data_9DT9 # _entry.id 9DT9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9DT9 pdb_00009dt9 10.2210/pdb9dt9/pdb WWPDB D_1000288768 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-04-23 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9DT9 _pdbx_database_status.recvd_initial_deposition_date 2024-09-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email dabaker@uw.edu _pdbx_contact_author.name_first David _pdbx_contact_author.name_last Baker _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7896-6217 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bera, A.K.' 1 ? 'Schlichthaerle, T.' 2 ? 'Kang, A.' 3 ? 'Baker, D.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'De novo design of TrkA specific agonists' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schlichthaerle, T.' 1 ? primary 'Baker, D.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 231_C2_TrkA 13254.232 2 ? ? ? ? 2 water nat water 18.015 109 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSGKEEIKEAIKKAVVRARVTGDPKYLEEAKALLEKLKELDEEDKDVEKFEKAIKQVEAELTLKEAKEVVKRLFEEGRPE DAAREAFEYLQKLLDIGSPEAVKELLQFLRELLGSG ; _entity_poly.pdbx_seq_one_letter_code_can ;MSGKEEIKEAIKKAVVRARVTGDPKYLEEAKALLEKLKELDEEDKDVEKFEKAIKQVEAELTLKEAKEVVKRLFEEGRPE DAAREAFEYLQKLLDIGSPEAVKELLQFLRELLGSG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLY n 1 4 LYS n 1 5 GLU n 1 6 GLU n 1 7 ILE n 1 8 LYS n 1 9 GLU n 1 10 ALA n 1 11 ILE n 1 12 LYS n 1 13 LYS n 1 14 ALA n 1 15 VAL n 1 16 VAL n 1 17 ARG n 1 18 ALA n 1 19 ARG n 1 20 VAL n 1 21 THR n 1 22 GLY n 1 23 ASP n 1 24 PRO n 1 25 LYS n 1 26 TYR n 1 27 LEU n 1 28 GLU n 1 29 GLU n 1 30 ALA n 1 31 LYS n 1 32 ALA n 1 33 LEU n 1 34 LEU n 1 35 GLU n 1 36 LYS n 1 37 LEU n 1 38 LYS n 1 39 GLU n 1 40 LEU n 1 41 ASP n 1 42 GLU n 1 43 GLU n 1 44 ASP n 1 45 LYS n 1 46 ASP n 1 47 VAL n 1 48 GLU n 1 49 LYS n 1 50 PHE n 1 51 GLU n 1 52 LYS n 1 53 ALA n 1 54 ILE n 1 55 LYS n 1 56 GLN n 1 57 VAL n 1 58 GLU n 1 59 ALA n 1 60 GLU n 1 61 LEU n 1 62 THR n 1 63 LEU n 1 64 LYS n 1 65 GLU n 1 66 ALA n 1 67 LYS n 1 68 GLU n 1 69 VAL n 1 70 VAL n 1 71 LYS n 1 72 ARG n 1 73 LEU n 1 74 PHE n 1 75 GLU n 1 76 GLU n 1 77 GLY n 1 78 ARG n 1 79 PRO n 1 80 GLU n 1 81 ASP n 1 82 ALA n 1 83 ALA n 1 84 ARG n 1 85 GLU n 1 86 ALA n 1 87 PHE n 1 88 GLU n 1 89 TYR n 1 90 LEU n 1 91 GLN n 1 92 LYS n 1 93 LEU n 1 94 LEU n 1 95 ASP n 1 96 ILE n 1 97 GLY n 1 98 SER n 1 99 PRO n 1 100 GLU n 1 101 ALA n 1 102 VAL n 1 103 LYS n 1 104 GLU n 1 105 LEU n 1 106 LEU n 1 107 GLN n 1 108 PHE n 1 109 LEU n 1 110 ARG n 1 111 GLU n 1 112 LEU n 1 113 LEU n 1 114 GLY n 1 115 SER n 1 116 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 116 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 GLY 3 2 2 GLY GLY A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 VAL 16 15 15 VAL VAL A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 TYR 26 25 25 TYR TYR A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 VAL 47 46 46 VAL VAL A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 PHE 50 49 49 PHE PHE A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 GLU 58 57 57 GLU GLU A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 LYS 64 63 63 LYS LYS A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 PHE 74 73 73 PHE PHE A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 ARG 78 77 77 ARG ARG A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 ARG 84 83 83 ARG ARG A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 PHE 87 86 86 PHE PHE A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 TYR 89 88 88 TYR TYR A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 PRO 99 98 98 PRO PRO A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 GLN 107 106 106 GLN GLN A . n A 1 108 PHE 108 107 107 PHE PHE A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 ARG 110 109 109 ARG ARG A . n A 1 111 GLU 111 110 110 GLU GLU A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 GLY 114 113 ? ? ? A . n A 1 115 SER 115 114 ? ? ? A . n A 1 116 GLY 116 115 ? ? ? A . n B 1 1 MET 1 0 ? ? ? B . n B 1 2 SER 2 1 1 SER SER B . n B 1 3 GLY 3 2 2 GLY GLY B . n B 1 4 LYS 4 3 3 LYS LYS B . n B 1 5 GLU 5 4 4 GLU GLU B . n B 1 6 GLU 6 5 5 GLU GLU B . n B 1 7 ILE 7 6 6 ILE ILE B . n B 1 8 LYS 8 7 7 LYS LYS B . n B 1 9 GLU 9 8 8 GLU GLU B . n B 1 10 ALA 10 9 9 ALA ALA B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 LYS 12 11 11 LYS LYS B . n B 1 13 LYS 13 12 12 LYS LYS B . n B 1 14 ALA 14 13 13 ALA ALA B . n B 1 15 VAL 15 14 14 VAL VAL B . n B 1 16 VAL 16 15 15 VAL VAL B . n B 1 17 ARG 17 16 16 ARG ARG B . n B 1 18 ALA 18 17 17 ALA ALA B . n B 1 19 ARG 19 18 18 ARG ARG B . n B 1 20 VAL 20 19 19 VAL VAL B . n B 1 21 THR 21 20 20 THR THR B . n B 1 22 GLY 22 21 21 GLY GLY B . n B 1 23 ASP 23 22 22 ASP ASP B . n B 1 24 PRO 24 23 23 PRO PRO B . n B 1 25 LYS 25 24 24 LYS LYS B . n B 1 26 TYR 26 25 25 TYR TYR B . n B 1 27 LEU 27 26 26 LEU LEU B . n B 1 28 GLU 28 27 27 GLU GLU B . n B 1 29 GLU 29 28 28 GLU GLU B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 LYS 31 30 30 LYS LYS B . n B 1 32 ALA 32 31 31 ALA ALA B . n B 1 33 LEU 33 32 32 LEU LEU B . n B 1 34 LEU 34 33 33 LEU LEU B . n B 1 35 GLU 35 34 34 GLU GLU B . n B 1 36 LYS 36 35 35 LYS LYS B . n B 1 37 LEU 37 36 36 LEU LEU B . n B 1 38 LYS 38 37 37 LYS LYS B . n B 1 39 GLU 39 38 38 GLU GLU B . n B 1 40 LEU 40 39 39 LEU LEU B . n B 1 41 ASP 41 40 40 ASP ASP B . n B 1 42 GLU 42 41 41 GLU GLU B . n B 1 43 GLU 43 42 42 GLU GLU B . n B 1 44 ASP 44 43 43 ASP ASP B . n B 1 45 LYS 45 44 44 LYS LYS B . n B 1 46 ASP 46 45 45 ASP ASP B . n B 1 47 VAL 47 46 46 VAL VAL B . n B 1 48 GLU 48 47 47 GLU GLU B . n B 1 49 LYS 49 48 48 LYS LYS B . n B 1 50 PHE 50 49 49 PHE PHE B . n B 1 51 GLU 51 50 50 GLU GLU B . n B 1 52 LYS 52 51 51 LYS LYS B . n B 1 53 ALA 53 52 52 ALA ALA B . n B 1 54 ILE 54 53 53 ILE ILE B . n B 1 55 LYS 55 54 54 LYS LYS B . n B 1 56 GLN 56 55 55 GLN GLN B . n B 1 57 VAL 57 56 56 VAL VAL B . n B 1 58 GLU 58 57 57 GLU GLU B . n B 1 59 ALA 59 58 58 ALA ALA B . n B 1 60 GLU 60 59 59 GLU GLU B . n B 1 61 LEU 61 60 60 LEU LEU B . n B 1 62 THR 62 61 61 THR THR B . n B 1 63 LEU 63 62 62 LEU LEU B . n B 1 64 LYS 64 63 63 LYS LYS B . n B 1 65 GLU 65 64 64 GLU GLU B . n B 1 66 ALA 66 65 65 ALA ALA B . n B 1 67 LYS 67 66 66 LYS LYS B . n B 1 68 GLU 68 67 67 GLU GLU B . n B 1 69 VAL 69 68 68 VAL VAL B . n B 1 70 VAL 70 69 69 VAL VAL B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 ARG 72 71 71 ARG ARG B . n B 1 73 LEU 73 72 72 LEU LEU B . n B 1 74 PHE 74 73 73 PHE PHE B . n B 1 75 GLU 75 74 74 GLU GLU B . n B 1 76 GLU 76 75 75 GLU GLU B . n B 1 77 GLY 77 76 76 GLY GLY B . n B 1 78 ARG 78 77 77 ARG ARG B . n B 1 79 PRO 79 78 78 PRO PRO B . n B 1 80 GLU 80 79 79 GLU GLU B . n B 1 81 ASP 81 80 80 ASP ASP B . n B 1 82 ALA 82 81 81 ALA ALA B . n B 1 83 ALA 83 82 82 ALA ALA B . n B 1 84 ARG 84 83 83 ARG ARG B . n B 1 85 GLU 85 84 84 GLU GLU B . n B 1 86 ALA 86 85 85 ALA ALA B . n B 1 87 PHE 87 86 86 PHE PHE B . n B 1 88 GLU 88 87 87 GLU GLU B . n B 1 89 TYR 89 88 88 TYR TYR B . n B 1 90 LEU 90 89 89 LEU LEU B . n B 1 91 GLN 91 90 90 GLN GLN B . n B 1 92 LYS 92 91 91 LYS LYS B . n B 1 93 LEU 93 92 92 LEU LEU B . n B 1 94 LEU 94 93 93 LEU LEU B . n B 1 95 ASP 95 94 94 ASP ASP B . n B 1 96 ILE 96 95 95 ILE ILE B . n B 1 97 GLY 97 96 96 GLY GLY B . n B 1 98 SER 98 97 97 SER SER B . n B 1 99 PRO 99 98 98 PRO PRO B . n B 1 100 GLU 100 99 99 GLU GLU B . n B 1 101 ALA 101 100 100 ALA ALA B . n B 1 102 VAL 102 101 101 VAL VAL B . n B 1 103 LYS 103 102 102 LYS LYS B . n B 1 104 GLU 104 103 103 GLU GLU B . n B 1 105 LEU 105 104 104 LEU LEU B . n B 1 106 LEU 106 105 105 LEU LEU B . n B 1 107 GLN 107 106 106 GLN GLN B . n B 1 108 PHE 108 107 107 PHE PHE B . n B 1 109 LEU 109 108 108 LEU LEU B . n B 1 110 ARG 110 109 109 ARG ARG B . n B 1 111 GLU 111 110 110 GLU GLU B . n B 1 112 LEU 112 111 111 LEU LEU B . n B 1 113 LEU 113 112 112 LEU LEU B . n B 1 114 GLY 114 113 ? ? ? B . n B 1 115 SER 115 114 ? ? ? B . n B 1 116 GLY 116 115 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 82 HOH HOH A . C 2 HOH 2 202 71 HOH HOH A . C 2 HOH 3 203 101 HOH HOH A . C 2 HOH 4 204 29 HOH HOH A . C 2 HOH 5 205 24 HOH HOH A . C 2 HOH 6 206 15 HOH HOH A . C 2 HOH 7 207 22 HOH HOH A . C 2 HOH 8 208 5 HOH HOH A . C 2 HOH 9 209 4 HOH HOH A . C 2 HOH 10 210 31 HOH HOH A . C 2 HOH 11 211 21 HOH HOH A . C 2 HOH 12 212 80 HOH HOH A . C 2 HOH 13 213 94 HOH HOH A . C 2 HOH 14 214 25 HOH HOH A . C 2 HOH 15 215 37 HOH HOH A . C 2 HOH 16 216 14 HOH HOH A . C 2 HOH 17 217 19 HOH HOH A . C 2 HOH 18 218 20 HOH HOH A . C 2 HOH 19 219 36 HOH HOH A . C 2 HOH 20 220 66 HOH HOH A . C 2 HOH 21 221 60 HOH HOH A . C 2 HOH 22 222 6 HOH HOH A . C 2 HOH 23 223 75 HOH HOH A . C 2 HOH 24 224 40 HOH HOH A . C 2 HOH 25 225 83 HOH HOH A . C 2 HOH 26 226 99 HOH HOH A . C 2 HOH 27 227 43 HOH HOH A . C 2 HOH 28 228 105 HOH HOH A . C 2 HOH 29 229 58 HOH HOH A . C 2 HOH 30 230 26 HOH HOH A . C 2 HOH 31 231 47 HOH HOH A . C 2 HOH 32 232 86 HOH HOH A . C 2 HOH 33 233 102 HOH HOH A . C 2 HOH 34 234 12 HOH HOH A . C 2 HOH 35 235 33 HOH HOH A . C 2 HOH 36 236 30 HOH HOH A . C 2 HOH 37 237 84 HOH HOH A . C 2 HOH 38 238 34 HOH HOH A . C 2 HOH 39 239 50 HOH HOH A . C 2 HOH 40 240 68 HOH HOH A . C 2 HOH 41 241 49 HOH HOH A . C 2 HOH 42 242 87 HOH HOH A . C 2 HOH 43 243 38 HOH HOH A . C 2 HOH 44 244 11 HOH HOH A . C 2 HOH 45 245 100 HOH HOH A . C 2 HOH 46 246 45 HOH HOH A . C 2 HOH 47 247 18 HOH HOH A . C 2 HOH 48 248 108 HOH HOH A . C 2 HOH 49 249 53 HOH HOH A . C 2 HOH 50 250 103 HOH HOH A . C 2 HOH 51 251 109 HOH HOH A . C 2 HOH 52 252 77 HOH HOH A . C 2 HOH 53 253 89 HOH HOH A . C 2 HOH 54 254 79 HOH HOH A . C 2 HOH 55 255 92 HOH HOH A . C 2 HOH 56 256 39 HOH HOH A . C 2 HOH 57 257 64 HOH HOH A . C 2 HOH 58 258 96 HOH HOH A . C 2 HOH 59 259 85 HOH HOH A . C 2 HOH 60 260 59 HOH HOH A . C 2 HOH 61 261 57 HOH HOH A . C 2 HOH 62 262 81 HOH HOH A . C 2 HOH 63 263 56 HOH HOH A . D 2 HOH 1 201 61 HOH HOH B . D 2 HOH 2 202 1 HOH HOH B . D 2 HOH 3 203 32 HOH HOH B . D 2 HOH 4 204 7 HOH HOH B . D 2 HOH 5 205 69 HOH HOH B . D 2 HOH 6 206 28 HOH HOH B . D 2 HOH 7 207 93 HOH HOH B . D 2 HOH 8 208 23 HOH HOH B . D 2 HOH 9 209 35 HOH HOH B . D 2 HOH 10 210 90 HOH HOH B . D 2 HOH 11 211 76 HOH HOH B . D 2 HOH 12 212 27 HOH HOH B . D 2 HOH 13 213 70 HOH HOH B . D 2 HOH 14 214 8 HOH HOH B . D 2 HOH 15 215 74 HOH HOH B . D 2 HOH 16 216 62 HOH HOH B . D 2 HOH 17 217 65 HOH HOH B . D 2 HOH 18 218 2 HOH HOH B . D 2 HOH 19 219 10 HOH HOH B . D 2 HOH 20 220 16 HOH HOH B . D 2 HOH 21 221 48 HOH HOH B . D 2 HOH 22 222 17 HOH HOH B . D 2 HOH 23 223 104 HOH HOH B . D 2 HOH 24 224 44 HOH HOH B . D 2 HOH 25 225 97 HOH HOH B . D 2 HOH 26 226 51 HOH HOH B . D 2 HOH 27 227 107 HOH HOH B . D 2 HOH 28 228 98 HOH HOH B . D 2 HOH 29 229 54 HOH HOH B . D 2 HOH 30 230 52 HOH HOH B . D 2 HOH 31 231 9 HOH HOH B . D 2 HOH 32 232 46 HOH HOH B . D 2 HOH 33 233 72 HOH HOH B . D 2 HOH 34 234 95 HOH HOH B . D 2 HOH 35 235 55 HOH HOH B . D 2 HOH 36 236 42 HOH HOH B . D 2 HOH 37 237 78 HOH HOH B . D 2 HOH 38 238 3 HOH HOH B . D 2 HOH 39 239 91 HOH HOH B . D 2 HOH 40 240 88 HOH HOH B . D 2 HOH 41 241 13 HOH HOH B . D 2 HOH 42 242 63 HOH HOH B . D 2 HOH 43 243 106 HOH HOH B . D 2 HOH 44 244 41 HOH HOH B . D 2 HOH 45 245 67 HOH HOH B . D 2 HOH 46 246 73 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_4761 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 94.090 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9DT9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.467 _cell.length_a_esd ? _cell.length_b 60.459 _cell.length_b_esd ? _cell.length_c 51.880 _cell.length_c_esd ? _cell.volume 129734.682 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9DT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9DT9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Magnesium chloride hexahydrate, 0.1 M Tris pH 8.5 and 25% w/v Polyethylene glycol 3,350' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details 'Horizontal pre-focus bimorph mirror & KB bimorph mirrors' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-10-13 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111) DCM' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97934 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 32.91 _reflns.entry_id 9DT9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 51.75 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13026 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.36 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.69 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.0596 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.1179 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.29 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1449 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.329 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.851 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.66 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.6443 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 43.06 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9DT9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.20 _refine.ls_d_res_low 51.75 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13026 _refine.ls_number_reflns_R_free 1303 _refine.ls_number_reflns_R_work 11723 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.37 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2320 _refine.ls_R_factor_R_free 0.2863 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2258 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.0111 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2942 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 51.75 _refine_hist.number_atoms_solvent 109 _refine_hist.number_atoms_total 1925 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1816 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0018 ? 1832 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.3324 ? 2444 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0293 ? 276 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0020 ? 316 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.4540 ? 748 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.20 2.29 . . 134 1315 99.66 . . . . 0.2696 . . . . . . . . . . . 0.3207 'X-RAY DIFFRACTION' 2.29 2.39 . . 145 1277 99.09 . . . . 0.2683 . . . . . . . . . . . 0.3114 'X-RAY DIFFRACTION' 2.39 2.52 . . 153 1284 99.58 . . . . 0.2623 . . . . . . . . . . . 0.3072 'X-RAY DIFFRACTION' 2.52 2.68 . . 139 1304 99.59 . . . . 0.2543 . . . . . . . . . . . 0.3345 'X-RAY DIFFRACTION' 2.68 2.88 . . 140 1307 99.52 . . . . 0.2678 . . . . . . . . . . . 0.3521 'X-RAY DIFFRACTION' 2.88 3.17 . . 153 1298 99.73 . . . . 0.2550 . . . . . . . . . . . 0.3060 'X-RAY DIFFRACTION' 3.17 3.63 . . 143 1309 99.52 . . . . 0.2160 . . . . . . . . . . . 0.2974 'X-RAY DIFFRACTION' 3.63 4.58 . . 151 1302 99.25 . . . . 0.1831 . . . . . . . . . . . 0.2689 'X-RAY DIFFRACTION' 4.58 51.75 . . 145 1327 98.46 . . . . 0.2068 . . . . . . . . . . . 0.2356 # _struct.entry_id 9DT9 _struct.title 'Crystal Structure of 231_C2_TrkA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9DT9 _struct_keywords.text 'de novo design, nanotemplating, binder design, TrkA signaling, pain, neuronal differentiation, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9DT9 _struct_ref.pdbx_db_accession 9DT9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9DT9 A 1 ? 116 ? 9DT9 0 ? 115 ? 0 115 2 1 9DT9 B 1 ? 116 ? 9DT9 0 ? 115 ? 0 115 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 2 ? GLY A 22 ? SER A 1 GLY A 21 1 ? 21 HELX_P HELX_P2 AA2 ASP A 23 ? ASP A 41 ? ASP A 22 ASP A 40 1 ? 19 HELX_P HELX_P3 AA3 ASP A 46 ? GLU A 76 ? ASP A 45 GLU A 75 1 ? 31 HELX_P HELX_P4 AA4 ARG A 78 ? GLY A 97 ? ARG A 77 GLY A 96 1 ? 20 HELX_P HELX_P5 AA5 SER A 98 ? LEU A 113 ? SER A 97 LEU A 112 1 ? 16 HELX_P HELX_P6 AA6 GLY B 3 ? GLY B 22 ? GLY B 2 GLY B 21 1 ? 20 HELX_P HELX_P7 AA7 ASP B 23 ? ASP B 41 ? ASP B 22 ASP B 40 1 ? 19 HELX_P HELX_P8 AA8 ASP B 46 ? GLU B 76 ? ASP B 45 GLU B 75 1 ? 31 HELX_P HELX_P9 AA9 ARG B 78 ? GLY B 97 ? ARG B 77 GLY B 96 1 ? 20 HELX_P HELX_P10 AB1 SER B 98 ? LEU B 113 ? SER B 97 LEU B 112 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 9DT9 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 3.60095864284 3.90222154987 11.950373751 0.278257490269 ? -0.00615890304343 ? -0.0217306531976 ? 0.21401899174 ? -0.0418793306482 ? 0.292323417275 ? 2.02600890446 ? 0.237122337477 ? -1.18114700574 ? 2.23131475359 ? -1.14176814313 ? 3.50976084698 ? 0.0457952374288 ? -0.0170441477293 ? 0.124148137462 ? -0.0658753622972 ? 0.036915308902 ? -0.154124700673 ? -0.23682883396 ? 0.0118169166401 ? -0.0806043473009 ? 2 'X-RAY DIFFRACTION' ? refined 17.1140895893 -7.76317919727 11.8700647771 0.249038264151 ? 0.0239936497813 ? 0.047623819937 ? 0.255610543809 ? 0.0286503667787 ? 0.25400696298 ? 3.83399019559 ? 0.540831868855 ? 1.01133353461 ? 2.72873517018 ? 1.16687213537 ? 3.00370614031 ? -0.0036996817401 ? -0.162284005542 ? -0.114987806311 ? 0.0281467084867 ? 0.0654929529511 ? 0.0396964395883 ? 0.232886473958 ? 0.132970951712 ? -0.0489307995304 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 1 ? A 112 A 112 ? ? '(chain A and resseq 1:112)' 2 'X-RAY DIFFRACTION' 2 B 1 B 1 ? B 112 B 112 ? ? '(chain B and resseq 1:112)' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A GLY 113 ? A GLY 114 3 1 Y 1 A SER 114 ? A SER 115 4 1 Y 1 A GLY 115 ? A GLY 116 5 1 Y 1 B MET 0 ? B MET 1 6 1 Y 1 B GLY 113 ? B GLY 114 7 1 Y 1 B SER 114 ? B SER 115 8 1 Y 1 B GLY 115 ? B GLY 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 GLU N N N N 77 GLU CA C N S 78 GLU C C N N 79 GLU O O N N 80 GLU CB C N N 81 GLU CG C N N 82 GLU CD C N N 83 GLU OE1 O N N 84 GLU OE2 O N N 85 GLU OXT O N N 86 GLU H H N N 87 GLU H2 H N N 88 GLU HA H N N 89 GLU HB2 H N N 90 GLU HB3 H N N 91 GLU HG2 H N N 92 GLU HG3 H N N 93 GLU HE2 H N N 94 GLU HXT H N N 95 GLY N N N N 96 GLY CA C N N 97 GLY C C N N 98 GLY O O N N 99 GLY OXT O N N 100 GLY H H N N 101 GLY H2 H N N 102 GLY HA2 H N N 103 GLY HA3 H N N 104 GLY HXT H N N 105 HOH O O N N 106 HOH H1 H N N 107 HOH H2 H N N 108 ILE N N N N 109 ILE CA C N S 110 ILE C C N N 111 ILE O O N N 112 ILE CB C N S 113 ILE CG1 C N N 114 ILE CG2 C N N 115 ILE CD1 C N N 116 ILE OXT O N N 117 ILE H H N N 118 ILE H2 H N N 119 ILE HA H N N 120 ILE HB H N N 121 ILE HG12 H N N 122 ILE HG13 H N N 123 ILE HG21 H N N 124 ILE HG22 H N N 125 ILE HG23 H N N 126 ILE HD11 H N N 127 ILE HD12 H N N 128 ILE HD13 H N N 129 ILE HXT H N N 130 LEU N N N N 131 LEU CA C N S 132 LEU C C N N 133 LEU O O N N 134 LEU CB C N N 135 LEU CG C N N 136 LEU CD1 C N N 137 LEU CD2 C N N 138 LEU OXT O N N 139 LEU H H N N 140 LEU H2 H N N 141 LEU HA H N N 142 LEU HB2 H N N 143 LEU HB3 H N N 144 LEU HG H N N 145 LEU HD11 H N N 146 LEU HD12 H N N 147 LEU HD13 H N N 148 LEU HD21 H N N 149 LEU HD22 H N N 150 LEU HD23 H N N 151 LEU HXT H N N 152 LYS N N N N 153 LYS CA C N S 154 LYS C C N N 155 LYS O O N N 156 LYS CB C N N 157 LYS CG C N N 158 LYS CD C N N 159 LYS CE C N N 160 LYS NZ N N N 161 LYS OXT O N N 162 LYS H H N N 163 LYS H2 H N N 164 LYS HA H N N 165 LYS HB2 H N N 166 LYS HB3 H N N 167 LYS HG2 H N N 168 LYS HG3 H N N 169 LYS HD2 H N N 170 LYS HD3 H N N 171 LYS HE2 H N N 172 LYS HE3 H N N 173 LYS HZ1 H N N 174 LYS HZ2 H N N 175 LYS HZ3 H N N 176 LYS HXT H N N 177 MET N N N N 178 MET CA C N S 179 MET C C N N 180 MET O O N N 181 MET CB C N N 182 MET CG C N N 183 MET SD S N N 184 MET CE C N N 185 MET OXT O N N 186 MET H H N N 187 MET H2 H N N 188 MET HA H N N 189 MET HB2 H N N 190 MET HB3 H N N 191 MET HG2 H N N 192 MET HG3 H N N 193 MET HE1 H N N 194 MET HE2 H N N 195 MET HE3 H N N 196 MET HXT H N N 197 PHE N N N N 198 PHE CA C N S 199 PHE C C N N 200 PHE O O N N 201 PHE CB C N N 202 PHE CG C Y N 203 PHE CD1 C Y N 204 PHE CD2 C Y N 205 PHE CE1 C Y N 206 PHE CE2 C Y N 207 PHE CZ C Y N 208 PHE OXT O N N 209 PHE H H N N 210 PHE H2 H N N 211 PHE HA H N N 212 PHE HB2 H N N 213 PHE HB3 H N N 214 PHE HD1 H N N 215 PHE HD2 H N N 216 PHE HE1 H N N 217 PHE HE2 H N N 218 PHE HZ H N N 219 PHE HXT H N N 220 PRO N N N N 221 PRO CA C N S 222 PRO C C N N 223 PRO O O N N 224 PRO CB C N N 225 PRO CG C N N 226 PRO CD C N N 227 PRO OXT O N N 228 PRO H H N N 229 PRO HA H N N 230 PRO HB2 H N N 231 PRO HB3 H N N 232 PRO HG2 H N N 233 PRO HG3 H N N 234 PRO HD2 H N N 235 PRO HD3 H N N 236 PRO HXT H N N 237 SER N N N N 238 SER CA C N S 239 SER C C N N 240 SER O O N N 241 SER CB C N N 242 SER OG O N N 243 SER OXT O N N 244 SER H H N N 245 SER H2 H N N 246 SER HA H N N 247 SER HB2 H N N 248 SER HB3 H N N 249 SER HG H N N 250 SER HXT H N N 251 THR N N N N 252 THR CA C N S 253 THR C C N N 254 THR O O N N 255 THR CB C N R 256 THR OG1 O N N 257 THR CG2 C N N 258 THR OXT O N N 259 THR H H N N 260 THR H2 H N N 261 THR HA H N N 262 THR HB H N N 263 THR HG1 H N N 264 THR HG21 H N N 265 THR HG22 H N N 266 THR HG23 H N N 267 THR HXT H N N 268 TYR N N N N 269 TYR CA C N S 270 TYR C C N N 271 TYR O O N N 272 TYR CB C N N 273 TYR CG C Y N 274 TYR CD1 C Y N 275 TYR CD2 C Y N 276 TYR CE1 C Y N 277 TYR CE2 C Y N 278 TYR CZ C Y N 279 TYR OH O N N 280 TYR OXT O N N 281 TYR H H N N 282 TYR H2 H N N 283 TYR HA H N N 284 TYR HB2 H N N 285 TYR HB3 H N N 286 TYR HD1 H N N 287 TYR HD2 H N N 288 TYR HE1 H N N 289 TYR HE2 H N N 290 TYR HH H N N 291 TYR HXT H N N 292 VAL N N N N 293 VAL CA C N S 294 VAL C C N N 295 VAL O O N N 296 VAL CB C N N 297 VAL CG1 C N N 298 VAL CG2 C N N 299 VAL OXT O N N 300 VAL H H N N 301 VAL H2 H N N 302 VAL HA H N N 303 VAL HB H N N 304 VAL HG11 H N N 305 VAL HG12 H N N 306 VAL HG13 H N N 307 VAL HG21 H N N 308 VAL HG22 H N N 309 VAL HG23 H N N 310 VAL HXT H N N 311 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLU N CA sing N N 73 GLU N H sing N N 74 GLU N H2 sing N N 75 GLU CA C sing N N 76 GLU CA CB sing N N 77 GLU CA HA sing N N 78 GLU C O doub N N 79 GLU C OXT sing N N 80 GLU CB CG sing N N 81 GLU CB HB2 sing N N 82 GLU CB HB3 sing N N 83 GLU CG CD sing N N 84 GLU CG HG2 sing N N 85 GLU CG HG3 sing N N 86 GLU CD OE1 doub N N 87 GLU CD OE2 sing N N 88 GLU OE2 HE2 sing N N 89 GLU OXT HXT sing N N 90 GLY N CA sing N N 91 GLY N H sing N N 92 GLY N H2 sing N N 93 GLY CA C sing N N 94 GLY CA HA2 sing N N 95 GLY CA HA3 sing N N 96 GLY C O doub N N 97 GLY C OXT sing N N 98 GLY OXT HXT sing N N 99 HOH O H1 sing N N 100 HOH O H2 sing N N 101 ILE N CA sing N N 102 ILE N H sing N N 103 ILE N H2 sing N N 104 ILE CA C sing N N 105 ILE CA CB sing N N 106 ILE CA HA sing N N 107 ILE C O doub N N 108 ILE C OXT sing N N 109 ILE CB CG1 sing N N 110 ILE CB CG2 sing N N 111 ILE CB HB sing N N 112 ILE CG1 CD1 sing N N 113 ILE CG1 HG12 sing N N 114 ILE CG1 HG13 sing N N 115 ILE CG2 HG21 sing N N 116 ILE CG2 HG22 sing N N 117 ILE CG2 HG23 sing N N 118 ILE CD1 HD11 sing N N 119 ILE CD1 HD12 sing N N 120 ILE CD1 HD13 sing N N 121 ILE OXT HXT sing N N 122 LEU N CA sing N N 123 LEU N H sing N N 124 LEU N H2 sing N N 125 LEU CA C sing N N 126 LEU CA CB sing N N 127 LEU CA HA sing N N 128 LEU C O doub N N 129 LEU C OXT sing N N 130 LEU CB CG sing N N 131 LEU CB HB2 sing N N 132 LEU CB HB3 sing N N 133 LEU CG CD1 sing N N 134 LEU CG CD2 sing N N 135 LEU CG HG sing N N 136 LEU CD1 HD11 sing N N 137 LEU CD1 HD12 sing N N 138 LEU CD1 HD13 sing N N 139 LEU CD2 HD21 sing N N 140 LEU CD2 HD22 sing N N 141 LEU CD2 HD23 sing N N 142 LEU OXT HXT sing N N 143 LYS N CA sing N N 144 LYS N H sing N N 145 LYS N H2 sing N N 146 LYS CA C sing N N 147 LYS CA CB sing N N 148 LYS CA HA sing N N 149 LYS C O doub N N 150 LYS C OXT sing N N 151 LYS CB CG sing N N 152 LYS CB HB2 sing N N 153 LYS CB HB3 sing N N 154 LYS CG CD sing N N 155 LYS CG HG2 sing N N 156 LYS CG HG3 sing N N 157 LYS CD CE sing N N 158 LYS CD HD2 sing N N 159 LYS CD HD3 sing N N 160 LYS CE NZ sing N N 161 LYS CE HE2 sing N N 162 LYS CE HE3 sing N N 163 LYS NZ HZ1 sing N N 164 LYS NZ HZ2 sing N N 165 LYS NZ HZ3 sing N N 166 LYS OXT HXT sing N N 167 MET N CA sing N N 168 MET N H sing N N 169 MET N H2 sing N N 170 MET CA C sing N N 171 MET CA CB sing N N 172 MET CA HA sing N N 173 MET C O doub N N 174 MET C OXT sing N N 175 MET CB CG sing N N 176 MET CB HB2 sing N N 177 MET CB HB3 sing N N 178 MET CG SD sing N N 179 MET CG HG2 sing N N 180 MET CG HG3 sing N N 181 MET SD CE sing N N 182 MET CE HE1 sing N N 183 MET CE HE2 sing N N 184 MET CE HE3 sing N N 185 MET OXT HXT sing N N 186 PHE N CA sing N N 187 PHE N H sing N N 188 PHE N H2 sing N N 189 PHE CA C sing N N 190 PHE CA CB sing N N 191 PHE CA HA sing N N 192 PHE C O doub N N 193 PHE C OXT sing N N 194 PHE CB CG sing N N 195 PHE CB HB2 sing N N 196 PHE CB HB3 sing N N 197 PHE CG CD1 doub Y N 198 PHE CG CD2 sing Y N 199 PHE CD1 CE1 sing Y N 200 PHE CD1 HD1 sing N N 201 PHE CD2 CE2 doub Y N 202 PHE CD2 HD2 sing N N 203 PHE CE1 CZ doub Y N 204 PHE CE1 HE1 sing N N 205 PHE CE2 CZ sing Y N 206 PHE CE2 HE2 sing N N 207 PHE CZ HZ sing N N 208 PHE OXT HXT sing N N 209 PRO N CA sing N N 210 PRO N CD sing N N 211 PRO N H sing N N 212 PRO CA C sing N N 213 PRO CA CB sing N N 214 PRO CA HA sing N N 215 PRO C O doub N N 216 PRO C OXT sing N N 217 PRO CB CG sing N N 218 PRO CB HB2 sing N N 219 PRO CB HB3 sing N N 220 PRO CG CD sing N N 221 PRO CG HG2 sing N N 222 PRO CG HG3 sing N N 223 PRO CD HD2 sing N N 224 PRO CD HD3 sing N N 225 PRO OXT HXT sing N N 226 SER N CA sing N N 227 SER N H sing N N 228 SER N H2 sing N N 229 SER CA C sing N N 230 SER CA CB sing N N 231 SER CA HA sing N N 232 SER C O doub N N 233 SER C OXT sing N N 234 SER CB OG sing N N 235 SER CB HB2 sing N N 236 SER CB HB3 sing N N 237 SER OG HG sing N N 238 SER OXT HXT sing N N 239 THR N CA sing N N 240 THR N H sing N N 241 THR N H2 sing N N 242 THR CA C sing N N 243 THR CA CB sing N N 244 THR CA HA sing N N 245 THR C O doub N N 246 THR C OXT sing N N 247 THR CB OG1 sing N N 248 THR CB CG2 sing N N 249 THR CB HB sing N N 250 THR OG1 HG1 sing N N 251 THR CG2 HG21 sing N N 252 THR CG2 HG22 sing N N 253 THR CG2 HG23 sing N N 254 THR OXT HXT sing N N 255 TYR N CA sing N N 256 TYR N H sing N N 257 TYR N H2 sing N N 258 TYR CA C sing N N 259 TYR CA CB sing N N 260 TYR CA HA sing N N 261 TYR C O doub N N 262 TYR C OXT sing N N 263 TYR CB CG sing N N 264 TYR CB HB2 sing N N 265 TYR CB HB3 sing N N 266 TYR CG CD1 doub Y N 267 TYR CG CD2 sing Y N 268 TYR CD1 CE1 sing Y N 269 TYR CD1 HD1 sing N N 270 TYR CD2 CE2 doub Y N 271 TYR CD2 HD2 sing N N 272 TYR CE1 CZ doub Y N 273 TYR CE1 HE1 sing N N 274 TYR CE2 CZ sing Y N 275 TYR CE2 HE2 sing N N 276 TYR CZ OH sing N N 277 TYR OH HH sing N N 278 TYR OXT HXT sing N N 279 VAL N CA sing N N 280 VAL N H sing N N 281 VAL N H2 sing N N 282 VAL CA C sing N N 283 VAL CA CB sing N N 284 VAL CA HA sing N N 285 VAL C O doub N N 286 VAL C OXT sing N N 287 VAL CB CG1 sing N N 288 VAL CB CG2 sing N N 289 VAL CB HB sing N N 290 VAL CG1 HG11 sing N N 291 VAL CG1 HG12 sing N N 292 VAL CG1 HG13 sing N N 293 VAL CG2 HG21 sing N N 294 VAL CG2 HG22 sing N N 295 VAL CG2 HG23 sing N N 296 VAL OXT HXT sing N N 297 # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'de novo designed model' # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 9DT9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.024116 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001724 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016540 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019324 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #