data_9DZ0 # _entry.id 9DZ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9DZ0 pdb_00009dz0 10.2210/pdb9dz0/pdb WWPDB D_1000289120 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-03-26 ? 2 'Structure model' 1 1 2025-04-16 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9DZ0 _pdbx_database_status.recvd_initial_deposition_date 2024-10-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email jraskato@ucsc.edu _pdbx_contact_author.name_first Jevgenij _pdbx_contact_author.name_last Raskatov _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0082-9113 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawaya, M.R.' 1 0000-0003-0874-9043 'Raskatov, J.A.' 2 0000-0002-0082-9113 'Hazari, A.' 3 0009-0005-2071-1322 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 5907 _citation.page_last 5917 _citation.title ;Formation of rippled beta-sheets from mixed chirality linear and cyclic peptides-new structural motifs based on the pauling-corey rippled beta-sheet. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d4sc08079c _citation.pdbx_database_id_PubMed 40060095 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hazari, A.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Lee, H.' 3 ? primary 'Sajimon, M.' 4 ? primary 'Kim, H.' 5 ? primary 'Goddard Iii, W.A.' 6 ? primary 'Eisenberg, D.' 7 ? primary 'Raskatov, J.A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FKFGG(DPN)(DGL)(DPN)GG' 1093.211 1 ? ? ? 'DMS is a solvent molecule. It is not covalently linked to the peptide.' 2 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FKFGG(DPN)(DGL)(DPN)GG' _entity_poly.pdbx_seq_one_letter_code_can FKFGGFEFGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DIMETHYL SULFOXIDE' DMS 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 LYS n 1 3 PHE n 1 4 GLY n 1 5 GLY n 1 6 DPN n 1 7 DGL n 1 8 DPN n 1 9 GLY n 1 10 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 DPN 6 6 6 DPN DPN A . n A 1 7 DGL 7 7 7 DGL DGL A . n A 1 8 DPN 8 8 8 DPN DPN A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS 1 101 21 DMS DMS A . C 3 HOH 1 201 26 HOH HOH A . C 3 HOH 2 202 27 HOH HOH A . C 3 HOH 3 203 30 HOH HOH A . C 3 HOH 4 204 28 HOH HOH A . C 3 HOH 5 205 23 HOH HOH A . C 3 HOH 6 206 25 HOH HOH A . C 3 HOH 7 207 22 HOH HOH A . C 3 HOH 8 208 24 HOH HOH A . C 3 HOH 9 209 32 HOH HOH A . C 3 HOH 10 210 34 HOH HOH A . C 3 HOH 11 211 29 HOH HOH A . C 3 HOH 12 212 31 HOH HOH A . C 3 HOH 13 213 33 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 20230630 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20230630 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? 2013/2 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 103.770 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9DZ0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 14.130 _cell.length_a_esd ? _cell.length_b 29.320 _cell.length_b_esd ? _cell.length_c 9.520 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9DZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9DZ0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.75 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 29.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'dimethylsulfoxide and water' _exptl_crystal_grow.pdbx_pH_range 3-4 _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-10-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979330 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979330 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9DZ0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.1 _reflns.d_resolution_low 14.66 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2926 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.70 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.12 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.10 1.13 ? ? ? ? ? ? 156 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.379 ? ? 1 1 0.972 ? ? ? ? 0.35 ? ? ? ? ? ? ? ? ? 1.13 1.16 ? ? ? ? ? ? 208 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.347 ? ? 2 1 0.983 ? ? ? ? 0.323 ? ? ? ? ? ? ? ? ? 1.16 1.19 ? ? ? ? ? ? 206 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.334 ? ? 3 1 0.983 ? ? ? ? 0.314 ? ? ? ? ? ? ? ? ? 1.19 1.23 ? ? ? ? ? ? 183 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.347 ? ? 4 1 0.981 ? ? ? ? 0.328 ? ? ? ? ? ? ? ? ? 1.23 1.27 ? ? ? ? ? ? 193 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.339 ? ? 5 1 0.981 ? ? ? ? 0.321 ? ? ? ? ? ? ? ? ? 1.27 1.31 ? ? ? ? ? ? 190 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.337 ? ? 6 1 0.985 ? ? ? ? 0.318 ? ? ? ? ? ? ? ? ? 1.31 1.36 ? ? ? ? ? ? 195 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.247 ? ? 7 1 0.996 ? ? ? ? 0.234 ? ? ? ? ? ? ? ? ? 1.36 1.42 ? ? ? ? ? ? 162 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.216 ? ? 8 1 0.996 ? ? ? ? 0.204 ? ? ? ? ? ? ? ? ? 1.42 1.48 ? ? ? ? ? ? 168 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.226 ? ? 9 1 0.986 ? ? ? ? 0.215 ? ? ? ? ? ? ? ? ? 1.48 1.56 ? ? ? ? ? ? 175 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.2 ? ? 10 1 0.984 ? ? ? ? 0.19 ? ? ? ? ? ? ? ? ? 1.56 1.64 ? ? ? ? ? ? 157 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.158 ? ? 11 1 0.994 ? ? ? ? 0.149 ? ? ? ? ? ? ? ? ? 1.64 1.74 ? ? ? ? ? ? 146 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.14 ? ? 12 1 0.997 ? ? ? ? 0.132 ? ? ? ? ? ? ? ? ? 1.74 1.86 ? ? ? ? ? ? 139 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.133 ? ? 13 1 0.992 ? ? ? ? 0.125 ? ? ? ? ? ? ? ? ? 1.86 2.01 ? ? ? ? ? ? 130 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.111 ? ? 14 1 0.996 ? ? ? ? 0.105 ? ? ? ? ? ? ? ? ? 2.01 2.2 ? ? ? ? ? ? 120 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.114 ? ? 15 1 0.992 ? ? ? ? 0.107 ? ? ? ? ? ? ? ? ? 2.20 2.46 ? ? ? ? ? ? 112 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.103 ? ? 16 1 0.997 ? ? ? ? 0.098 ? ? ? ? ? ? ? ? ? 2.46 2.84 ? ? ? ? ? ? 95 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.097 ? ? 17 1 0.998 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? ? 2.84 3.48 ? ? ? ? ? ? 87 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.095 ? ? 18 1 0.994 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? ? 3.48 4.92 ? ? ? ? ? ? 70 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.076 ? ? 19 1 0.995 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? ? 4.92 14.66 ? ? ? ? ? ? 34 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.065 ? ? 20 1 0.999 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] 0.063 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.294 _refine.aniso_B[2][2] 0.956 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -1.038 _refine.B_iso_max ? _refine.B_iso_mean 11.145 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.985 _refine.correlation_coeff_Fo_to_Fc_free 0.981 _refine.details 'Hydrogens have been used if present in the input file' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9DZ0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.100 _refine.ls_d_res_low 14.660 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2926 _refine.ls_number_reflns_R_free 293 _refine.ls_number_reflns_R_work 2633 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.448 _refine.ls_percent_reflns_R_free 10.014 _refine.ls_R_factor_all 0.130 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1356 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1292 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.035 _refine.pdbx_overall_ESU_R_Free 0.030 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 78 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 95 _refine_hist.d_res_high 1.100 _refine_hist.d_res_low 14.660 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.012 85 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.180 0.018 73 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.998 1.694 110 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 6.519 1.694 167 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.795 5.000 10 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 9.653 20.000 2 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 6.740 15.000 6 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.058 0.200 6 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.024 0.020 105 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 31 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.172 0.200 14 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.241 0.200 48 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.227 0.200 43 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.278 0.200 33 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.125 0.200 5 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.061 0.200 2 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.243 0.200 16 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.182 0.200 5 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.501 0.576 40 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.495 0.574 38 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 0.688 0.875 50 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 0.683 0.875 50 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.730 1.115 45 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.743 1.178 46 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.347 1.523 60 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.352 1.592 61 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 2.873 9.425 90 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 1.518 9.189 89 ? r_lrange_other ? ? 'X-RAY DIFFRACTION' ? 4.604 3.000 158 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.100 1.229 868 . 75 675 86.4055 . 0.149 . . 0.149 . . . . . 0.134 . 5 . 0.960 0.956 0.150 'X-RAY DIFFRACTION' 1.229 1.417 770 . 74 666 96.1039 . 0.151 . . 0.152 . . . . . 0.143 . 5 . 0.963 0.963 0.145 'X-RAY DIFFRACTION' 1.417 1.732 650 . 63 571 97.5385 . 0.132 . . 0.129 . . . . . 0.129 . 5 . 0.974 0.962 0.167 'X-RAY DIFFRACTION' 1.732 2.433 515 . 51 457 98.6408 . 0.116 . . 0.117 . . . . . 0.134 . 5 . 0.985 0.987 0.112 'X-RAY DIFFRACTION' 2.433 14.660 295 . 30 264 99.6610 . 0.122 . . 0.121 . . . . . 0.153 . 5 . 0.986 0.979 0.129 # _struct.entry_id 9DZ0 _struct.title 'FKFGG(DPN)(DGL)(DPN)GG, a cyclic peptide with mixed chirality' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9DZ0 _struct_keywords.text 'peptide with mixed chirality, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9DZ0 _struct_ref.pdbx_db_accession 9DZ0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9DZ0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9DZ0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 1 2 A,B,C 1 3 A,B,C 1 4 A,B,C 1 5 A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -29.3200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 29.3200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -58.6400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 58.6400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 1 N ? ? ? 1_555 A GLY 10 C ? ? A PHE 1 A GLY 10 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A GLY 5 C ? ? ? 1_555 A DPN 6 N ? ? A GLY 5 A DPN 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? A DPN 6 C ? ? ? 1_555 A DGL 7 N ? ? A DPN 6 A DGL 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A DGL 7 C ? ? ? 1_555 A DPN 8 N ? ? A DGL 7 A DPN 8 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? A DPN 8 C ? ? ? 1_555 A GLY 9 N ? ? A DPN 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.346 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id PHE _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id GLY _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 10 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id PHE _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id GLY _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 10 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom N _pdbx_modification_feature.modified_residue_id_linking_atom C _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Non-standard linkage' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 2 ? PHE A 3 ? LYS A 2 PHE A 3 AA1 2 DPN A 6 ? DGL A 7 ? DPN A 6 DGL A 7 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id DPN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 6 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id DPN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 6 # _pdbx_entry_details.entry_id 9DZ0 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DGL N N N N 1 DGL CA C N R 2 DGL C C N N 3 DGL O O N N 4 DGL CB C N N 5 DGL CG C N N 6 DGL CD C N N 7 DGL OE1 O N N 8 DGL OE2 O N N 9 DGL OXT O N N 10 DGL H H N N 11 DGL H2 H N N 12 DGL HA H N N 13 DGL HB2 H N N 14 DGL HB3 H N N 15 DGL HG2 H N N 16 DGL HG3 H N N 17 DGL HE2 H N N 18 DGL HXT H N N 19 DMS S S N N 20 DMS O O N N 21 DMS C1 C N N 22 DMS C2 C N N 23 DMS H11 H N N 24 DMS H12 H N N 25 DMS H13 H N N 26 DMS H21 H N N 27 DMS H22 H N N 28 DMS H23 H N N 29 DPN N N N N 30 DPN CA C N R 31 DPN C C N N 32 DPN O O N N 33 DPN OXT O N N 34 DPN CB C N N 35 DPN CG C Y N 36 DPN CD1 C Y N 37 DPN CD2 C Y N 38 DPN CE1 C Y N 39 DPN CE2 C Y N 40 DPN CZ C Y N 41 DPN H H N N 42 DPN H2 H N N 43 DPN HA H N N 44 DPN HXT H N N 45 DPN HB2 H N N 46 DPN HB3 H N N 47 DPN HD1 H N N 48 DPN HD2 H N N 49 DPN HE1 H N N 50 DPN HE2 H N N 51 DPN HZ H N N 52 GLY N N N N 53 GLY CA C N N 54 GLY C C N N 55 GLY O O N N 56 GLY OXT O N N 57 GLY H H N N 58 GLY H2 H N N 59 GLY HA2 H N N 60 GLY HA3 H N N 61 GLY HXT H N N 62 HOH O O N N 63 HOH H1 H N N 64 HOH H2 H N N 65 LYS N N N N 66 LYS CA C N S 67 LYS C C N N 68 LYS O O N N 69 LYS CB C N N 70 LYS CG C N N 71 LYS CD C N N 72 LYS CE C N N 73 LYS NZ N N N 74 LYS OXT O N N 75 LYS H H N N 76 LYS H2 H N N 77 LYS HA H N N 78 LYS HB2 H N N 79 LYS HB3 H N N 80 LYS HG2 H N N 81 LYS HG3 H N N 82 LYS HD2 H N N 83 LYS HD3 H N N 84 LYS HE2 H N N 85 LYS HE3 H N N 86 LYS HZ1 H N N 87 LYS HZ2 H N N 88 LYS HZ3 H N N 89 LYS HXT H N N 90 PHE N N N N 91 PHE CA C N S 92 PHE C C N N 93 PHE O O N N 94 PHE CB C N N 95 PHE CG C Y N 96 PHE CD1 C Y N 97 PHE CD2 C Y N 98 PHE CE1 C Y N 99 PHE CE2 C Y N 100 PHE CZ C Y N 101 PHE OXT O N N 102 PHE H H N N 103 PHE H2 H N N 104 PHE HA H N N 105 PHE HB2 H N N 106 PHE HB3 H N N 107 PHE HD1 H N N 108 PHE HD2 H N N 109 PHE HE1 H N N 110 PHE HE2 H N N 111 PHE HZ H N N 112 PHE HXT H N N 113 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGL N CA sing N N 1 DGL N H sing N N 2 DGL N H2 sing N N 3 DGL CA C sing N N 4 DGL CA CB sing N N 5 DGL CA HA sing N N 6 DGL C O doub N N 7 DGL C OXT sing N N 8 DGL CB CG sing N N 9 DGL CB HB2 sing N N 10 DGL CB HB3 sing N N 11 DGL CG CD sing N N 12 DGL CG HG2 sing N N 13 DGL CG HG3 sing N N 14 DGL CD OE1 doub N N 15 DGL CD OE2 sing N N 16 DGL OE2 HE2 sing N N 17 DGL OXT HXT sing N N 18 DMS S O doub N N 19 DMS S C1 sing N N 20 DMS S C2 sing N N 21 DMS C1 H11 sing N N 22 DMS C1 H12 sing N N 23 DMS C1 H13 sing N N 24 DMS C2 H21 sing N N 25 DMS C2 H22 sing N N 26 DMS C2 H23 sing N N 27 DPN N CA sing N N 28 DPN N H sing N N 29 DPN N H2 sing N N 30 DPN CA C sing N N 31 DPN CA CB sing N N 32 DPN CA HA sing N N 33 DPN C O doub N N 34 DPN C OXT sing N N 35 DPN OXT HXT sing N N 36 DPN CB CG sing N N 37 DPN CB HB2 sing N N 38 DPN CB HB3 sing N N 39 DPN CG CD1 doub Y N 40 DPN CG CD2 sing Y N 41 DPN CD1 CE1 sing Y N 42 DPN CD1 HD1 sing N N 43 DPN CD2 CE2 doub Y N 44 DPN CD2 HD2 sing N N 45 DPN CE1 CZ doub Y N 46 DPN CE1 HE1 sing N N 47 DPN CE2 CZ sing Y N 48 DPN CE2 HE2 sing N N 49 DPN CZ HZ sing N N 50 GLY N CA sing N N 51 GLY N H sing N N 52 GLY N H2 sing N N 53 GLY CA C sing N N 54 GLY CA HA2 sing N N 55 GLY CA HA3 sing N N 56 GLY C O doub N N 57 GLY C OXT sing N N 58 GLY OXT HXT sing N N 59 HOH O H1 sing N N 60 HOH O H2 sing N N 61 LYS N CA sing N N 62 LYS N H sing N N 63 LYS N H2 sing N N 64 LYS CA C sing N N 65 LYS CA CB sing N N 66 LYS CA HA sing N N 67 LYS C O doub N N 68 LYS C OXT sing N N 69 LYS CB CG sing N N 70 LYS CB HB2 sing N N 71 LYS CB HB3 sing N N 72 LYS CG CD sing N N 73 LYS CG HG2 sing N N 74 LYS CG HG3 sing N N 75 LYS CD CE sing N N 76 LYS CD HD2 sing N N 77 LYS CD HD3 sing N N 78 LYS CE NZ sing N N 79 LYS CE HE2 sing N N 80 LYS CE HE3 sing N N 81 LYS NZ HZ1 sing N N 82 LYS NZ HZ2 sing N N 83 LYS NZ HZ3 sing N N 84 LYS OXT HXT sing N N 85 PHE N CA sing N N 86 PHE N H sing N N 87 PHE N H2 sing N N 88 PHE CA C sing N N 89 PHE CA CB sing N N 90 PHE CA HA sing N N 91 PHE C O doub N N 92 PHE C OXT sing N N 93 PHE CB CG sing N N 94 PHE CB HB2 sing N N 95 PHE CB HB3 sing N N 96 PHE CG CD1 doub Y N 97 PHE CG CD2 sing Y N 98 PHE CD1 CE1 sing Y N 99 PHE CD1 HD1 sing N N 100 PHE CD2 CE2 doub Y N 101 PHE CD2 HD2 sing N N 102 PHE CE1 CZ doub Y N 103 PHE CE1 HE1 sing N N 104 PHE CE2 CZ sing Y N 105 PHE CE2 HE2 sing N N 106 PHE CZ HZ sing N N 107 PHE OXT HXT sing N N 108 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' R01AG070895 1 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' R01AG048120 2 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' R01AG074954 3 # _atom_sites.entry_id 9DZ0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.070771 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.017344 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034106 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.108150 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 1.050 # loop_ # loop_ #