HEADER METAL BINDING PROTEIN 26-SEP-24 9DRZ TITLE STRUCTURE OF LICHTHEIMIA CORYMBIFERA KINASE IN COMPLEX WITH GDP AND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATEHYDROLASE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LICHTHEIMIA CORYMBIFERA; SOURCE 3 ORGANISM_TAXID: 42458; SOURCE 4 GENE: LCOR_04030.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 561; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS KINASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.M.WIMBERLY-GARD,S.SHUMAN REVDAT 1 16-OCT-24 9DRZ 0 JRNL AUTH G.M.WIMBERLY-GARD,S.SHUMAN JRNL TITL STRUCTURE OF LICHTHEIMIA CORYMBIFERA KINASE IN COMPLEX WITH JRNL TITL 2 GDP AND MG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.07000 REMARK 3 B22 (A**2) : 2.07000 REMARK 3 B33 (A**2) : -6.70000 REMARK 3 B12 (A**2) : 1.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.633 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.048 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3986 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3634 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5421 ; 1.320 ; 1.840 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8315 ; 0.473 ; 1.771 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 6.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ;14.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;14.622 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4803 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 947 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 3.804 ; 6.143 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1937 ; 3.802 ; 6.143 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 5.955 ;11.033 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2417 ; 5.954 ;11.033 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2049 ; 4.123 ; 6.473 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2037 ; 4.107 ; 6.483 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3006 ; 6.506 ;11.785 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4278 ; 8.583 ;56.700 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4273 ; 8.584 ;56.730 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9DRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000288684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97936 REMARK 200 MONOCHROMATOR : SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20318 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 40% V/V REMARK 280 POLYETHYLENE GLYCOL 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.15533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.57767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.36650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.78883 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 138.94417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.15533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.57767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.78883 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.36650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 138.94417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 THR A 108 OG1 CG2 REMARK 470 VAL A 110 CG1 CG2 REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 ASN A 134 CG OD1 ND2 REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 157 CG CD OE1 NE2 REMARK 470 LEU B 163 CG CD1 CD2 REMARK 470 ASN C 3 CG OD1 ND2 REMARK 470 ARG C 4 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 37 CG OD1 OD2 REMARK 470 LYS C 42 CG CD CE NZ REMARK 470 ARG C 46 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 55 CG CD OE1 NE2 REMARK 470 GLU C 67 CG CD OE1 OE2 REMARK 470 GLN C 68 CG CD OE1 NE2 REMARK 470 ARG C 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 93 CG CD CE NZ REMARK 470 GLN C 94 CG CD OE1 NE2 REMARK 470 VAL C 110 CG1 CG2 REMARK 470 ARG C 121 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 163 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 107 152.64 -46.30 REMARK 500 ALA B 91 125.72 -39.39 REMARK 500 THR B 130 -168.48 -119.89 REMARK 500 ASN B 134 -119.03 57.49 REMARK 500 GLU B 135 -43.99 70.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 62 0.24 SIDE CHAIN REMARK 500 ARG C 41 0.29 SIDE CHAIN REMARK 500 ARG C 70 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O2B 84.6 REMARK 620 3 HOH A 302 O 173.8 101.2 REMARK 620 4 HOH A 304 O 85.1 98.7 96.0 REMARK 620 5 HOH A 305 O 87.5 94.3 90.0 164.4 REMARK 620 6 HOH A 307 O 92.1 176.5 82.1 79.7 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 201 O3B 75.0 REMARK 620 3 HOH B 301 O 85.0 95.9 REMARK 620 4 HOH B 302 O 87.5 83.7 172.4 REMARK 620 5 HOH B 303 O 163.0 89.6 104.1 83.5 REMARK 620 6 HOH B 304 O 90.6 158.9 98.1 80.4 102.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 GDP C 201 O2B 91.6 REMARK 620 3 HOH C 301 O 75.1 165.2 REMARK 620 4 HOH C 302 O 151.8 84.1 110.7 REMARK 620 5 HOH C 303 O 77.5 100.4 83.4 75.9 REMARK 620 6 HOH C 304 O 102.3 84.8 91.5 105.1 174.8 REMARK 620 N 1 2 3 4 5 DBREF1 9DRZ A 1 163 UNP A0A068RQY7_9FUNG DBREF2 9DRZ A A0A068RQY7 1 163 DBREF1 9DRZ B 1 163 UNP A0A068RQY7_9FUNG DBREF2 9DRZ B A0A068RQY7 1 163 DBREF1 9DRZ C 1 163 UNP A0A068RQY7_9FUNG DBREF2 9DRZ C A0A068RQY7 1 163 SEQADV 9DRZ GLY A -1 UNP A0A068RQY EXPRESSION TAG SEQADV 9DRZ SER A 0 UNP A0A068RQY EXPRESSION TAG SEQADV 9DRZ GLY B -1 UNP A0A068RQY EXPRESSION TAG SEQADV 9DRZ SER B 0 UNP A0A068RQY EXPRESSION TAG SEQADV 9DRZ GLY C -1 UNP A0A068RQY EXPRESSION TAG SEQADV 9DRZ SER C 0 UNP A0A068RQY EXPRESSION TAG SEQRES 1 A 165 GLY SER MET SER ASN ARG VAL LEU LEU LEU VAL GLY LEU SEQRES 2 A 165 PRO GLY SER GLY LYS SER THR PHE SER ASN LYS LEU VAL SEQRES 3 A 165 GLU LEU LYS PRO ASN TRP ARG ARG VAL ASN GLN ASP ASP SEQRES 4 A 165 LEU GLY SER ARG LYS ASN CYS GLU ARG HIS CYS ARG ARG SEQRES 5 A 165 PHE LEU GLU GLN GLN LEU ASN VAL VAL ILE ASP ARG CYS SEQRES 6 A 165 ASN PHE ASP GLU GLN GLN ARG SER THR TRP ILE ARG ILE SEQRES 7 A 165 ALA ARG GLU TYR ASN VAL PRO VAL ASP CYS VAL VAL LEU SEQRES 8 A 165 THR ALA ASP LYS GLN THR CYS GLY GLU ARG ILE LEU GLU SEQRES 9 A 165 ARG GLU ASP HIS PRO THR GLY VAL GLN GLY ASN GLU GLY SEQRES 10 A 165 LEU ASN ILE LEU HIS ARG PHE VAL MET ASN TYR ILE PRO SEQRES 11 A 165 PRO THR TYR THR THR ASN GLU GLY ILE ARG ARG ILE ILE SEQRES 12 A 165 HIS LEU ASP PRO SER PRO GLU PRO TYR CYS THR PRO GLU SEQRES 13 A 165 ARG VAL GLN SER VAL LEU ALA GLN LEU SEQRES 1 B 165 GLY SER MET SER ASN ARG VAL LEU LEU LEU VAL GLY LEU SEQRES 2 B 165 PRO GLY SER GLY LYS SER THR PHE SER ASN LYS LEU VAL SEQRES 3 B 165 GLU LEU LYS PRO ASN TRP ARG ARG VAL ASN GLN ASP ASP SEQRES 4 B 165 LEU GLY SER ARG LYS ASN CYS GLU ARG HIS CYS ARG ARG SEQRES 5 B 165 PHE LEU GLU GLN GLN LEU ASN VAL VAL ILE ASP ARG CYS SEQRES 6 B 165 ASN PHE ASP GLU GLN GLN ARG SER THR TRP ILE ARG ILE SEQRES 7 B 165 ALA ARG GLU TYR ASN VAL PRO VAL ASP CYS VAL VAL LEU SEQRES 8 B 165 THR ALA ASP LYS GLN THR CYS GLY GLU ARG ILE LEU GLU SEQRES 9 B 165 ARG GLU ASP HIS PRO THR GLY VAL GLN GLY ASN GLU GLY SEQRES 10 B 165 LEU ASN ILE LEU HIS ARG PHE VAL MET ASN TYR ILE PRO SEQRES 11 B 165 PRO THR TYR THR THR ASN GLU GLY ILE ARG ARG ILE ILE SEQRES 12 B 165 HIS LEU ASP PRO SER PRO GLU PRO TYR CYS THR PRO GLU SEQRES 13 B 165 ARG VAL GLN SER VAL LEU ALA GLN LEU SEQRES 1 C 165 GLY SER MET SER ASN ARG VAL LEU LEU LEU VAL GLY LEU SEQRES 2 C 165 PRO GLY SER GLY LYS SER THR PHE SER ASN LYS LEU VAL SEQRES 3 C 165 GLU LEU LYS PRO ASN TRP ARG ARG VAL ASN GLN ASP ASP SEQRES 4 C 165 LEU GLY SER ARG LYS ASN CYS GLU ARG HIS CYS ARG ARG SEQRES 5 C 165 PHE LEU GLU GLN GLN LEU ASN VAL VAL ILE ASP ARG CYS SEQRES 6 C 165 ASN PHE ASP GLU GLN GLN ARG SER THR TRP ILE ARG ILE SEQRES 7 C 165 ALA ARG GLU TYR ASN VAL PRO VAL ASP CYS VAL VAL LEU SEQRES 8 C 165 THR ALA ASP LYS GLN THR CYS GLY GLU ARG ILE LEU GLU SEQRES 9 C 165 ARG GLU ASP HIS PRO THR GLY VAL GLN GLY ASN GLU GLY SEQRES 10 C 165 LEU ASN ILE LEU HIS ARG PHE VAL MET ASN TYR ILE PRO SEQRES 11 C 165 PRO THR TYR THR THR ASN GLU GLY ILE ARG ARG ILE ILE SEQRES 12 C 165 HIS LEU ASP PRO SER PRO GLU PRO TYR CYS THR PRO GLU SEQRES 13 C 165 ARG VAL GLN SER VAL LEU ALA GLN LEU HET GDP A 201 28 HET MG A 202 1 HET GDP B 201 28 HET MG B 202 1 HET GDP C 201 28 HET MG C 202 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 GDP 3(C10 H15 N5 O11 P2) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *23(H2 O) HELIX 1 AA1 GLY A 15 LYS A 27 1 13 HELIX 2 AA2 GLN A 35 GLY A 39 1 5 HELIX 3 AA3 SER A 40 GLN A 54 1 15 HELIX 4 AA4 ASP A 66 TYR A 80 1 15 HELIX 5 AA5 ASP A 92 GLU A 102 1 11 HELIX 6 AA6 GLY A 115 MET A 124 1 10 HELIX 7 AA7 THR A 152 ALA A 161 1 10 HELIX 8 AA8 GLY B 15 LYS B 27 1 13 HELIX 9 AA9 GLN B 35 GLY B 39 1 5 HELIX 10 AB1 SER B 40 GLN B 54 1 15 HELIX 11 AB2 ASP B 66 TYR B 80 1 15 HELIX 12 AB3 ASP B 92 GLU B 104 1 13 HELIX 13 AB4 GLU B 114 ASN B 125 1 12 HELIX 14 AB5 THR B 152 ALA B 161 1 10 HELIX 15 AB6 GLY C 15 LYS C 27 1 13 HELIX 16 AB7 GLN C 35 GLY C 39 1 5 HELIX 17 AB8 SER C 40 GLU C 53 1 14 HELIX 18 AB9 ASP C 66 TYR C 80 1 15 HELIX 19 AC1 ASP C 92 ARG C 103 1 12 HELIX 20 AC2 GLU C 114 ASN C 125 1 12 HELIX 21 AC3 THR C 152 ALA C 161 1 10 SHEET 1 AA1 5 TRP A 30 ASN A 34 0 SHEET 2 AA1 5 ASN A 57 ASP A 61 1 O ASP A 61 N VAL A 33 SHEET 3 AA1 5 VAL A 5 VAL A 9 1 N LEU A 6 O ILE A 60 SHEET 4 AA1 5 VAL A 84 LEU A 89 1 O VAL A 87 N LEU A 7 SHEET 5 AA1 5 ILE A 140 LEU A 143 1 O LEU A 143 N VAL A 88 SHEET 1 AA2 5 TRP B 30 ASN B 34 0 SHEET 2 AA2 5 ASN B 57 ASP B 61 1 O VAL B 59 N VAL B 33 SHEET 3 AA2 5 VAL B 5 VAL B 9 1 N LEU B 6 O VAL B 58 SHEET 4 AA2 5 VAL B 84 LEU B 89 1 O VAL B 87 N LEU B 7 SHEET 5 AA2 5 ILE B 140 LEU B 143 1 O ILE B 141 N CYS B 86 SHEET 1 AA3 2 THR B 108 GLY B 109 0 SHEET 2 AA3 2 GLY B 112 ASN B 113 -1 O GLY B 112 N GLY B 109 SHEET 1 AA4 5 TRP C 30 ASN C 34 0 SHEET 2 AA4 5 ASN C 57 ASP C 61 1 O ASP C 61 N VAL C 33 SHEET 3 AA4 5 VAL C 5 VAL C 9 1 N LEU C 6 O ILE C 60 SHEET 4 AA4 5 VAL C 84 LEU C 89 1 O VAL C 87 N LEU C 7 SHEET 5 AA4 5 ARG C 139 LEU C 143 1 O LEU C 143 N VAL C 88 SHEET 1 AA5 2 THR C 108 GLY C 109 0 SHEET 2 AA5 2 GLY C 112 ASN C 113 -1 O GLY C 112 N GLY C 109 LINK OG SER A 17 MG MG A 202 1555 1555 2.00 LINK O2B GDP A 201 MG MG A 202 1555 1555 1.99 LINK MG MG A 202 O HOH A 302 1555 1555 1.99 LINK MG MG A 202 O HOH A 304 1555 1555 1.99 LINK MG MG A 202 O HOH A 305 1555 1555 2.00 LINK MG MG A 202 O HOH A 307 1555 1555 2.00 LINK OG SER B 17 MG MG B 202 1555 1555 1.99 LINK O3B GDP B 201 MG MG B 202 1555 1555 2.01 LINK MG MG B 202 O HOH B 301 1555 1555 2.02 LINK MG MG B 202 O HOH B 302 1555 1555 2.02 LINK MG MG B 202 O HOH B 303 1555 1555 1.99 LINK MG MG B 202 O HOH B 304 1555 1555 2.02 LINK OG SER C 17 MG MG C 202 1555 1555 1.99 LINK O2B GDP C 201 MG MG C 202 1555 1555 1.99 LINK MG MG C 202 O HOH C 301 1555 1555 2.00 LINK MG MG C 202 O HOH C 302 1555 1555 1.99 LINK MG MG C 202 O HOH C 303 1555 1555 1.99 LINK MG MG C 202 O HOH C 304 1555 1555 2.00 CRYST1 120.469 120.469 166.733 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008301 0.004793 0.000000 0.00000 SCALE2 0.000000 0.009585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005998 0.00000