC A . n A 1 16 DT 16 16 16 DT DT A . n B 2 1 DG 1 9 9 DG DG B . n B 2 2 DG 2 10 10 DG DG B . n B 2 3 DC 3 11 11 DC DC B . n B 2 4 DT 4 12 12 DT DT B . n B 2 5 DG 5 13 13 DG DG B . n B 2 6 DC 6 14 14 DC DC B . n C 3 1 DC 1 1 1 DC DC C . n C 3 2 DT 2 2 2 DT DT C . n C 3 3 DG 3 3 3 DG DG C . n C 3 4 DC 4 4 4 DC DC C . n C 3 5 DG 5 5 5 DG DG C . n C 3 6 DA 6 6 6 DA DA C . n C 3 7 DG 7 7 7 DG DG C . n C 3 8 DT 8 8 8 DT DT C . n C 3 9 DA 9 9 9 DA DA C . n C 3 10 DT 10 10 10 DT DT C . n C 3 11 DT 11 11 11 DT DT C . n C 3 12 DC 12 12 12 DC DC C . n C 3 13 DA 13 13 13 DA DA C . n C 3 14 DC 14 14 14 DC DC C . n C 3 15 DC 15 15 15 DC DC C . n C 3 16 DG 16 16 16 DG DG C . n C 3 17 DG 17 17 17 DG DG C . n C 3 18 DC 18 18 18 DC DC C . n C 3 19 DC 19 19 19 DC DC C . n C 3 20 DG 20 20 20 DG DG C . n C 3 21 DC 21 21 21 DC DC C . n C 3 22 DG 22 22 22 DG DG C . n C 3 23 DG 23 23 23 DG DG C . n C 3 24 DA 24 24 24 DA DA C . n C 3 25 DC 25 25 25 DC DC C . n C 3 26 DA 26 26 26 DA DA C . n C 3 27 DA 27 27 27 DA DA C . n C 3 28 DC 28 28 28 DC DC C . n C 3 29 DT 29 29 ? ? ? C . n C 3 30 DT 30 30 ? ? ? C . n C 3 31 DT 31 31 ? ? ? C . n C 3 32 DT 32 32 ? ? ? C . n C 3 33 DG 33 33 33 DG DG C . n C 3 34 DT 34 34 34 DT DT C . n C 3 35 DT 35 35 35 DT DT C . n C 3 36 DG 36 36 36 DG DG C . n C 3 37 DT 37 37 37 DT DT C . n C 3 38 DC 38 38 38 DC DC C . n C 3 39 DC 39 39 39 DC DC C . n C 3 40 DG 40 40 40 DG DG C . n C 3 41 DC 41 41 41 DC DC C . n C 3 42 DG 42 42 42 DG DG C . n C 3 43 DG 43 43 43 DG DG C . n C 3 44 DC 44 44 44 DC DC C . n C 3 45 DG 45 45 45 DG DG C . n C 3 46 DC 46 46 46 DC DC C . n C 3 47 DA 47 47 47 DA DA C . n C 3 48 DG 48 48 48 DG DG C . n C 3 49 DC 49 49 49 DC DC C . n C 3 50 DC 50 50 50 DC DC C . n C 3 51 DG 51 51 51 DG DG C . n C 3 52 DG 52 52 52 DG DG C . n C 3 53 DA 53 53 53 DA DA C . n C 3 54 DC 54 54 54 DC DC C . n C 3 55 DA 55 55 55 DA DA C . n C 3 56 DG 56 56 56 DG DG C . n C 3 57 DC 57 57 57 DC DC C . n C 3 58 DG 58 58 58 DG DG C . n D 4 1 DT 1 1 1 DT DT E . n D 4 2 DG 2 2 2 DG DG E . n D 4 3 DC 3 3 3 DC DC E . n D 4 4 DG 4 4 4 DG DG E . n D 4 5 DC 5 5 5 DC DC E . n D 4 6 DT 6 6 6 DT DT E . n D 4 7 DG 7 7 7 DG DG E . n D 4 8 DT 8 8 8 DT DT E . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DT 34 ? C7 ? C DT 34 C7 2 1 Y 1 C DT 35 ? C7 ? C DT 35 C7 3 1 Y 1 C DT 37 ? C7 ? C DT 37 C7 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9DGM _cell.details ? _cell.formula_units_Z ? _cell.length_a 167.490 _cell.length_a_esd ? _cell.length_b 167.490 _cell.length_b_esd ? _cell.length_c 78.099 _cell.length_c_esd ? _cell.volume 1897378.041 _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9DGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9DGM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 7.72 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 84.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;DNA strands mixed with TAE/Mg2+ and 0.001 M Magnesium chloride hexahydrate, 0.005 M Tris hydrochloride, pH=7.5, 0.16 M Ammonium sulfate, 0.23 M sucrose and crystallized against (NH4)2SO4 ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-08-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU R-AXIS IV' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 157.16 _reflns.entry_id 9DGM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 6.63 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1462 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.25 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.053 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 6.63 _reflns_shell.d_res_low 6.98 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 135 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.812 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 314.86 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9DGM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 6.63 _refine.ls_d_res_low 34.38 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1456 _refine.ls_number_reflns_R_free 146 _refine.ls_number_reflns_R_work 1310 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.49 _refine.ls_percent_reflns_R_free 10.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1790 _refine.ls_R_factor_R_free 0.2297 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1729 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.98 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.6808 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.7043 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 6.63 _refine_hist.d_res_low 34.38 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1713 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1713 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0126 ? 1918 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.2769 ? 2948 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0783 ? 334 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0069 ? 84 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 35.2806 ? 823 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 6.63 _refine_ls_shell.d_res_low 34.38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.number_reflns_R_work 1310 _refine_ls_shell.percent_reflns_obs 96.49 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1729 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.2297 # _struct.entry_id 9DGM _struct.title 'T-junction triangle 8-11' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9DGM _struct_keywords.text 'Structure of DNA tensegrity triangle with T junctions, Design T-8-11, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9DGM 9DGM ? 1 ? 1 2 PDB 9DGM 9DGM ? 2 ? 1 3 PDB 9DGM 9DGM ? 3 ? 1 4 PDB 9DGM 9DGM ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9DGM A 1 ? 16 ? 9DGM 1 ? 16 ? 1 16 2 2 9DGM B 1 ? 6 ? 9DGM 9 ? 14 ? 9 14 3 3 9DGM C 1 ? 58 ? 9DGM 1 ? 58 ? 1 58 4 4 9DGM E 1 ? 8 ? 9DGM 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 5 N1 ? ? A DC 4 B DG 13 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog5 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 8 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 8 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 8 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DG 1 O6 ? ? A DT 9 B DG 9 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A DT 9 O2 ? ? ? 1_555 B DG 1 N1 ? ? A DT 9 B DG 9 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? C DC 14 N3 ? ? ? 1_555 C DG 52 N1 ? ? C DC 14 C DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 14 N4 ? ? ? 1_555 C DG 52 O6 ? ? C DC 14 C DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 14 O2 ? ? ? 1_555 C DG 52 N2 ? ? C DC 14 C DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 15 N3 ? ? ? 1_555 C DG 51 N1 ? ? C DC 15 C DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 15 N4 ? ? ? 1_555 C DG 51 O6 ? ? C DC 15 C DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 15 O2 ? ? ? 1_555 C DG 51 N2 ? ? C DC 15 C DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 16 N1 ? ? ? 1_555 C DC 50 N3 ? ? C DG 16 C DC 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 16 N2 ? ? ? 1_555 C DC 50 O2 ? ? C DG 16 C DC 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 16 O6 ? ? ? 1_555 C DC 50 N4 ? ? C DG 16 C DC 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 17 N1 ? ? ? 1_555 C DC 49 N3 ? ? C DG 17 C DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 17 N2 ? ? ? 1_555 C DC 49 O2 ? ? C DG 17 C DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 17 O6 ? ? ? 1_555 C DC 49 N4 ? ? C DG 17 C DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 18 N3 ? ? ? 1_555 C DG 43 N2 ? ? C DC 18 C DG 43 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog31 hydrog ? ? C DC 18 O2 ? ? ? 1_555 C DG 43 N1 ? ? C DC 18 C DG 43 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog32 hydrog ? ? C DC 19 N3 ? ? ? 1_555 C DG 42 N1 ? ? C DC 19 C DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 19 N4 ? ? ? 1_555 C DG 42 O6 ? ? C DC 19 C DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 19 O2 ? ? ? 1_555 C DG 42 N2 ? ? C DC 19 C DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 20 N1 ? ? ? 1_555 C DC 41 N3 ? ? C DG 20 C DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 20 N2 ? ? ? 1_555 C DC 41 O2 ? ? C DG 20 C DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 20 O6 ? ? ? 1_555 C DC 41 N4 ? ? C DG 20 C DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 21 O2 ? ? ? 1_555 C DG 40 N1 ? ? C DC 21 C DG 40 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog39 hydrog ? ? C DG 22 N1 ? ? ? 1_555 C DC 39 N3 ? ? C DG 22 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 22 N2 ? ? ? 1_555 C DC 39 O2 ? ? C DG 22 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DG 22 O6 ? ? ? 1_555 C DC 39 N4 ? ? C DG 22 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DG 23 N1 ? ? ? 1_555 C DC 38 N3 ? ? C DG 23 C DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DG 23 N2 ? ? ? 1_555 C DC 38 O2 ? ? C DG 23 C DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DG 23 O6 ? ? ? 1_555 C DC 38 N4 ? ? C DG 23 C DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 24 N1 ? ? ? 1_555 C DT 37 N3 ? ? C DA 24 C DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DA 24 N6 ? ? ? 1_555 C DT 37 O4 ? ? C DA 24 C DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DC 25 N3 ? ? ? 1_555 C DG 36 N1 ? ? C DC 25 C DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 25 N4 ? ? ? 1_555 C DG 36 O6 ? ? C DC 25 C DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DC 25 O2 ? ? ? 1_555 C DG 36 N2 ? ? C DC 25 C DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DA 26 N1 ? ? ? 1_555 C DT 35 N3 ? ? C DA 26 C DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DA 26 N6 ? ? ? 1_555 C DT 35 O4 ? ? C DA 26 C DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DC 28 N3 ? ? ? 1_555 C DG 33 N1 ? ? C DC 28 C DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 28 N4 ? ? ? 1_555 C DG 33 O6 ? ? C DC 28 C DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 28 O2 ? ? ? 1_555 C DG 33 N2 ? ? C DC 28 C DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DA 53 N1 ? ? ? 1_555 D DG 7 N1 ? ? C DA 53 E DG 7 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog56 hydrog ? ? C DA 53 N6 ? ? ? 1_555 D DG 7 O6 ? ? C DA 53 E DG 7 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog57 hydrog ? ? C DA 53 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 53 E DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DA 53 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 53 E DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DC 54 N3 ? ? ? 1_555 D DT 6 N3 ? ? C DC 54 E DT 6 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog60 hydrog ? ? C DC 54 O2 ? ? ? 1_555 D DG 7 N1 ? ? C DC 54 E DG 7 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog61 hydrog ? ? C DA 55 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 55 E DT 6 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog62 hydrog ? ? C DG 56 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 56 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DG 56 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 56 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DG 56 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 56 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C DC 57 N3 ? ? ? 1_555 D DG 4 N2 ? ? C DC 57 E DG 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog66 hydrog ? ? C DC 57 O2 ? ? ? 1_555 D DG 4 N1 ? ? C DC 57 E DG 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog67 hydrog ? ? C DG 58 N1 ? ? ? 1_555 D DC 3 O2 ? ? C DG 58 E DC 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog68 hydrog ? ? C DG 58 N2 ? ? ? 1_555 D DC 3 N3 ? ? C DG 58 E DC 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9DGM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N1 C DG 58 ? ? N3 E DC 3 ? ? 1.92 2 1 O6 C DG 58 ? ? N4 E DC 3 ? ? 1.95 3 1 O2 C DC 57 ? ? N2 E DG 4 ? ? 1.96 4 1 N2 C DG 58 ? ? O2 E DC 3 ? ? 2.03 5 1 N4 C DC 18 ? ? O6 C DG 43 ? ? 2.06 6 1 O2 A DT 9 ? ? N2 B DG 9 ? ? 2.13 7 1 N4 C DC 54 ? ? O4 E DT 6 ? ? 2.14 8 1 O2 C DC 54 ? ? N2 E DG 7 ? ? 2.17 9 1 O2 A DC 7 ? ? N1 B DG 10 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O2 C DC 1 ? ? 1_555 N2 C DG 48 ? ? 3_555 1.89 2 1 N2 A DG 3 ? ? 1_555 "O5'" E DT 1 ? ? 4_455 2.05 3 1 "O4'" B DG 9 ? ? 1_555 OP1 E DT 8 ? ? 2_555 2.08 4 1 O2 A DC 1 ? ? 1_555 N2 E DG 2 ? ? 4_455 2.11 5 1 N3 A DT 13 ? ? 1_555 N1 C DA 9 ? ? 2_555 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 15 ? ? "C4'" A DC 15 ? ? 1.563 1.512 0.051 0.007 N 2 1 "O3'" C DG 3 ? ? "C3'" C DG 3 ? ? 1.380 1.419 -0.039 0.006 N 3 1 "O3'" C DG 7 ? ? "C3'" C DG 7 ? ? 1.519 1.435 0.084 0.013 N 4 1 "O3'" E DT 6 ? ? "C3'" E DT 6 ? ? 1.370 1.419 -0.049 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? "C1'" A DA 2 ? ? 97.47 102.40 -4.93 0.80 N 2 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.00 108.30 2.70 0.30 N 3 1 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 110.43 108.30 2.13 0.30 N 4 1 "C3'" A DT 13 ? ? "C2'" A DT 13 ? ? "C1'" A DT 13 ? ? 97.18 102.40 -5.22 0.80 N 5 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.93 108.30 2.63 0.30 N 6 1 "C3'" C DG 3 ? ? "C2'" C DG 3 ? ? "C1'" C DG 3 ? ? 96.87 102.40 -5.53 0.80 N 7 1 "O4'" C DT 8 ? ? "C1'" C DT 8 ? ? N1 C DT 8 ? ? 110.78 108.30 2.48 0.30 N 8 1 "O4'" C DA 9 ? ? "C1'" C DA 9 ? ? N9 C DA 9 ? ? 110.30 108.30 2.00 0.30 N 9 1 "C3'" C DA 13 ? ? "O3'" C DA 13 ? ? P C DC 14 ? ? 131.48 119.70 11.78 1.20 Y 10 1 "O3'" C DA 13 ? ? P C DC 14 ? ? OP1 C DC 14 ? ? 118.04 110.50 7.54 1.10 Y 11 1 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.12 108.30 1.82 0.30 N 12 1 "O4'" C DT 34 ? ? "C1'" C DT 34 ? ? N1 C DT 34 ? ? 110.28 108.30 1.98 0.30 N 13 1 "O4'" C DA 47 ? ? "C1'" C DA 47 ? ? N9 C DA 47 ? ? 111.32 108.30 3.02 0.30 N 14 1 "O4'" C DC 54 ? ? "C1'" C DC 54 ? ? N1 C DC 54 ? ? 110.80 108.30 2.50 0.30 N 15 1 "C3'" C DG 56 ? ? "C2'" C DG 56 ? ? "C1'" C DG 56 ? ? 96.01 102.40 -6.39 0.80 N 16 1 "O4'" C DG 56 ? ? "C1'" C DG 56 ? ? N9 C DG 56 ? ? 111.12 108.30 2.82 0.30 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C DT 29 ? C DT 29 2 1 Y 1 C DT 30 ? C DT 30 3 1 Y 1 C DT 31 ? C DT 31 4 1 Y 1 C DT 32 ? C DT 32 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # _ndb_struct_conf_na.entry_id 9DGM _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 B DC 6 1_555 -1.251 -0.197 -1.035 2.394 -2.422 -8.834 1 A_DG3:DC14_B A 3 ? B 14 ? 19 1 1 A DC 4 1_555 B DG 5 1_555 3.012 -0.419 -1.134 18.273 -1.965 12.200 2 A_DC4:DG13_B A 4 ? B 13 ? ? 1 1 A DA 5 1_555 B DT 4 1_555 -0.107 -0.417 -0.138 -1.388 -7.347 -10.001 3 A_DA5:DT12_B A 5 ? B 12 ? 20 1 1 A DG 6 1_555 B DC 3 1_555 -0.376 -0.650 0.782 7.524 -9.660 -0.947 4 A_DG6:DC11_B A 6 ? B 11 ? 19 1 1 A DC 7 1_555 B DG 2 1_555 2.332 -0.889 0.154 8.620 -8.688 10.148 5 A_DC7:DG10_B A 7 ? B 10 ? 19 1 1 A DC 8 1_555 B DG 1 1_555 0.423 -1.298 -1.408 -19.486 23.100 -13.803 6 A_DC8:DG9_B A 8 ? B 9 ? 19 1 1 C DC 49 1_555 C DG 17 1_555 -0.450 0.056 0.397 -3.621 -30.628 6.061 7 C_DC49:DG17_C C 49 ? C 17 ? 19 1 1 C DC 50 1_555 C DG 16 1_555 1.084 -0.207 0.178 20.262 -12.449 -10.366 8 C_DC50:DG16_C C 50 ? C 16 ? 19 1 1 C DG 51 1_555 C DC 15 1_555 -0.166 0.335 -1.231 -54.721 -28.269 0.730 9 C_DG51:DC15_C C 51 ? C 15 ? 19 1 1 C DG 52 1_555 C DC 14 1_555 -0.481 -0.432 -0.184 -16.137 -12.976 -8.711 10 C_DG52:DC14_C C 52 ? C 14 ? 19 1 1 C DA 53 1_555 D DT 8 1_555 1.253 -0.199 0.621 15.448 -14.684 -0.241 11 C_DA53:DT8_E C 53 ? E 8 ? 20 1 1 C DC 54 1_555 D DG 7 1_555 1.321 -0.922 1.080 9.520 -13.656 8.284 12 C_DC54:DG7_E C 54 ? E 7 ? ? 1 1 C DA 55 1_555 D DT 6 1_555 2.497 -0.389 1.942 15.667 -34.730 16.591 13 C_DA55:DT6_E C 55 ? E 6 ? ? 1 1 C DG 56 1_555 D DC 5 1_555 0.361 -0.680 -0.181 2.511 -16.979 1.589 14 C_DG56:DC5_E C 56 ? E 5 ? 19 1 1 C DC 57 1_555 D DG 4 1_555 -0.583 -0.196 1.382 -22.133 -21.177 14.950 15 C_DC57:DG4_E C 57 ? E 4 ? 22 1 1 C DG 58 1_555 D DC 3 1_555 -0.512 -1.254 -0.599 -21.189 -21.577 1.203 16 C_DG58:DC3_E C 58 ? E 3 ? 22 1 1 C DC 18 1_555 C DG 43 1_555 -0.359 -0.836 1.935 -50.057 15.701 -5.278 17 C_DC18:DG43_C C 18 ? C 43 ? 22 1 1 C DC 19 1_555 C DG 42 1_555 1.134 -0.429 0.717 -17.828 -30.431 -2.492 18 C_DC19:DG42_C C 19 ? C 42 ? 19 1 1 C DG 20 1_555 C DC 41 1_555 0.430 -0.682 1.153 3.822 -7.468 -2.226 19 C_DG20:DC41_C C 20 ? C 41 ? 19 1 1 C DC 21 1_555 C DG 40 1_555 3.699 -0.479 0.640 6.337 -8.094 18.594 20 C_DC21:DG40_C C 21 ? C 40 ? ? ? 1 C DG 22 1_555 C DC 39 1_555 -0.062 -0.225 0.793 15.182 -12.489 5.057 21 C_DG22:DC39_C C 22 ? C 39 ? 19 1 1 C DG 23 1_555 C DC 38 1_555 -0.811 -0.573 0.770 11.981 -0.528 -9.970 22 C_DG23:DC38_C C 23 ? C 38 ? 19 1 1 C DA 24 1_555 C DT 37 1_555 -0.497 -0.501 0.260 15.399 8.463 -4.275 23 C_DA24:DT37_C C 24 ? C 37 ? 20 1 1 C DC 25 1_555 C DG 36 1_555 -1.149 -0.394 0.916 12.119 -11.037 1.786 24 C_DC25:DG36_C C 25 ? C 36 ? 19 1 1 C DA 26 1_555 C DT 35 1_555 -0.453 0.380 0.962 20.125 -17.810 -2.468 25 C_DA26:DT35_C C 26 ? C 35 ? 20 1 1 C DC 28 1_555 C DG 33 1_555 0.912 0.313 0.312 -6.793 -16.866 6.172 26 C_DC28:DG33_C C 28 ? C 33 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 B DC 6 1_555 A DC 4 1_555 B DG 5 1_555 1.384 -0.222 2.593 -0.583 2.618 48.956 -0.423 -1.703 2.563 3.157 0.703 49.025 1 AA_DG3DC4:DG13DC14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DC 4 1_555 B DG 5 1_555 A DA 5 1_555 B DT 4 1_555 -2.202 -0.527 3.375 -8.368 9.771 26.589 -3.342 2.351 3.491 19.837 16.988 29.487 2 AA_DC4DA5:DT12DG13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DA 5 1_555 B DT 4 1_555 A DG 6 1_555 B DC 3 1_555 1.389 -0.958 3.557 -1.800 -23.666 39.191 1.200 -1.978 3.505 -31.978 2.432 45.575 3 AA_DA5DG6:DC11DT12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DG 6 1_555 B DC 3 1_555 A DC 7 1_555 B DG 2 1_555 0.329 0.047 3.396 5.068 -13.447 47.442 1.099 -0.001 3.286 -16.282 -6.137 49.450 4 AA_DG6DC7:DG10DC11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DC 7 1_555 B DG 2 1_555 A DC 8 1_555 B DG 1 1_555 -1.228 -0.705 4.161 8.108 -11.815 46.361 0.306 2.297 3.963 -14.603 -10.021 48.408 5 AA_DC7DC8:DG9DG10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 C DC 49 1_555 C DG 17 1_555 C DC 50 1_555 C DG 16 1_555 -0.943 -0.725 2.750 -1.334 1.908 41.661 -1.186 1.206 2.743 2.680 1.874 41.723 6 CC_DC49DC50:DG16DG17_CC C 49 ? C 17 ? C 50 ? C 16 ? 1 C DC 50 1_555 C DG 16 1_555 C DG 51 1_555 C DC 15 1_555 -0.050 -0.825 5.163 10.610 1.199 39.276 -1.397 1.929 4.961 1.745 -15.441 40.646 7 CC_DC50DG51:DC15DG16_CC C 50 ? C 16 ? C 51 ? C 15 ? 1 C DG 51 1_555 C DC 15 1_555 C DG 52 1_555 C DC 14 1_555 0.610 0.179 2.198 -4.651 -3.606 29.144 0.845 -1.828 2.042 -7.075 9.126 29.719 8 CC_DG51DG52:DC14DC15_CC C 51 ? C 15 ? C 52 ? C 14 ? 1 C DG 52 1_555 C DC 14 1_555 C DA 53 1_555 D DT 8 1_555 -2.450 -1.943 2.124 -7.630 1.431 21.639 -5.262 4.110 2.687 3.663 19.531 22.973 9 CC_DG52DA53:DT8DC14_EC C 52 ? C 14 ? C 53 ? E 8 ? 1 C DA 53 1_555 D DT 8 1_555 C DC 54 1_555 D DG 7 1_555 0.818 -1.016 3.107 -1.163 6.528 33.651 -2.664 -1.555 2.836 11.141 1.985 34.279 10 CC_DA53DC54:DG7DT8_EE C 53 ? E 8 ? C 54 ? E 7 ? 1 C DC 54 1_555 D DG 7 1_555 C DA 55 1_555 D DT 6 1_555 0.432 1.650 3.388 11.482 -2.783 39.292 2.674 0.688 3.264 -4.029 -16.625 40.962 11 CC_DC54DA55:DT6DG7_EE C 54 ? E 7 ? C 55 ? E 6 ? 1 C DA 55 1_555 D DT 6 1_555 C DG 56 1_555 D DC 5 1_555 -0.523 0.108 3.879 -1.976 -6.562 35.715 1.260 0.511 3.823 -10.579 3.185 36.345 12 CC_DA55DG56:DC5DT6_EE C 55 ? E 6 ? C 56 ? E 5 ? 1 C DG 56 1_555 D DC 5 1_555 C DC 57 1_555 D DG 4 1_555 0.202 0.243 3.604 -11.001 -9.667 45.414 1.148 -1.215 3.357 -12.154 13.831 47.597 13 CC_DG56DC57:DG4DC5_EE C 56 ? E 5 ? C 57 ? E 4 ? 1 C DC 57 1_555 D DG 4 1_555 C DG 58 1_555 D DC 3 1_555 -1.427 -1.252 3.264 -4.937 24.038 33.300 -4.173 1.539 2.116 36.440 7.484 41.158 14 CC_DC57DG58:DC3DG4_EE C 57 ? E 4 ? C 58 ? E 3 ? 1 C DC 18 1_555 C DG 43 1_555 C DC 19 1_555 C DG 42 1_555 -0.113 -0.130 3.014 21.762 -7.839 47.244 0.334 1.462 2.714 -9.168 -25.453 52.310 15 CC_DC18DC19:DG42DG43_CC C 18 ? C 43 ? C 19 ? C 42 ? 1 C DC 19 1_555 C DG 42 1_555 C DG 20 1_555 C DC 41 1_555 -0.107 -0.187 2.597 -7.104 -1.607 24.716 -0.058 -1.354 2.535 -3.653 16.153 25.750 16 CC_DC19DG20:DC41DG42_CC C 19 ? C 42 ? C 20 ? C 41 ? 1 C DG 20 1_555 C DC 41 1_555 C DC 21 1_555 C DG 40 1_555 1.438 0.945 3.782 13.351 -6.586 56.577 1.382 -0.639 3.881 -6.818 -13.822 58.346 17 CC_DG20DC21:DG40DC41_CC C 20 ? C 41 ? C 21 ? C 40 ? 1 C DC 21 1_555 C DG 40 1_555 C DG 22 1_555 C DC 39 1_555 -0.766 -0.205 2.504 -2.332 9.664 18.964 -3.566 1.336 2.214 27.055 6.530 21.391 18 CC_DC21DG22:DC39DG40_CC C 21 ? C 40 ? C 22 ? C 39 ? 1 C DG 22 1_555 C DC 39 1_555 C DG 23 1_555 C DC 38 1_555 -0.795 -0.873 3.265 -6.707 -2.717 35.493 -1.011 0.307 3.409 -4.400 10.863 36.200 19 CC_DG22DG23:DC38DC39_CC C 22 ? C 39 ? C 23 ? C 38 ? 1 C DG 23 1_555 C DC 38 1_555 C DA 24 1_555 C DT 37 1_555 0.194 -0.923 3.497 0.358 -7.544 35.940 -0.332 -0.254 3.613 -12.063 -0.572 36.699 20 CC_DG23DA24:DT37DC38_CC C 23 ? C 38 ? C 24 ? C 37 ? 1 C DA 24 1_555 C DT 37 1_555 C DC 25 1_555 C DG 36 1_555 0.523 -0.450 3.436 0.057 -7.427 41.984 0.176 -0.714 3.464 -10.269 -0.079 42.607 21 CC_DA24DC25:DG36DT37_CC C 24 ? C 37 ? C 25 ? C 36 ? 1 C DC 25 1_555 C DG 36 1_555 C DA 26 1_555 C DT 35 1_555 0.066 -0.573 3.033 1.854 -11.983 40.205 0.392 0.092 3.074 -16.971 -2.625 41.922 22 CC_DC25DA26:DT35DG36_CC C 25 ? C 36 ? C 26 ? C 35 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'CCF 2107393' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'B DNA duplex with 31 base pairs' # _space_group.name_H-M_alt 'R 3 :H' _space_group.name_Hall 'R 3' _space_group.IT_number 146 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 9DGM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.005971 _atom_sites.fract_transf_matrix[1][2] 0.003447 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006894 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012804 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #