HEADER SIGNALING PROTEIN 23-SEP-24 9DPV TITLE BMP-9 K357R G389S DIMER WITHOUT RADIATION DAMAGE IN NEUTRAL PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-2,BONE MORPHOGENETIC PROTEIN 9,BMP-9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF2, BMP9; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 (INVITROGEN); SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: EMBRYONIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS SIGNALING PROTEIN, BMP, BONE MORPHOGENETIC PROTEIN, TGF-BETA FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.A.SCHWARTZE,A.P.HINCK REVDAT 1 05-MAR-25 9DPV 0 JRNL AUTH T.A.SCHWARTZE,S.A.MOROSKY,T.L.ROSATO,A.HENRICKSON,G.LIN, JRNL AUTH 2 C.S.HINCK,A.B.TAYLOR,S.K.OLSEN,G.CALERO,B.DEMELER,B.L.ROMAN, JRNL AUTH 3 A.P.HINCK JRNL TITL MOLECULAR BASIS OF INTERCHAIN DISULFIDE BOND FORMATION IN JRNL TITL 2 BMP-9 AND BMP-10. JRNL REF J.MOL.BIOL. V. 437 68935 2025 JRNL REFN ESSN 1089-8638 JRNL PMID 39793884 JRNL DOI 10.1016/J.JMB.2025.168935 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 12997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5500 - 3.4100 0.99 2613 143 0.2240 0.2707 REMARK 3 2 3.4000 - 2.7000 1.00 2507 125 0.1957 0.2490 REMARK 3 3 2.7000 - 2.3600 0.99 2474 123 0.2328 0.2442 REMARK 3 4 2.3600 - 2.1400 0.99 2441 136 0.2311 0.2589 REMARK 3 5 2.1400 - 1.9900 0.94 2313 122 0.3031 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.248 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 854 REMARK 3 ANGLE : 1.248 1158 REMARK 3 CHIRALITY : 0.065 127 REMARK 3 PLANARITY : 0.014 145 REMARK 3 DIHEDRAL : 12.095 312 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2911 4.0562 15.3897 REMARK 3 T TENSOR REMARK 3 T11: 0.5594 T22: 0.4251 REMARK 3 T33: 0.3395 T12: -0.0005 REMARK 3 T13: -0.0334 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.4641 L22: 6.8355 REMARK 3 L33: 3.4615 L12: 0.5554 REMARK 3 L13: 2.3582 L23: 4.1368 REMARK 3 S TENSOR REMARK 3 S11: 0.5429 S12: 0.0974 S13: -0.6895 REMARK 3 S21: 0.6821 S22: -0.6295 S23: 0.3129 REMARK 3 S31: 1.0824 S32: -1.1222 S33: 0.2969 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2067 5.2608 1.6958 REMARK 3 T TENSOR REMARK 3 T11: 0.6513 T22: 0.7265 REMARK 3 T33: 0.2503 T12: 0.3093 REMARK 3 T13: -0.1376 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.8125 L22: 3.6934 REMARK 3 L33: 2.6375 L12: -0.3620 REMARK 3 L13: 0.7407 L23: 1.6184 REMARK 3 S TENSOR REMARK 3 S11: 0.6511 S12: 0.9099 S13: -0.3368 REMARK 3 S21: -0.6596 S22: -0.6936 S23: 0.4774 REMARK 3 S31: 0.2042 S32: -0.5442 S33: -0.0766 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5274 12.2029 29.8417 REMARK 3 T TENSOR REMARK 3 T11: 0.7679 T22: 0.3652 REMARK 3 T33: 0.4120 T12: -0.0805 REMARK 3 T13: 0.1351 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 7.1907 L22: 5.0380 REMARK 3 L33: 7.1030 L12: 4.8236 REMARK 3 L13: -3.7047 L23: 0.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.6176 S12: 0.2770 S13: -1.3673 REMARK 3 S21: 0.8440 S22: -0.1614 S23: -0.4554 REMARK 3 S31: 1.6317 S32: -0.0482 S33: 0.5874 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7878 23.7257 28.6516 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.4169 REMARK 3 T33: 0.2254 T12: -0.0903 REMARK 3 T13: 0.0318 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 2.2360 L22: 4.3202 REMARK 3 L33: 4.9709 L12: 0.1389 REMARK 3 L13: -2.0932 L23: -0.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.2228 S12: 0.2907 S13: -0.1743 REMARK 3 S21: 0.1824 S22: -0.2508 S23: 0.3738 REMARK 3 S31: -0.0250 S32: -0.3638 S33: 0.0851 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0909 8.4856 1.1557 REMARK 3 T TENSOR REMARK 3 T11: 0.4207 T22: 0.6325 REMARK 3 T33: 0.2669 T12: 0.2273 REMARK 3 T13: 0.0471 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 3.6427 L22: 4.1445 REMARK 3 L33: 1.9623 L12: -0.5775 REMARK 3 L13: 0.0418 L23: 2.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.3293 S12: 0.9517 S13: 0.1480 REMARK 3 S21: -0.4203 S22: -0.0234 S23: -0.4805 REMARK 3 S31: 0.4009 S32: 0.5698 S33: -0.2975 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3579 8.2434 8.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.3821 T22: 0.4128 REMARK 3 T33: 0.2747 T12: 0.1447 REMARK 3 T13: -0.0207 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 4.2748 L22: 4.4339 REMARK 3 L33: 6.1792 L12: -1.5557 REMARK 3 L13: -3.1970 L23: 3.3221 REMARK 3 S TENSOR REMARK 3 S11: 0.3862 S12: 0.4293 S13: -0.0133 REMARK 3 S21: -0.1075 S22: -0.2775 S23: -0.5879 REMARK 3 S31: 0.1254 S32: 0.2170 S33: -0.0644 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000287389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13055 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 41.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 1.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NACL, 22-26% GLYCEROL, 0.1 M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 35.55250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.77650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.38825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.55250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.16475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 109.16475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.55250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.38825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 35.55250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.77650 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.55250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.77650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.55250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 109.16475 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.38825 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.55250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.38825 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 109.16475 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.55250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.55250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.77650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 35.55250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.38825 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 656 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 465 GLY A 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 354 170.51 59.88 REMARK 500 THR A 369 55.23 38.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 507 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 416 OH REMARK 620 2 HOH A 646 O 109.4 REMARK 620 N 1 DBREF 9DPV A 320 429 UNP Q9UK05 GDF2_HUMAN 320 429 SEQADV 9DPV SER A 321 UNP Q9UK05 ALA 321 ENGINEERED MUTATION SEQADV 9DPV ARG A 357 UNP Q9UK05 LYS 357 ENGINEERED MUTATION SEQADV 9DPV SER A 389 UNP Q9UK05 GLY 389 ENGINEERED MUTATION SEQRES 1 A 110 SER SER GLY ALA GLY SER HIS CYS GLN LYS THR SER LEU SEQRES 2 A 110 ARG VAL ASN PHE GLU ASP ILE GLY TRP ASP SER TRP ILE SEQRES 3 A 110 ILE ALA PRO LYS GLU TYR GLU ALA TYR GLU CYS ARG GLY SEQRES 4 A 110 GLY CYS PHE PHE PRO LEU ALA ASP ASP VAL THR PRO THR SEQRES 5 A 110 LYS HIS ALA ILE VAL GLN THR LEU VAL HIS LEU LYS PHE SEQRES 6 A 110 PRO THR LYS VAL SER LYS ALA CYS CYS VAL PRO THR LYS SEQRES 7 A 110 LEU SER PRO ILE SER VAL LEU TYR LYS ASP ASP MET GLY SEQRES 8 A 110 VAL PRO THR LEU LYS TYR HIS TYR GLU GLY MET SER VAL SEQRES 9 A 110 ALA GLU CYS GLY CYS ARG HET GOL A 501 14 HET CL A 502 1 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET NA A 507 1 HET NA A 508 1 HET NA A 509 1 HET NA A 510 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 CL 5(CL 1-) FORMUL 8 NA 4(NA 1+) FORMUL 12 HOH *87(H2 O) HELIX 1 AA1 THR A 371 PHE A 384 1 14 SHEET 1 AA1 2 GLN A 328 THR A 330 0 SHEET 2 AA1 2 GLU A 355 ARG A 357 -1 O GLU A 355 N THR A 330 SHEET 1 AA2 2 ARG A 333 ASN A 335 0 SHEET 2 AA2 2 GLU A 350 GLU A 352 -1 O TYR A 351 N VAL A 334 SHEET 1 AA3 3 ILE A 345 ALA A 347 0 SHEET 2 AA3 3 CYS A 393 LYS A 406 -1 O LEU A 404 N ALA A 347 SHEET 3 AA3 3 PRO A 412 CYS A 428 -1 O SER A 422 N SER A 399 SSBOND 1 CYS A 327 CYS A 393 1555 1555 2.03 SSBOND 2 CYS A 356 CYS A 426 1555 1555 2.03 SSBOND 3 CYS A 360 CYS A 428 1555 1555 2.03 SSBOND 4 CYS A 392 CYS A 392 1555 6555 2.10 LINK OD2 ASP A 338 NA NA A 510 1555 1555 2.99 LINK OG1 THR A 386 NA NA A 509 1555 1555 2.63 LINK OH TYR A 416 NA NA A 507 1555 1555 2.93 LINK NA NA A 507 O HOH A 646 1555 10655 2.95 CISPEP 1 ALA A 347 PRO A 348 0 -1.19 CISPEP 2 PHE A 362 PRO A 363 0 -0.70 CRYST1 71.105 71.105 145.553 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006870 0.00000 CONECT 33 1075 CONECT 217 1656 CONECT 505 1586 CONECT 553 1603 CONECT 970 1655 CONECT 1075 33 CONECT 1442 1653 CONECT 1586 505 CONECT 1603 553 CONECT 1634 1635 1636 1640 1641 CONECT 1635 1634 1642 CONECT 1636 1634 1637 1638 1643 CONECT 1637 1636 1644 CONECT 1638 1636 1639 1645 1646 CONECT 1639 1638 1647 CONECT 1640 1634 CONECT 1641 1634 CONECT 1642 1635 CONECT 1643 1636 CONECT 1644 1637 CONECT 1645 1638 CONECT 1646 1638 CONECT 1647 1639 CONECT 1653 1442 CONECT 1655 970 CONECT 1656 217 MASTER 387 0 10 1 7 0 0 6 928 1 26 9 END