HEADER REPLICATION 25-SEP-24 9DR7 TITLE PRODUCT COMPLEX OF DNA POLYMERASE IOTA WITH 2 MONOPHOSPHATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IOTA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ETA2,RAD30 HOMOLOG B; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CATALYTIC CORE OF DNA POLYMERASE IOTA; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(P*AP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*CP*T)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: SELF-ANNEALING DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLI, RAD30B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS DNA, POLYMERASE, LESION, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR Z.FREVERT,D.REUSCH,B.FREUDENTHAL,M.T.WASHINGTON REVDAT 2 16-JUL-25 9DR7 1 JRNL REVDAT 1 09-JUL-25 9DR7 0 JRNL AUTH Z.FREVERT,D.T.REUSCH,M.S.GILDENBERG,S.M.JORDAN,B.J.RYAN, JRNL AUTH 2 B.D.FREUDENTHAL,M.T.WASHINGTON JRNL TITL VISUALIZING DNA POLYMERASE IOTA CATALYZE HOOGSTEEN-DIRECTED JRNL TITL 2 DNA SYNTHESIS. JRNL REF NAT COMMUN V. 16 5979 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40593703 JRNL DOI 10.1038/S41467-025-61245-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.ARACIL REMARK 1 TITL [TREATMENT OF VITREOUS HEMORRHAGES. RARE CAUSES]. REMARK 1 REF BULL SOC OPHTALMOL FR V.C NO 137 1987 REMARK 1 REFN ISSN 0081-1270 REMARK 1 PMID 3322595 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0900 - 4.9000 0.99 2797 163 0.2299 0.2802 REMARK 3 2 4.9000 - 3.8900 0.99 2636 140 0.2123 0.2668 REMARK 3 3 3.8900 - 3.4000 1.00 2596 136 0.2562 0.3073 REMARK 3 4 3.4000 - 3.0900 1.00 2585 139 0.2662 0.3421 REMARK 3 5 3.0900 - 2.8700 1.00 2577 133 0.3121 0.3974 REMARK 3 6 2.8700 - 2.7000 1.00 2548 134 0.3075 0.3443 REMARK 3 7 2.7000 - 2.5600 1.00 2546 139 0.2869 0.3329 REMARK 3 8 2.5600 - 2.4500 1.00 2532 125 0.3180 0.3974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.344 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3331 REMARK 3 ANGLE : 0.609 4563 REMARK 3 CHIRALITY : 0.039 531 REMARK 3 PLANARITY : 0.006 524 REMARK 3 DIHEDRAL : 15.134 559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000288649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7 1.5 -1.8 M AMMONIUM REMARK 280 SULFATE 5 MM EDTA, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.89333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.44667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.17000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.72333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 168.61667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 134.89333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.44667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.72333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.17000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 168.61667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 49.09500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 85.03503 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.72333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 ALA A 25 REMARK 465 SER A 351 REMARK 465 GLU A 352 REMARK 465 LYS A 353 REMARK 465 HIS A 354 REMARK 465 TYR A 355 REMARK 465 LYS A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 THR A 374 REMARK 465 GLY A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 LYS A 398 REMARK 465 MET A 399 REMARK 465 PRO A 400 REMARK 465 PHE A 401 REMARK 465 HIS A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 415 REMARK 465 LEU A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 465 DT B 1 REMARK 465 DC B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 229 HG SER A 232 1.55 REMARK 500 H LYS A 245 O HOH B 201 1.55 REMARK 500 OP2 DC B 16 O HOH B 201 1.76 REMARK 500 OE1 GLU A 304 O HOH A 601 1.96 REMARK 500 O HOH A 607 O HOH A 645 2.00 REMARK 500 O4 PO4 A 501 O HOH A 602 2.05 REMARK 500 OE1 GLN A 58 O HOH A 603 2.10 REMARK 500 O HOH A 641 O HOH B 214 2.14 REMARK 500 OD1 ASP A 126 O HOH A 604 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH B 208 10665 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 37 73.90 21.74 REMARK 500 ASP A 52 -29.24 73.91 REMARK 500 LYS A 60 -126.77 61.36 REMARK 500 CYS A 88 84.80 -162.57 REMARK 500 LYS A 271 35.95 -80.67 REMARK 500 GLU A 272 -24.66 -147.87 REMARK 500 ASP A 289 103.41 -168.80 REMARK 500 LYS A 310 59.20 10.07 REMARK 500 SER A 312 103.90 -54.95 REMARK 500 GLU A 316 7.39 -64.60 REMARK 500 ALA A 317 5.92 -64.22 REMARK 500 ILE A 369 -9.64 -58.66 REMARK 500 ASN A 412 72.69 57.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 LEU A 35 O 81.9 REMARK 620 3 ASP A 126 OD2 85.9 107.5 REMARK 620 4 PO4 A 501 O3 116.5 89.2 154.2 REMARK 620 5 DT B 19 OP1 116.2 161.0 70.1 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 ASP A 34 OD2 48.3 REMARK 620 3 ASP A 126 OD2 86.4 133.6 REMARK 620 4 GLU A 127 OE2 110.2 87.3 123.3 REMARK 620 5 DT B 19 OP1 125.1 123.8 70.2 124.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 237 O REMARK 620 2 ILE A 239 O 95.5 REMARK 620 3 ILE A 242 O 81.6 83.5 REMARK 620 4 DC B 17 OP1 160.4 90.1 80.5 REMARK 620 N 1 2 3 DBREF 9DR7 A 1 420 UNP Q9UNA4 POLI_HUMAN 26 445 DBREF 9DR7 B 1 19 PDB 9DR7 9DR7 1 19 SEQRES 1 A 420 MET GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN SEQRES 2 A 420 GLY VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SEQRES 3 A 420 SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR SEQRES 4 A 420 ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP SEQRES 5 A 420 LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR SEQRES 6 A 420 CYS ASN TYR GLU ALA ARG LYS LEU GLY VAL LYS LYS LEU SEQRES 7 A 420 MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU SEQRES 8 A 420 VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU SEQRES 9 A 420 MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER SEQRES 10 A 420 PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL SEQRES 11 A 420 ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU SEQRES 12 A 420 GLN SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS SEQRES 13 A 420 VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU SEQRES 14 A 420 HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU SEQRES 15 A 420 MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY SEQRES 16 A 420 CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU SEQRES 17 A 420 VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU SEQRES 18 A 420 LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN SEQRES 19 A 420 HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA SEQRES 20 A 420 LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP SEQRES 21 A 420 LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU SEQRES 22 A 420 GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE SEQRES 23 A 420 GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO SEQRES 24 A 420 GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SEQRES 25 A 420 SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU SEQRES 26 A 420 ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS SEQRES 27 A 420 PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER SEQRES 28 A 420 GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE SEQRES 29 A 420 PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR SEQRES 30 A 420 ASP VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU SEQRES 31 A 420 PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU SEQRES 32 A 420 THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU SEQRES 33 A 420 ASN THR ALA LYS SEQRES 1 B 19 DT DC DA DA DG DG DG DT DC DC DT DA DG SEQRES 2 B 19 DG DA DC DC DC DT HET PO4 A 501 5 HET MG A 502 1 HET MG A 503 1 HET MG A 504 1 HET PO4 B 101 5 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MG 3(MG 2+) FORMUL 8 HOH *83(H2 O) HELIX 1 AA1 CYS A 37 ASN A 47 1 11 HELIX 2 AA2 PRO A 48 LYS A 51 5 4 HELIX 3 AA3 ASN A 67 LYS A 72 1 6 HELIX 4 AA4 VAL A 81 CYS A 88 1 8 HELIX 5 AA5 LEU A 99 SER A 117 1 19 HELIX 6 AA6 LEU A 132 GLN A 142 1 11 HELIX 7 AA7 GLN A 144 SER A 149 1 6 HELIX 8 AA8 ASN A 159 GLN A 161 5 3 HELIX 9 AA9 ASP A 167 GLY A 192 1 26 HELIX 10 AB1 ASN A 202 GLY A 211 1 10 HELIX 11 AB2 LEU A 222 GLU A 224 5 3 HELIX 12 AB3 SER A 225 SER A 232 1 8 HELIX 13 AB4 HIS A 235 ILE A 239 5 5 HELIX 14 AB5 GLY A 243 ALA A 252 1 10 HELIX 15 AB6 SER A 257 PHE A 264 1 8 HELIX 16 AB7 SER A 265 GLY A 274 1 10 HELIX 17 AB8 GLY A 274 PHE A 286 1 13 HELIX 18 AB9 GLU A 314 GLU A 316 5 3 HELIX 19 AC1 ALA A 317 GLY A 336 1 20 HELIX 20 AC2 SER A 366 GLN A 370 5 5 HELIX 21 AC3 MET A 380 ASN A 393 1 14 SHEET 1 AA1 6 VAL A 120 LEU A 123 0 SHEET 2 AA1 6 GLU A 127 ASP A 131 -1 O PHE A 129 N GLU A 121 SHEET 3 AA1 6 ILE A 30 LEU A 35 -1 N VAL A 33 O ASN A 128 SHEET 4 AA1 6 GLY A 195 ALA A 200 -1 O CYS A 196 N ASP A 34 SHEET 5 AA1 6 GLN A 218 VAL A 220 1 O THR A 219 N VAL A 199 SHEET 6 AA1 6 HIS A 156 VAL A 157 1 N HIS A 156 O GLN A 218 SHEET 1 AA2 4 MET A 79 ASN A 80 0 SHEET 2 AA2 4 LEU A 62 CYS A 66 -1 N VAL A 63 O MET A 79 SHEET 3 AA2 4 LEU A 55 GLN A 59 -1 N VAL A 57 O THR A 65 SHEET 4 AA2 4 VAL A 92 ASN A 95 1 O VAL A 94 N GLN A 58 SHEET 1 AA3 4 SER A 301 SER A 307 0 SHEET 2 AA3 4 LEU A 405 LYS A 414 -1 O PHE A 410 N PHE A 302 SHEET 3 AA3 4 LYS A 338 ARG A 347 -1 N LYS A 338 O LYS A 414 SHEET 4 AA3 4 ARG A 357 PRO A 363 -1 O CYS A 362 N VAL A 342 LINK OD1 ASP A 34 MG MG A 502 1555 1555 2.38 LINK OD1 ASP A 34 MG MG A 503 1555 1555 2.26 LINK OD2 ASP A 34 MG MG A 503 1555 1555 2.91 LINK O LEU A 35 MG MG A 502 1555 1555 2.46 LINK OD2 ASP A 126 MG MG A 502 1555 1555 2.43 LINK OD2 ASP A 126 MG MG A 503 1555 1555 2.52 LINK OE2 GLU A 127 MG MG A 503 1555 1555 2.78 LINK O LYS A 237 MG MG A 504 1555 1555 2.25 LINK O ILE A 239 MG MG A 504 1555 1555 2.50 LINK O ILE A 242 MG MG A 504 1555 1555 2.61 LINK O3 PO4 A 501 MG MG A 502 1555 1555 2.48 LINK MG MG A 502 OP1 DT B 19 1555 1555 2.54 LINK MG MG A 503 OP1 DT B 19 1555 1555 2.44 LINK MG MG A 504 OP1 DC B 17 1555 1555 2.40 CRYST1 98.190 98.190 202.340 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010184 0.005880 0.000000 0.00000 SCALE2 0.000000 0.011760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004942 0.00000 TER 5873 LYS A 414 TER 6312 DT B 19 HETATM 6313 P PO4 A 501 1.880 17.427 13.797 1.00 64.11 P HETATM 6314 O1 PO4 A 501 0.949 17.841 12.682 1.00 63.48 O HETATM 6315 O2 PO4 A 501 1.165 17.561 15.117 1.00 53.71 O HETATM 6316 O3 PO4 A 501 3.094 18.323 13.777 1.00 48.36 O1- HETATM 6317 O4 PO4 A 501 2.310 15.992 13.616 1.00 51.86 O HETATM 6318 MG MG A 502 5.090 19.510 14.640 1.00 51.46 MG HETATM 6319 MG MG A 503 5.671 21.550 13.577 1.00 38.44 MG HETATM 6320 MG MG A 504 1.341 30.816 6.344 1.00 43.95 MG HETATM 6321 P PO4 B 101 1.654 19.948 16.730 0.50 47.03 P HETATM 6322 O1 PO4 B 101 3.026 19.613 17.267 0.50 46.91 O HETATM 6323 O2 PO4 B 101 1.722 20.057 15.228 0.50 51.31 O HETATM 6324 O3 PO4 B 101 0.686 18.861 17.124 0.50 49.20 O1- HETATM 6325 O4 PO4 B 101 1.168 21.261 17.293 0.50 53.45 O HETATM 6326 O HOH A 601 4.429 30.717 32.517 1.00 44.39 O HETATM 6327 O HOH A 602 3.575 14.979 12.358 1.00 45.85 O HETATM 6328 O HOH A 603 -5.314 19.564 32.044 1.00 52.93 O HETATM 6329 O HOH A 604 7.822 25.008 16.202 1.00 33.68 O HETATM 6330 O HOH A 605 8.649 51.743 29.158 1.00 48.91 O HETATM 6331 O HOH A 606 22.937 50.120 38.563 1.00 73.89 O HETATM 6332 O HOH A 607 -7.246 41.621 33.106 1.00 65.23 O HETATM 6333 O HOH A 608 -8.650 31.665 -7.342 1.00 42.63 O HETATM 6334 O HOH A 609 17.980 5.145 4.936 1.00 43.14 O HETATM 6335 O HOH A 610 17.359 19.084 -11.832 1.00 35.39 O HETATM 6336 O HOH A 611 26.002 21.267 5.861 1.00 43.61 O HETATM 6337 O HOH A 612 7.863 47.940 24.830 1.00 53.47 O HETATM 6338 O HOH A 613 12.225 13.223 -13.092 1.00 44.10 O HETATM 6339 O HOH A 614 21.485 24.717 20.127 1.00 38.33 O HETATM 6340 O HOH A 615 20.000 27.061 19.373 1.00 40.50 O HETATM 6341 O HOH A 616 13.958 29.644 23.029 1.00 38.17 O HETATM 6342 O HOH A 617 -0.827 33.484 27.015 1.00 49.50 O HETATM 6343 O HOH A 618 6.207 28.854 31.096 1.00 48.33 O HETATM 6344 O HOH A 619 -0.881 39.242 42.033 1.00 65.81 O HETATM 6345 O HOH A 620 8.909 27.835 32.053 1.00 36.16 O HETATM 6346 O HOH A 621 14.848 30.496 -4.066 1.00 38.16 O HETATM 6347 O HOH A 622 18.343 33.188 17.661 1.00 35.69 O HETATM 6348 O HOH A 623 20.781 16.729 22.563 1.00 34.64 O HETATM 6349 O HOH A 624 12.802 11.228 1.300 1.00 39.15 O HETATM 6350 O HOH A 625 6.198 19.502 8.305 1.00 40.41 O HETATM 6351 O HOH A 626 7.243 13.983 4.762 1.00 35.14 O HETATM 6352 O HOH A 627 -2.326 31.908 11.710 1.00 52.75 O HETATM 6353 O HOH A 628 17.617 29.777 20.534 1.00 33.93 O HETATM 6354 O HOH A 629 21.840 8.369 13.023 1.00 46.75 O HETATM 6355 O HOH A 630 21.093 27.163 16.519 1.00 42.57 O HETATM 6356 O HOH A 631 3.928 13.024 -3.250 1.00 32.89 O HETATM 6357 O HOH A 632 15.817 29.338 2.027 1.00 34.24 O HETATM 6358 O HOH A 633 17.488 10.801 26.014 1.00 34.51 O HETATM 6359 O HOH A 634 -4.478 37.159 -10.276 1.00 38.40 O HETATM 6360 O HOH A 635 19.486 22.181 -4.894 1.00 34.08 O HETATM 6361 O HOH A 636 0.765 16.777 -3.356 1.00 35.75 O HETATM 6362 O HOH A 637 15.940 14.021 -15.887 1.00 39.04 O HETATM 6363 O HOH A 638 16.203 15.844 -14.037 1.00 42.42 O HETATM 6364 O HOH A 639 12.875 19.621 14.943 1.00 36.05 O HETATM 6365 O HOH A 640 13.988 21.856 18.411 1.00 32.16 O HETATM 6366 O HOH A 641 11.243 30.429 16.647 1.00 36.58 O HETATM 6367 O HOH A 642 26.231 13.508 -14.620 1.00 54.63 O HETATM 6368 O HOH A 643 6.057 45.828 2.731 1.00 57.92 O HETATM 6369 O HOH A 644 -3.931 27.267 -5.095 1.00 39.66 O HETATM 6370 O HOH A 645 -6.250 43.329 33.377 1.00 73.10 O HETATM 6371 O HOH A 646 10.068 15.438 -6.370 1.00 34.68 O HETATM 6372 O HOH A 647 10.713 6.383 -2.355 1.00 45.73 O HETATM 6373 O HOH A 648 13.872 21.234 -4.252 1.00 30.44 O HETATM 6374 O HOH A 649 16.916 41.759 22.566 1.00 48.61 O HETATM 6375 O HOH A 650 21.546 28.733 3.824 1.00 30.04 O HETATM 6376 O HOH A 651 12.975 24.194 17.497 1.00 31.63 O HETATM 6377 O HOH A 652 -2.602 27.768 -7.572 1.00 34.08 O HETATM 6378 O HOH A 653 19.823 24.430 -6.426 1.00 35.90 O HETATM 6379 O HOH A 654 8.618 7.774 -3.153 1.00 36.77 O HETATM 6380 O HOH A 655 21.621 18.059 24.691 1.00 39.27 O HETATM 6381 O HOH A 656 2.965 15.038 -12.094 1.00 34.09 O HETATM 6382 O HOH A 657 11.704 41.775 25.574 1.00 52.56 O HETATM 6383 O HOH A 658 1.671 13.247 -10.919 1.00 35.31 O HETATM 6384 O HOH A 659 11.116 30.472 4.462 1.00 41.33 O HETATM 6385 O HOH A 660 15.630 26.931 -4.422 1.00 42.82 O HETATM 6386 O HOH A 661 -6.334 37.267 -8.793 1.00 47.68 O HETATM 6387 O HOH A 662 13.653 4.285 2.267 1.00 35.81 O HETATM 6388 O HOH A 663 5.981 7.573 -2.324 1.00 39.93 O HETATM 6389 O HOH A 664 1.987 10.669 18.442 1.00 56.24 O HETATM 6390 O HOH A 665 -5.196 39.625 -11.346 1.00 48.58 O HETATM 6391 O HOH A 666 -1.631 16.961 -4.383 1.00 39.72 O HETATM 6392 O HOH B 201 -1.728 37.913 9.576 1.00 61.09 O HETATM 6393 O HOH B 202 15.129 49.545 17.535 1.00 45.50 O HETATM 6394 O HOH B 203 21.248 48.055 25.579 1.00 45.59 O HETATM 6395 O HOH B 204 2.709 26.659 23.703 1.00 35.17 O HETATM 6396 O HOH B 205 26.908 53.479 20.703 1.00 49.22 O HETATM 6397 O HOH B 206 6.541 26.696 19.335 1.00 34.74 O HETATM 6398 O HOH B 207 29.430 55.059 14.359 1.00 37.32 O HETATM 6399 O HOH B 208 25.890 67.149 2.163 1.00 44.40 O HETATM 6400 O HOH B 209 5.874 54.949 26.970 1.00 54.08 O HETATM 6401 O HOH B 210 1.756 30.822 11.774 1.00 32.87 O HETATM 6402 O HOH B 211 3.219 25.952 7.275 1.00 43.33 O HETATM 6403 O HOH B 212 23.380 69.273 1.834 1.00 37.40 O HETATM 6404 O HOH B 213 28.775 51.537 18.439 1.00 47.96 O HETATM 6405 O HOH B 214 9.324 31.338 16.343 1.00 37.94 O HETATM 6406 O HOH B 215 0.804 28.692 9.271 1.00 44.11 O HETATM 6407 O HOH B 216 28.394 62.369 6.053 1.00 41.73 O HETATM 6408 O HOH B 217 27.899 63.664 13.049 1.00 33.11 O CONECT 136 6318 6319 CONECT 137 6319 CONECT 145 6318 CONECT 1650 6318 6319 CONECT 1663 6319 CONECT 3372 6320 CONECT 3409 6320 CONECT 3449 6320 CONECT 6255 6320 CONECT 6293 6318 6319 CONECT 6313 6314 6315 6316 6317 CONECT 6314 6313 CONECT 6315 6313 CONECT 6316 6313 6318 CONECT 6317 6313 CONECT 6318 136 145 1650 6293 CONECT 6318 6316 CONECT 6319 136 137 1650 1663 CONECT 6319 6293 CONECT 6320 3372 3409 3449 6255 CONECT 6321 6322 6323 6324 6325 CONECT 6322 6321 CONECT 6323 6321 CONECT 6324 6321 CONECT 6325 6321 MASTER 404 0 5 21 14 0 0 6 3337 2 25 35 END