HEADER METAL BINDING PROTEIN 14-OCT-24 9DYQ TITLE CRYSTAL STRUCTURE OF HUMAN DYSFERLIN C2G DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYSFERLIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C2G DOMAIN (UNP RESIDUES 1808-2001); COMPND 5 SYNONYM: DYSTROPHY-ASSOCIATED FER-1-LIKE PROTEIN,FER-1-LIKE PROTEIN COMPND 6 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYSF, FER1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P202 KEYWDS DYSFERLIN, FERLIN, C2 DOMAIN, CALCIUM ION-DEPENDENT PHOSPHOLIPID KEYWDS 2 BINDING, LGMDR2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.DOMINGUEZ,R.B.SUTTON REVDAT 3 03-DEC-25 9DYQ 1 COMPND SOURCE REMARK SEQADV REVDAT 3 2 1 SEQRES REVDAT 2 29-OCT-25 9DYQ 1 SOURCE REVDAT 1 22-OCT-25 9DYQ 0 JRNL AUTH M.J.DOMINGUEZ,R.B.SUTTON JRNL TITL CRYSTAL STRUCTURE OF HUMAN DYSFERLIN C2G DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 34138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.0400 - 4.6900 0.97 2892 136 0.2215 0.2480 REMARK 3 2 4.6900 - 3.7200 0.99 2800 162 0.1786 0.1922 REMARK 3 3 3.7200 - 3.2500 0.98 2751 133 0.2132 0.2454 REMARK 3 4 3.2500 - 2.9500 0.99 2719 152 0.2531 0.3185 REMARK 3 5 2.9500 - 2.7400 0.96 2676 142 0.2755 0.3060 REMARK 3 6 2.7400 - 2.5800 0.98 2712 115 0.3484 0.4230 REMARK 3 7 2.5800 - 2.4500 0.98 2690 148 0.3110 0.2969 REMARK 3 8 2.4500 - 2.3500 0.99 2715 132 0.3187 0.3656 REMARK 3 9 2.3500 - 2.2500 0.95 2641 130 0.3431 0.3873 REMARK 3 10 2.2500 - 2.1800 0.96 2620 138 0.3814 0.4068 REMARK 3 11 2.1800 - 2.1100 0.97 2653 139 0.4041 0.3699 REMARK 3 12 2.1100 - 2.0500 0.96 2602 140 0.4249 0.4753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.395 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3425 REMARK 3 ANGLE : 1.170 4628 REMARK 3 CHIRALITY : 0.062 469 REMARK 3 PLANARITY : 0.009 596 REMARK 3 DIHEDRAL : 18.921 1272 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1807:1878 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.879 7.944 -15.892 REMARK 3 T TENSOR REMARK 3 T11: 0.3520 T22: 0.3925 REMARK 3 T33: 0.3674 T12: 0.0126 REMARK 3 T13: -0.0196 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.0004 L22: 1.6432 REMARK 3 L33: 0.5565 L12: 0.1193 REMARK 3 L13: 0.2142 L23: 0.3705 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: 0.1398 S13: 0.0008 REMARK 3 S21: -0.1513 S22: 0.0782 S23: 0.3561 REMARK 3 S31: 0.2099 S32: 0.0332 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 1879:1895 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.259 -6.410 -6.256 REMARK 3 T TENSOR REMARK 3 T11: 1.7913 T22: 1.3737 REMARK 3 T33: 1.5342 T12: -0.1498 REMARK 3 T13: -0.1706 T23: -0.1702 REMARK 3 L TENSOR REMARK 3 L11: 0.0186 L22: 0.0481 REMARK 3 L33: 0.0285 L12: -0.0696 REMARK 3 L13: 0.0276 L23: -0.0517 REMARK 3 S TENSOR REMARK 3 S11: 0.6709 S12: -0.6131 S13: 0.3843 REMARK 3 S21: 0.0810 S22: 0.2980 S23: 0.1371 REMARK 3 S31: -0.0961 S32: -0.6220 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 1896:1963 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.439 8.690 -4.634 REMARK 3 T TENSOR REMARK 3 T11: 0.4935 T22: 0.4360 REMARK 3 T33: 0.2503 T12: 0.0695 REMARK 3 T13: 0.0211 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 1.2193 L22: 2.8910 REMARK 3 L33: 1.6899 L12: -0.6090 REMARK 3 L13: 0.3409 L23: 0.2085 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: -0.3714 S13: 0.2308 REMARK 3 S21: 0.7680 S22: 0.1463 S23: 0.0653 REMARK 3 S31: 0.0918 S32: 0.4380 S33: 0.0948 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 1964:2000 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.854 5.421 -6.350 REMARK 3 T TENSOR REMARK 3 T11: 0.5507 T22: 0.4891 REMARK 3 T33: 0.4496 T12: 0.0661 REMARK 3 T13: 0.0082 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.3698 L22: 0.8937 REMARK 3 L33: 1.0966 L12: -0.6080 REMARK 3 L13: -1.1222 L23: 0.2663 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.1747 S13: -0.0180 REMARK 3 S21: 0.4052 S22: -0.0621 S23: 0.3181 REMARK 3 S31: 0.3583 S32: 0.1927 S33: -0.0019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 1807:1860 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.547 -27.181 -12.667 REMARK 3 T TENSOR REMARK 3 T11: 0.5795 T22: 0.4446 REMARK 3 T33: 0.3932 T12: 0.0217 REMARK 3 T13: 0.0316 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 1.5877 L22: 2.1391 REMARK 3 L33: 1.4707 L12: -1.3416 REMARK 3 L13: 0.4651 L23: 0.9340 REMARK 3 S TENSOR REMARK 3 S11: -0.1348 S12: -0.0248 S13: 0.1528 REMARK 3 S21: 0.5111 S22: 0.4354 S23: 0.3483 REMARK 3 S31: 0.2560 S32: -0.1541 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 1861:1887 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.799 -17.632 -19.933 REMARK 3 T TENSOR REMARK 3 T11: 0.4306 T22: 0.4151 REMARK 3 T33: 0.4165 T12: 0.0478 REMARK 3 T13: -0.0029 T23: 0.0887 REMARK 3 L TENSOR REMARK 3 L11: 0.9128 L22: 1.6098 REMARK 3 L33: 0.4984 L12: -0.6212 REMARK 3 L13: 0.4688 L23: 0.3730 REMARK 3 S TENSOR REMARK 3 S11: 0.3119 S12: -0.0670 S13: 0.5704 REMARK 3 S21: 0.3671 S22: -0.0627 S23: 0.0377 REMARK 3 S31: -0.5462 S32: -0.1268 S33: -1.4123 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 1888:1904 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.751 -15.500 -25.258 REMARK 3 T TENSOR REMARK 3 T11: 0.5066 T22: 1.0821 REMARK 3 T33: 0.8439 T12: 0.1145 REMARK 3 T13: 0.1190 T23: 0.0876 REMARK 3 L TENSOR REMARK 3 L11: -0.0065 L22: 0.0885 REMARK 3 L33: 0.1210 L12: 0.0291 REMARK 3 L13: 0.0486 L23: 0.1279 REMARK 3 S TENSOR REMARK 3 S11: 0.0985 S12: 0.8818 S13: -0.0152 REMARK 3 S21: 0.4303 S22: 0.2009 S23: 0.8116 REMARK 3 S31: 0.6754 S32: 0.8035 S33: 0.0120 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 1905:1977 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.706 -27.799 -24.940 REMARK 3 T TENSOR REMARK 3 T11: 0.3859 T22: 0.3939 REMARK 3 T33: 0.3811 T12: 0.0048 REMARK 3 T13: -0.0210 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.3394 L22: 2.6521 REMARK 3 L33: 2.3416 L12: 0.7603 REMARK 3 L13: -0.5425 L23: 1.2238 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.2488 S13: -0.1294 REMARK 3 S21: -0.2772 S22: 0.0182 S23: 0.1827 REMARK 3 S31: -0.0129 S32: 0.0424 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 1978:2000 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.499 -17.120 -22.424 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.3894 REMARK 3 T33: 0.3872 T12: -0.0102 REMARK 3 T13: 0.0288 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.4159 L22: 0.2240 REMARK 3 L33: 0.1261 L12: -0.2423 REMARK 3 L13: 0.7794 L23: -0.1220 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.3656 S13: 0.0235 REMARK 3 S21: -0.2524 S22: -0.2653 S23: -0.1976 REMARK 3 S31: -0.2366 S32: -0.0048 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1807 through 1832 REMARK 3 or resid 1834 through 1847 or resid 1849 REMARK 3 through 1876 or resid 1878 through 1927 REMARK 3 or resid 1929 through 1930 or resid 1932 REMARK 3 through 1955 or resid 1957 through 1962 REMARK 3 or resid 1964 through 2000)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1807 through 1832 REMARK 3 or resid 1834 through 1847 or resid 1849 REMARK 3 through 1876 or resid 1878 through 1927 REMARK 3 or resid 1929 through 1930 or resid 1932 REMARK 3 through 1955 or resid 1957 through 1962 REMARK 3 or resid 1964 through 2000)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000289060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : RH COATED FLAT BENT M0, TOROIDAL REMARK 200 FOCUSING POST-MONOCHROMATOR M REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35165 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 52.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.16060 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 3.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.14 M CALCIUM CHLORIDE, 10% 2 REMARK 280 -PROPANOL, 15% GLYCEROL, 0.07 M SODIUM ACETATE TRIHYDRATE, PH REMARK 280 5.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.97100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.97100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1802 REMARK 465 ASP A 1803 REMARK 465 ILE A 1804 REMARK 465 THR A 1805 REMARK 465 HIS A 1806 REMARK 465 PRO A 2001 REMARK 465 GLY B 1802 REMARK 465 ASP B 1803 REMARK 465 ILE B 1804 REMARK 465 THR B 1805 REMARK 465 HIS B 1806 REMARK 465 PRO B 2001 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A1888 -110.73 -64.85 REMARK 500 ASP A1890 -128.92 72.89 REMARK 500 LYS A1897 -106.64 36.43 REMARK 500 GLU A1899 -141.44 51.26 REMARK 500 SER A1900 105.61 84.23 REMARK 500 LYS A1963 -39.04 70.96 REMARK 500 LYS A1963 -32.03 65.96 REMARK 500 ARG B1859 44.28 70.89 REMARK 500 ALA B1891 -150.48 54.31 REMARK 500 PHE B1892 -65.65 85.02 REMARK 500 LEU B1895 -66.07 22.23 REMARK 500 LYS B1963 -39.72 70.32 REMARK 500 GLU B1977 19.47 51.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1826 OD2 REMARK 620 2 ASP A1827 OD1 70.6 REMARK 620 3 ASP A1912 OD2 86.0 82.9 REMARK 620 4 ASP A1914 OD1 154.2 99.6 68.9 REMARK 620 5 ASP A1914 OD2 143.5 144.9 103.2 53.4 REMARK 620 6 ASP A1920 OD2 70.7 141.2 94.9 115.8 73.4 REMARK 620 7 HOH B2203 O 90.9 116.5 158.1 114.5 67.5 63.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1827 OD2 REMARK 620 2 ASP A1837 OD2 97.9 REMARK 620 3 ASP A1912 OD1 88.1 84.1 REMARK 620 4 ASP A1912 OD2 77.8 137.0 53.2 REMARK 620 5 ASN A1913 O 174.3 76.5 90.0 105.4 REMARK 620 6 ASP A1914 OD1 91.1 146.6 128.5 76.3 94.3 REMARK 620 7 HOH A2202 O 91.6 74.7 158.6 147.2 88.2 72.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1914 OD2 REMARK 620 2 SER A1917 OG 77.4 REMARK 620 3 PHE A1918 O 90.6 91.0 REMARK 620 4 ASP A1920 OD1 110.6 168.6 81.0 REMARK 620 5 ASP A1920 OD2 62.8 139.3 97.2 50.6 REMARK 620 6 ASP B1949 OD1 58.4 85.8 32.2 91.5 80.7 REMARK 620 7 ASP B1949 OD2 59.5 85.0 31.1 92.1 82.1 1.5 REMARK 620 8 HOH B2203 O 84.4 101.1 165.5 88.0 68.4 140.0 141.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1949 OD1 REMARK 620 2 ASP A1949 OD2 49.0 REMARK 620 3 ASP B1914 OD2 80.8 36.1 REMARK 620 4 SER B1917 OG 82.9 37.3 2.8 REMARK 620 5 PHE B1918 O 83.9 39.3 3.2 3.0 REMARK 620 6 ASP B1920 OD1 83.1 39.5 3.7 4.8 2.1 REMARK 620 7 ASP B1920 OD2 80.9 37.4 2.6 4.9 3.4 2.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1826 OD2 REMARK 620 2 ASP B1827 OD1 76.6 REMARK 620 3 ASP B1912 OD2 86.5 81.2 REMARK 620 4 ASP B1914 OD1 150.6 89.1 65.8 REMARK 620 5 ASP B1914 OD2 150.0 132.5 103.1 53.2 REMARK 620 6 ASP B1920 OD2 78.1 154.5 100.0 114.8 72.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1827 OD2 REMARK 620 2 ASP B1837 OD2 91.3 REMARK 620 3 ASP B1912 OD1 83.7 83.0 REMARK 620 4 ASP B1912 OD2 89.1 133.7 51.0 REMARK 620 5 ASN B1913 O 166.7 76.1 90.4 96.5 REMARK 620 6 ASP B1914 OD1 102.4 151.8 122.6 71.8 90.9 REMARK 620 N 1 2 3 4 5 DBREF 9DYQ A 1808 2001 UNP O75923 DYSF_HUMAN 1808 2001 DBREF 9DYQ B 1808 2001 UNP O75923 DYSF_HUMAN 1808 2001 SEQADV 9DYQ GLY A 1802 UNP O75923 EXPRESSION TAG SEQADV 9DYQ ASP A 1803 UNP O75923 EXPRESSION TAG SEQADV 9DYQ ILE A 1804 UNP O75923 EXPRESSION TAG SEQADV 9DYQ THR A 1805 UNP O75923 EXPRESSION TAG SEQADV 9DYQ HIS A 1806 UNP O75923 EXPRESSION TAG SEQADV 9DYQ MET A 1807 UNP O75923 EXPRESSION TAG SEQADV 9DYQ GLY B 1802 UNP O75923 EXPRESSION TAG SEQADV 9DYQ ASP B 1803 UNP O75923 EXPRESSION TAG SEQADV 9DYQ ILE B 1804 UNP O75923 EXPRESSION TAG SEQADV 9DYQ THR B 1805 UNP O75923 EXPRESSION TAG SEQADV 9DYQ HIS B 1806 UNP O75923 EXPRESSION TAG SEQADV 9DYQ MET B 1807 UNP O75923 EXPRESSION TAG SEQRES 1 A 200 GLY ASP ILE THR HIS MET ALA ARG ARG PHE PHE LEU ARG SEQRES 2 A 200 CYS ILE ILE TRP ASN THR ARG ASP VAL ILE LEU ASP ASP SEQRES 3 A 200 LEU SER LEU THR GLY GLU LYS MET SER ASP ILE TYR VAL SEQRES 4 A 200 LYS GLY TRP MET ILE GLY PHE GLU GLU HIS LYS GLN LYS SEQRES 5 A 200 THR ASP VAL HIS TYR ARG SER LEU GLY GLY GLU GLY ASN SEQRES 6 A 200 PHE ASN TRP ARG PHE ILE PHE PRO PHE ASP TYR LEU PRO SEQRES 7 A 200 ALA GLU GLN VAL CYS THR ILE ALA LYS LYS ASP ALA PHE SEQRES 8 A 200 TRP ARG LEU ASP LYS THR GLU SER LYS ILE PRO ALA ARG SEQRES 9 A 200 VAL VAL PHE GLN ILE TRP ASP ASN ASP LYS PHE SER PHE SEQRES 10 A 200 ASP ASP PHE LEU GLY SER LEU GLN LEU ASP LEU ASN ARG SEQRES 11 A 200 MET PRO LYS PRO ALA LYS THR ALA LYS LYS CYS SER LEU SEQRES 12 A 200 ASP GLN LEU ASP ASP ALA PHE HIS PRO GLU TRP PHE VAL SEQRES 13 A 200 SER LEU PHE GLU GLN LYS THR VAL LYS GLY TRP TRP PRO SEQRES 14 A 200 CYS VAL ALA GLU GLU GLY GLU LYS LYS ILE LEU ALA GLY SEQRES 15 A 200 LYS LEU GLU MET THR LEU GLU ILE VAL ALA GLU SER GLU SEQRES 16 A 200 HIS GLU GLU ARG PRO SEQRES 1 B 200 GLY ASP ILE THR HIS MET ALA ARG ARG PHE PHE LEU ARG SEQRES 2 B 200 CYS ILE ILE TRP ASN THR ARG ASP VAL ILE LEU ASP ASP SEQRES 3 B 200 LEU SER LEU THR GLY GLU LYS MET SER ASP ILE TYR VAL SEQRES 4 B 200 LYS GLY TRP MET ILE GLY PHE GLU GLU HIS LYS GLN LYS SEQRES 5 B 200 THR ASP VAL HIS TYR ARG SER LEU GLY GLY GLU GLY ASN SEQRES 6 B 200 PHE ASN TRP ARG PHE ILE PHE PRO PHE ASP TYR LEU PRO SEQRES 7 B 200 ALA GLU GLN VAL CYS THR ILE ALA LYS LYS ASP ALA PHE SEQRES 8 B 200 TRP ARG LEU ASP LYS THR GLU SER LYS ILE PRO ALA ARG SEQRES 9 B 200 VAL VAL PHE GLN ILE TRP ASP ASN ASP LYS PHE SER PHE SEQRES 10 B 200 ASP ASP PHE LEU GLY SER LEU GLN LEU ASP LEU ASN ARG SEQRES 11 B 200 MET PRO LYS PRO ALA LYS THR ALA LYS LYS CYS SER LEU SEQRES 12 B 200 ASP GLN LEU ASP ASP ALA PHE HIS PRO GLU TRP PHE VAL SEQRES 13 B 200 SER LEU PHE GLU GLN LYS THR VAL LYS GLY TRP TRP PRO SEQRES 14 B 200 CYS VAL ALA GLU GLU GLY GLU LYS LYS ILE LEU ALA GLY SEQRES 15 B 200 LYS LEU GLU MET THR LEU GLU ILE VAL ALA GLU SER GLU SEQRES 16 B 200 HIS GLU GLU ARG PRO HET CA A2101 1 HET CA A2102 1 HET CA A2103 1 HET CL A2104 1 HET ACY A2105 7 HET GOL A2106 14 HET CA B2101 1 HET CA B2102 1 HET CA B2103 1 HET CL B2104 1 HET CL B2105 1 HET ACY B2106 7 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 6(CA 2+) FORMUL 6 CL 3(CL 1-) FORMUL 7 ACY 2(C2 H4 O2) FORMUL 8 GOL C3 H8 O3 FORMUL 15 HOH *42(H2 O) HELIX 1 AA1 PHE A 1847 LYS A 1851 5 5 HELIX 2 AA2 THR A 1938 CYS A 1942 5 5 HELIX 3 AA3 SER A 1943 ASP A 1948 5 6 HELIX 4 AA4 HIS A 1952 GLU A 1954 5 3 HELIX 5 AA5 SER A 1958 LYS A 1963 1 6 HELIX 6 AA6 PHE B 1847 LYS B 1851 5 5 HELIX 7 AA7 ARG B 1894 LYS B 1897 5 4 HELIX 8 AA8 THR B 1938 CYS B 1942 5 5 HELIX 9 AA9 SER B 1943 ASP B 1948 5 6 HELIX 10 AB1 HIS B 1952 GLU B 1954 5 3 HELIX 11 AB2 SER B 1958 LYS B 1963 1 6 SHEET 1 AA1 6 LYS A1901 ILE A1902 0 SHEET 2 AA1 6 VAL A1883 THR A1885 -1 N CYS A1884 O ILE A1902 SHEET 3 AA1 6 GLY A1865 LEU A1878 -1 N LEU A1878 O VAL A1883 SHEET 4 AA1 6 ARG A1809 ARG A1821 -1 N CYS A1815 O PHE A1871 SHEET 5 AA1 6 LYS A1978 ALA A1993 -1 O GLU A1990 N ARG A1814 SHEET 6 AA1 6 THR A1964 GLU A1975 -1 N CYS A1971 O GLY A1983 SHEET 1 AA2 4 LYS A1901 ILE A1902 0 SHEET 2 AA2 4 VAL A1883 THR A1885 -1 N CYS A1884 O ILE A1902 SHEET 3 AA2 4 GLY A1865 LEU A1878 -1 N LEU A1878 O VAL A1883 SHEET 4 AA2 4 SER B1995 HIS B1997 -1 O GLU B1996 N ARG A1870 SHEET 1 AA3 3 ASP A1827 LEU A1828 0 SHEET 2 AA3 3 LYS A1834 MET A1844 -1 O MET A1835 N ASP A1827 SHEET 3 AA3 3 HIS A1857 SER A1860 -1 O HIS A1857 N ILE A1838 SHEET 1 AA4 4 GLN A1852 LYS A1853 0 SHEET 2 AA4 4 LYS A1834 MET A1844 -1 N GLY A1842 O GLN A1852 SHEET 3 AA4 4 ARG A1905 ASP A1912 -1 O VAL A1907 N TRP A1843 SHEET 4 AA4 4 ASP A1920 ASP A1928 -1 O GLY A1923 N ILE A1910 SHEET 1 AA5 2 MET A1932 PRO A1933 0 SHEET 2 AA5 2 PHE A1956 VAL A1957 -1 O VAL A1957 N MET A1932 SHEET 1 AA6 4 SER A1995 HIS A1997 0 SHEET 2 AA6 4 GLY B1865 LEU B1878 -1 O ARG B1870 N GLU A1996 SHEET 3 AA6 4 VAL B1883 ALA B1887 -1 O VAL B1883 N LEU B1878 SHEET 4 AA6 4 GLU B1899 ILE B1902 -1 O ILE B1902 N CYS B1884 SHEET 1 AA7 5 SER A1995 HIS A1997 0 SHEET 2 AA7 5 GLY B1865 LEU B1878 -1 O ARG B1870 N GLU A1996 SHEET 3 AA7 5 ARG B1809 ARG B1821 -1 N CYS B1815 O PHE B1871 SHEET 4 AA7 5 LYS B1978 ALA B1993 -1 O GLU B1990 N ARG B1814 SHEET 5 AA7 5 THR B1964 GLU B1975 -1 N VAL B1965 O LEU B1989 SHEET 1 AA8 3 ASP B1827 LEU B1828 0 SHEET 2 AA8 3 LYS B1834 MET B1844 -1 O MET B1835 N ASP B1827 SHEET 3 AA8 3 HIS B1857 SER B1860 -1 O SER B1860 N SER B1836 SHEET 1 AA9 4 GLN B1852 LYS B1853 0 SHEET 2 AA9 4 LYS B1834 MET B1844 -1 N GLY B1842 O GLN B1852 SHEET 3 AA9 4 ARG B1905 ASP B1912 -1 O VAL B1907 N TRP B1843 SHEET 4 AA9 4 ASP B1920 ASP B1928 -1 O GLY B1923 N ILE B1910 SHEET 1 AB1 2 MET B1932 PRO B1933 0 SHEET 2 AB1 2 PHE B1956 VAL B1957 -1 O VAL B1957 N MET B1932 LINK OD2 ASP A1826 CA CA A2102 1555 1555 2.43 LINK OD1 ASP A1827 CA CA A2102 1555 1555 2.19 LINK OD2 ASP A1827 CA CA A2103 1555 1555 2.11 LINK OD2 ASP A1837 CA CA A2103 1555 1555 2.28 LINK OD2 ASP A1912 CA CA A2102 1555 1555 2.40 LINK OD1 ASP A1912 CA CA A2103 1555 1555 2.50 LINK OD2 ASP A1912 CA CA A2103 1555 1555 2.39 LINK O ASN A1913 CA CA A2103 1555 1555 2.22 LINK OD2 ASP A1914 CA CA A2101 1555 1555 2.25 LINK OD1 ASP A1914 CA CA A2102 1555 1555 2.57 LINK OD2 ASP A1914 CA CA A2102 1555 1555 2.29 LINK OD1 ASP A1914 CA CA A2103 1555 1555 2.16 LINK OG SER A1917 CA CA A2101 1555 1555 2.42 LINK O PHE A1918 CA CA A2101 1555 1555 2.41 LINK OD1 ASP A1920 CA CA A2101 1555 1555 2.35 LINK OD2 ASP A1920 CA CA A2101 1555 1555 2.75 LINK OD2 ASP A1920 CA CA A2102 1555 1555 2.11 LINK OD1 ASP A1949 CA CA B2103 1555 3455 2.84 LINK OD2 ASP A1949 CA CA B2103 1555 3455 2.41 LINK CA CA A2101 OD1 ASP B1949 3444 1555 2.85 LINK CA CA A2101 OD2 ASP B1949 3444 1555 2.60 LINK CA CA A2101 O HOH B2203 1555 3454 2.30 LINK CA CA A2102 O HOH B2203 1555 3454 3.08 LINK CA CA A2103 O HOH A2202 1555 1555 2.11 LINK OD2 ASP B1826 CA CA B2102 1555 1555 2.31 LINK OD2 ASP B1827 CA CA B2101 1555 1555 2.03 LINK OD1 ASP B1827 CA CA B2102 1555 1555 2.25 LINK OD2 ASP B1837 CA CA B2101 1555 1555 2.26 LINK OD1 ASP B1912 CA CA B2101 1555 1555 2.67 LINK OD2 ASP B1912 CA CA B2101 1555 1555 2.43 LINK OD2 ASP B1912 CA CA B2102 1555 1555 2.46 LINK O ASN B1913 CA CA B2101 1555 1555 2.34 LINK OD1 ASP B1914 CA CA B2101 1555 1555 2.23 LINK OD1 ASP B1914 CA CA B2102 1555 1555 2.58 LINK OD2 ASP B1914 CA CA B2102 1555 1555 2.35 LINK OD2 ASP B1914 CA CA B2103 1555 1555 2.20 LINK OG SER B1917 CA CA B2103 1555 1555 2.50 LINK O PHE B1918 CA CA B2103 1555 1555 2.39 LINK OD2 ASP B1920 CA CA B2102 1555 1555 2.05 LINK OD1 ASP B1920 CA CA B2103 1555 1555 2.25 LINK OD2 ASP B1920 CA CA B2103 1555 1555 2.61 CRYST1 83.942 109.760 59.100 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016920 0.00000 MTRIX1 1 0.994331 -0.091921 -0.053451 -0.04790 1 MTRIX2 1 -0.092164 -0.995742 -0.002101 -19.52722 1 MTRIX3 1 -0.053030 0.007016 -0.998568 -31.19545 1 CONECT 356 6551 CONECT 367 6551 CONECT 368 6552 CONECT 516 6552 CONECT 1810 6552 CONECT 1811 6551 6552 CONECT 1819 6552 CONECT 1836 6551 6552 CONECT 1837 6550 6551 CONECT 1889 6550 CONECT 1897 6550 CONECT 1932 6550 CONECT 1933 6550 6551 CONECT 3618 6576 CONECT 3629 6576 CONECT 3630 6575 CONECT 3793 6575 CONECT 5087 6575 CONECT 5088 6575 6576 CONECT 5096 6575 CONECT 5113 6575 6576 CONECT 5114 6576 6577 CONECT 5166 6577 CONECT 5174 6577 CONECT 5209 6577 CONECT 5210 6576 6577 CONECT 6550 1837 1889 1897 1932 CONECT 6550 1933 CONECT 6551 356 367 1811 1836 CONECT 6551 1837 1933 CONECT 6552 368 516 1810 1811 CONECT 6552 1819 1836 6588 CONECT 6554 6555 6556 6557 CONECT 6555 6554 CONECT 6556 6554 CONECT 6557 6554 6558 6559 6560 CONECT 6558 6557 CONECT 6559 6557 CONECT 6560 6557 CONECT 6561 6562 6563 6567 6568 CONECT 6562 6561 6569 CONECT 6563 6561 6564 6565 6570 CONECT 6564 6563 6571 CONECT 6565 6563 6566 6572 6573 CONECT 6566 6565 6574 CONECT 6567 6561 CONECT 6568 6561 CONECT 6569 6562 CONECT 6570 6563 CONECT 6571 6564 CONECT 6572 6565 CONECT 6573 6565 CONECT 6574 6566 CONECT 6575 3630 3793 5087 5088 CONECT 6575 5096 5113 CONECT 6576 3618 3629 5088 5113 CONECT 6576 5114 5210 CONECT 6577 5114 5166 5174 5209 CONECT 6577 5210 CONECT 6580 6581 6582 6583 CONECT 6581 6580 CONECT 6582 6580 CONECT 6583 6580 6584 6585 6586 CONECT 6584 6583 CONECT 6585 6583 CONECT 6586 6583 CONECT 6588 6552 MASTER 488 0 12 11 37 0 0 9 3289 2 67 32 END