HEADER SIGNALING PROTEIN 23-SEP-24 9DPN TITLE BMP-9 WILD-TYPE DIMER WITHOUT RADIATION DAMAGE IN NEUTRAL PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-2,BONE MORPHOGENETIC PROTEIN 9,BMP-9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF2, BMP9; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 (INVITROGEN); SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: EMBRYONIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS SIGNALING PROTEIN, BMP, BONE MORPHOGENETIC PROTEIN, TGF-BETA FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.A.SCHWARTZE,A.P.HINCK REVDAT 1 05-MAR-25 9DPN 0 JRNL AUTH T.A.SCHWARTZE,S.A.MOROSKY,T.L.ROSATO,A.HENRICKSON,G.LIN, JRNL AUTH 2 C.S.HINCK,A.B.TAYLOR,S.K.OLSEN,G.CALERO,B.DEMELER,B.L.ROMAN, JRNL AUTH 3 A.P.HINCK JRNL TITL MOLECULAR BASIS OF INTERCHAIN DISULFIDE BOND FORMATION IN JRNL TITL 2 BMP-9 AND BMP-10. JRNL REF J.MOL.BIOL. V. 437 68935 2025 JRNL REFN ESSN 1089-8638 JRNL PMID 39793884 JRNL DOI 10.1016/J.JMB.2025.168935 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 8920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.250 REMARK 3 FREE R VALUE TEST SET COUNT : 379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5000 - 3.2300 0.93 2920 131 0.1769 0.1686 REMARK 3 2 3.2300 - 2.5600 0.95 2825 124 0.2112 0.2400 REMARK 3 3 2.5600 - 2.2400 0.95 2796 124 0.2440 0.3284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.257 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.711 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 850 REMARK 3 ANGLE : 0.678 1152 REMARK 3 CHIRALITY : 0.045 126 REMARK 3 PLANARITY : 0.007 144 REMARK 3 DIHEDRAL : 13.896 310 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3191 4.7679 6.1311 REMARK 3 T TENSOR REMARK 3 T11: 0.4591 T22: 0.3803 REMARK 3 T33: 0.3976 T12: 0.1053 REMARK 3 T13: -0.0481 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 5.2307 L22: 4.6465 REMARK 3 L33: 6.6322 L12: -0.6933 REMARK 3 L13: 0.3706 L23: 2.7820 REMARK 3 S TENSOR REMARK 3 S11: 0.2897 S12: 0.5341 S13: -0.2779 REMARK 3 S21: 0.0026 S22: -0.3794 S23: 0.2713 REMARK 3 S31: 0.7320 S32: -0.3967 S33: 0.0387 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4621 12.1888 30.2773 REMARK 3 T TENSOR REMARK 3 T11: 0.5913 T22: 0.2895 REMARK 3 T33: 0.3814 T12: -0.0155 REMARK 3 T13: 0.1672 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 4.2816 L22: 6.9004 REMARK 3 L33: 8.0373 L12: 5.4351 REMARK 3 L13: -2.0209 L23: -2.5885 REMARK 3 S TENSOR REMARK 3 S11: -0.3983 S12: 0.1504 S13: -1.1688 REMARK 3 S21: 0.5950 S22: -0.3018 S23: -0.5413 REMARK 3 S31: 0.8335 S32: 0.4552 S33: -0.0512 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7170 23.7512 29.0088 REMARK 3 T TENSOR REMARK 3 T11: 0.3762 T22: 0.3425 REMARK 3 T33: 0.2758 T12: -0.0421 REMARK 3 T13: -0.0191 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.2328 L22: 6.2441 REMARK 3 L33: 9.0285 L12: -2.5190 REMARK 3 L13: -3.9131 L23: 3.5285 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: 0.5678 S13: -0.2089 REMARK 3 S21: -0.1660 S22: -0.3851 S23: 0.3871 REMARK 3 S31: -0.5581 S32: -0.6264 S33: 0.2122 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0920 8.3329 4.9999 REMARK 3 T TENSOR REMARK 3 T11: 0.4496 T22: 0.4916 REMARK 3 T33: 0.3778 T12: 0.1207 REMARK 3 T13: -0.0004 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 3.0431 L22: 3.4333 REMARK 3 L33: 3.8535 L12: -0.3613 REMARK 3 L13: -1.0804 L23: 2.5662 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: 0.4051 S13: 0.0904 REMARK 3 S21: -0.1957 S22: -0.0402 S23: -0.3110 REMARK 3 S31: 0.0881 S32: 0.5206 S33: -0.1066 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 41.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.84100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NACL, 17% GLYCEROL, 0.1 M HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 35.60150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.27050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.63525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.60150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.90575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 109.90575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.60150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.63525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 35.60150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.27050 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.60150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 73.27050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.60150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 109.90575 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.63525 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.60150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.63525 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 109.90575 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.60150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.60150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.27050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 35.60150 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.63525 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 662 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 465 GLY A 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 354 172.44 54.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 665 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 507 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 416 OH REMARK 620 2 HOH A 643 O 107.5 REMARK 620 N 1 DBREF 9DPN A 320 429 UNP Q9UK05 GDF2_HUMAN 320 429 SEQADV 9DPN SER A 321 UNP Q9UK05 ALA 321 ENGINEERED MUTATION SEQRES 1 A 110 SER SER GLY ALA GLY SER HIS CYS GLN LYS THR SER LEU SEQRES 2 A 110 ARG VAL ASN PHE GLU ASP ILE GLY TRP ASP SER TRP ILE SEQRES 3 A 110 ILE ALA PRO LYS GLU TYR GLU ALA TYR GLU CYS LYS GLY SEQRES 4 A 110 GLY CYS PHE PHE PRO LEU ALA ASP ASP VAL THR PRO THR SEQRES 5 A 110 LYS HIS ALA ILE VAL GLN THR LEU VAL HIS LEU LYS PHE SEQRES 6 A 110 PRO THR LYS VAL GLY LYS ALA CYS CYS VAL PRO THR LYS SEQRES 7 A 110 LEU SER PRO ILE SER VAL LEU TYR LYS ASP ASP MET GLY SEQRES 8 A 110 VAL PRO THR LEU LYS TYR HIS TYR GLU GLY MET SER VAL SEQRES 9 A 110 ALA GLU CYS GLY CYS ARG HET GOL A 501 14 HET CL A 502 1 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET NA A 507 1 HET NA A 508 1 HET NA A 509 1 HET NA A 510 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 CL 5(CL 1-) FORMUL 8 NA 4(NA 1+) FORMUL 12 HOH *65(H2 O) HELIX 1 AA1 THR A 371 PHE A 384 1 14 SHEET 1 AA1 2 GLN A 328 THR A 330 0 SHEET 2 AA1 2 GLU A 355 LYS A 357 -1 O GLU A 355 N THR A 330 SHEET 1 AA2 2 ARG A 333 ASN A 335 0 SHEET 2 AA2 2 GLU A 350 GLU A 352 -1 O TYR A 351 N VAL A 334 SHEET 1 AA3 2 CYS A 393 LYS A 406 0 SHEET 2 AA3 2 PRO A 412 CYS A 428 -1 O TYR A 418 N ILE A 401 SSBOND 1 CYS A 327 CYS A 393 1555 1555 2.02 SSBOND 2 CYS A 356 CYS A 426 1555 1555 2.04 SSBOND 3 CYS A 360 CYS A 428 1555 1555 1.99 SSBOND 4 CYS A 392 CYS A 392 1555 6555 2.07 LINK OG1 THR A 386 NA NA A 508 1555 1555 2.57 LINK OH TYR A 416 NA NA A 507 1555 1555 2.95 LINK NA NA A 507 O HOH A 643 1555 10655 3.07 CISPEP 1 ALA A 347 PRO A 348 0 -0.28 CISPEP 2 PHE A 362 PRO A 363 0 -1.79 CRYST1 71.203 71.203 146.541 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006824 0.00000 CONECT 33 1068 CONECT 505 1579 CONECT 551 1596 CONECT 968 1647 CONECT 1068 33 CONECT 1435 1646 CONECT 1579 505 CONECT 1596 551 CONECT 1627 1628 1629 1633 1634 CONECT 1628 1627 1635 CONECT 1629 1627 1630 1631 1636 CONECT 1630 1629 1637 CONECT 1631 1629 1632 1638 1639 CONECT 1632 1631 1640 CONECT 1633 1627 CONECT 1634 1627 CONECT 1635 1628 CONECT 1636 1629 CONECT 1637 1630 CONECT 1638 1631 CONECT 1639 1631 CONECT 1640 1632 CONECT 1646 1435 CONECT 1647 968 MASTER 366 0 10 1 6 0 0 6 902 1 24 9 END