data_9E4R # _entry.id 9E4R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9E4R pdb_00009e4r 10.2210/pdb9e4r/pdb WWPDB D_1000289434 ? ? EMDB EMD-47518 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-03-19 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9E4R _pdbx_database_status.recvd_initial_deposition_date 2024-10-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Escherichia coli encapsulin-associated DyP peroxidase' _pdbx_database_related.db_id EMD-47518 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email tgiessen@umich.edu _pdbx_contact_author.name_first Tobias _pdbx_contact_author.name_last Giessen _pdbx_contact_author.name_mi W. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6328-2031 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Andreas, M.P.' 1 0000-0001-8871-3053 'Ubilla, N.C.' 2 0000-0003-0411-8674 'Giessen, T.W.' 3 0000-0001-6328-2031 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural and biochemical characterization of a widespread enterobacterial peroxidase encapsulin.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2024.11.27.625667 _citation.pdbx_database_id_PubMed 39651212 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ubilla-Rodriguez, N.C.' 1 0000-0003-0411-8674 primary 'Andreas, M.P.' 2 0000-0001-8871-3053 primary 'Giessen, T.W.' 3 0000-0001-6328-2031 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dyp-type peroxidase' 40644.516 1 ? ? ? ? 2 non-polymer nat 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHGGSENLYFQSGGSGCPFSQSVSQPVDERLTRAAIFLVVTINPGKAAEVAVRAHCSILSSLIRGVGFRISDGGL SCVMGVSEGGWERLFGDTKPEYLHVFREINGVHHAPSTPGDLLYHIRAARMDLCFELASRILSDLGNSVSVVDSVQGFRY FDDRDLLGFVDGTENPVAQAAVDATLIGDEDMVFAGGSYVIVQKYLHDLDKWNAIPVEQQEKIIGREKLSDIELRDADKP SYAHNVLTSIEEDGEDVDILRDNMPFGDPGKGEFGTYFIGYSRKPERIERMLENMFIGNPPGNYDRILDVSRAITGTLFF VPTTSFLDSIEPQSAPGQQGDDVINTLRSTAIKGDIMPGSLNIGSLKKEV ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHGGSENLYFQSGGSGCPFSQSVSQPVDERLTRAAIFLVVTINPGKAAEVAVRAHCSILSSLIRGVGFRISDGGL SCVMGVSEGGWERLFGDTKPEYLHVFREINGVHHAPSTPGDLLYHIRAARMDLCFELASRILSDLGNSVSVVDSVQGFRY FDDRDLLGFVDGTENPVAQAAVDATLIGDEDMVFAGGSYVIVQKYLHDLDKWNAIPVEQQEKIIGREKLSDIELRDADKP SYAHNVLTSIEEDGEDVDILRDNMPFGDPGKGEFGTYFIGYSRKPERIERMLENMFIGNPPGNYDRILDVSRAITGTLFF VPTTSFLDSIEPQSAPGQQGDDVINTLRSTAIKGDIMPGSLNIGSLKKEV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'PROTOPORPHYRIN IX CONTAINING FE' _pdbx_entity_nonpoly.comp_id HEM # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLY n 1 9 GLY n 1 10 SER n 1 11 GLU n 1 12 ASN n 1 13 LEU n 1 14 TYR n 1 15 PHE n 1 16 GLN n 1 17 SER n 1 18 GLY n 1 19 GLY n 1 20 SER n 1 21 GLY n 1 22 CYS n 1 23 PRO n 1 24 PHE n 1 25 SER n 1 26 GLN n 1 27 SER n 1 28 VAL n 1 29 SER n 1 30 GLN n 1 31 PRO n 1 32 VAL n 1 33 ASP n 1 34 GLU n 1 35 ARG n 1 36 LEU n 1 37 THR n 1 38 ARG n 1 39 ALA n 1 40 ALA n 1 41 ILE n 1 42 PHE n 1 43 LEU n 1 44 VAL n 1 45 VAL n 1 46 THR n 1 47 ILE n 1 48 ASN n 1 49 PRO n 1 50 GLY n 1 51 LYS n 1 52 ALA n 1 53 ALA n 1 54 GLU n 1 55 VAL n 1 56 ALA n 1 57 VAL n 1 58 ARG n 1 59 ALA n 1 60 HIS n 1 61 CYS n 1 62 SER n 1 63 ILE n 1 64 LEU n 1 65 SER n 1 66 SER n 1 67 LEU n 1 68 ILE n 1 69 ARG n 1 70 GLY n 1 71 VAL n 1 72 GLY n 1 73 PHE n 1 74 ARG n 1 75 ILE n 1 76 SER n 1 77 ASP n 1 78 GLY n 1 79 GLY n 1 80 LEU n 1 81 SER n 1 82 CYS n 1 83 VAL n 1 84 MET n 1 85 GLY n 1 86 VAL n 1 87 SER n 1 88 GLU n 1 89 GLY n 1 90 GLY n 1 91 TRP n 1 92 GLU n 1 93 ARG n 1 94 LEU n 1 95 PHE n 1 96 GLY n 1 97 ASP n 1 98 THR n 1 99 LYS n 1 100 PRO n 1 101 GLU n 1 102 TYR n 1 103 LEU n 1 104 HIS n 1 105 VAL n 1 106 PHE n 1 107 ARG n 1 108 GLU n 1 109 ILE n 1 110 ASN n 1 111 GLY n 1 112 VAL n 1 113 HIS n 1 114 HIS n 1 115 ALA n 1 116 PRO n 1 117 SER n 1 118 THR n 1 119 PRO n 1 120 GLY n 1 121 ASP n 1 122 LEU n 1 123 LEU n 1 124 TYR n 1 125 HIS n 1 126 ILE n 1 127 ARG n 1 128 ALA n 1 129 ALA n 1 130 ARG n 1 131 MET n 1 132 ASP n 1 133 LEU n 1 134 CYS n 1 135 PHE n 1 136 GLU n 1 137 LEU n 1 138 ALA n 1 139 SER n 1 140 ARG n 1 141 ILE n 1 142 LEU n 1 143 SER n 1 144 ASP n 1 145 LEU n 1 146 GLY n 1 147 ASN n 1 148 SER n 1 149 VAL n 1 150 SER n 1 151 VAL n 1 152 VAL n 1 153 ASP n 1 154 SER n 1 155 VAL n 1 156 GLN n 1 157 GLY n 1 158 PHE n 1 159 ARG n 1 160 TYR n 1 161 PHE n 1 162 ASP n 1 163 ASP n 1 164 ARG n 1 165 ASP n 1 166 LEU n 1 167 LEU n 1 168 GLY n 1 169 PHE n 1 170 VAL n 1 171 ASP n 1 172 GLY n 1 173 THR n 1 174 GLU n 1 175 ASN n 1 176 PRO n 1 177 VAL n 1 178 ALA n 1 179 GLN n 1 180 ALA n 1 181 ALA n 1 182 VAL n 1 183 ASP n 1 184 ALA n 1 185 THR n 1 186 LEU n 1 187 ILE n 1 188 GLY n 1 189 ASP n 1 190 GLU n 1 191 ASP n 1 192 MET n 1 193 VAL n 1 194 PHE n 1 195 ALA n 1 196 GLY n 1 197 GLY n 1 198 SER n 1 199 TYR n 1 200 VAL n 1 201 ILE n 1 202 VAL n 1 203 GLN n 1 204 LYS n 1 205 TYR n 1 206 LEU n 1 207 HIS n 1 208 ASP n 1 209 LEU n 1 210 ASP n 1 211 LYS n 1 212 TRP n 1 213 ASN n 1 214 ALA n 1 215 ILE n 1 216 PRO n 1 217 VAL n 1 218 GLU n 1 219 GLN n 1 220 GLN n 1 221 GLU n 1 222 LYS n 1 223 ILE n 1 224 ILE n 1 225 GLY n 1 226 ARG n 1 227 GLU n 1 228 LYS n 1 229 LEU n 1 230 SER n 1 231 ASP n 1 232 ILE n 1 233 GLU n 1 234 LEU n 1 235 ARG n 1 236 ASP n 1 237 ALA n 1 238 ASP n 1 239 LYS n 1 240 PRO n 1 241 SER n 1 242 TYR n 1 243 ALA n 1 244 HIS n 1 245 ASN n 1 246 VAL n 1 247 LEU n 1 248 THR n 1 249 SER n 1 250 ILE n 1 251 GLU n 1 252 GLU n 1 253 ASP n 1 254 GLY n 1 255 GLU n 1 256 ASP n 1 257 VAL n 1 258 ASP n 1 259 ILE n 1 260 LEU n 1 261 ARG n 1 262 ASP n 1 263 ASN n 1 264 MET n 1 265 PRO n 1 266 PHE n 1 267 GLY n 1 268 ASP n 1 269 PRO n 1 270 GLY n 1 271 LYS n 1 272 GLY n 1 273 GLU n 1 274 PHE n 1 275 GLY n 1 276 THR n 1 277 TYR n 1 278 PHE n 1 279 ILE n 1 280 GLY n 1 281 TYR n 1 282 SER n 1 283 ARG n 1 284 LYS n 1 285 PRO n 1 286 GLU n 1 287 ARG n 1 288 ILE n 1 289 GLU n 1 290 ARG n 1 291 MET n 1 292 LEU n 1 293 GLU n 1 294 ASN n 1 295 MET n 1 296 PHE n 1 297 ILE n 1 298 GLY n 1 299 ASN n 1 300 PRO n 1 301 PRO n 1 302 GLY n 1 303 ASN n 1 304 TYR n 1 305 ASP n 1 306 ARG n 1 307 ILE n 1 308 LEU n 1 309 ASP n 1 310 VAL n 1 311 SER n 1 312 ARG n 1 313 ALA n 1 314 ILE n 1 315 THR n 1 316 GLY n 1 317 THR n 1 318 LEU n 1 319 PHE n 1 320 PHE n 1 321 VAL n 1 322 PRO n 1 323 THR n 1 324 THR n 1 325 SER n 1 326 PHE n 1 327 LEU n 1 328 ASP n 1 329 SER n 1 330 ILE n 1 331 GLU n 1 332 PRO n 1 333 GLN n 1 334 SER n 1 335 ALA n 1 336 PRO n 1 337 GLY n 1 338 GLN n 1 339 GLN n 1 340 GLY n 1 341 ASP n 1 342 ASP n 1 343 VAL n 1 344 ILE n 1 345 ASN n 1 346 THR n 1 347 LEU n 1 348 ARG n 1 349 SER n 1 350 THR n 1 351 ALA n 1 352 ILE n 1 353 LYS n 1 354 GLY n 1 355 ASP n 1 356 ILE n 1 357 MET n 1 358 PRO n 1 359 GLY n 1 360 SER n 1 361 LEU n 1 362 ASN n 1 363 ILE n 1 364 GLY n 1 365 SER n 1 366 LEU n 1 367 LYS n 1 368 LYS n 1 369 GLU n 1 370 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 370 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'FPI65_30880, FWK02_13910' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain KTE40 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1169357 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -18 ? ? ? A . n A 1 2 HIS 2 -17 ? ? ? A . n A 1 3 HIS 3 -16 ? ? ? A . n A 1 4 HIS 4 -15 ? ? ? A . n A 1 5 HIS 5 -14 ? ? ? A . n A 1 6 HIS 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 GLY 8 -11 ? ? ? A . n A 1 9 GLY 9 -10 ? ? ? A . n A 1 10 SER 10 -9 ? ? ? A . n A 1 11 GLU 11 -8 ? ? ? A . n A 1 12 ASN 12 -7 ? ? ? A . n A 1 13 LEU 13 -6 ? ? ? A . n A 1 14 TYR 14 -5 ? ? ? A . n A 1 15 PHE 15 -4 ? ? ? A . n A 1 16 GLN 16 -3 ? ? ? A . n A 1 17 SER 17 -2 ? ? ? A . n A 1 18 GLY 18 -1 ? ? ? A . n A 1 19 GLY 19 0 ? ? ? A . n A 1 20 SER 20 1 ? ? ? A . n A 1 21 GLY 21 2 ? ? ? A . n A 1 22 CYS 22 3 3 CYS CYS A . n A 1 23 PRO 23 4 4 PRO PRO A . n A 1 24 PHE 24 5 5 PHE PHE A . n A 1 25 SER 25 6 6 SER SER A . n A 1 26 GLN 26 7 7 GLN GLN A . n A 1 27 SER 27 8 8 SER SER A . n A 1 28 VAL 28 9 9 VAL VAL A . n A 1 29 SER 29 10 10 SER SER A . n A 1 30 GLN 30 11 11 GLN GLN A . n A 1 31 PRO 31 12 12 PRO PRO A . n A 1 32 VAL 32 13 13 VAL VAL A . n A 1 33 ASP 33 14 14 ASP ASP A . n A 1 34 GLU 34 15 15 GLU GLU A . n A 1 35 ARG 35 16 16 ARG ARG A . n A 1 36 LEU 36 17 17 LEU LEU A . n A 1 37 THR 37 18 18 THR THR A . n A 1 38 ARG 38 19 19 ARG ARG A . n A 1 39 ALA 39 20 20 ALA ALA A . n A 1 40 ALA 40 21 21 ALA ALA A . n A 1 41 ILE 41 22 22 ILE ILE A . n A 1 42 PHE 42 23 23 PHE PHE A . n A 1 43 LEU 43 24 24 LEU LEU A . n A 1 44 VAL 44 25 25 VAL VAL A . n A 1 45 VAL 45 26 26 VAL VAL A . n A 1 46 THR 46 27 27 THR THR A . n A 1 47 ILE 47 28 28 ILE ILE A . n A 1 48 ASN 48 29 29 ASN ASN A . n A 1 49 PRO 49 30 30 PRO PRO A . n A 1 50 GLY 50 31 31 GLY GLY A . n A 1 51 LYS 51 32 32 LYS LYS A . n A 1 52 ALA 52 33 33 ALA ALA A . n A 1 53 ALA 53 34 34 ALA ALA A . n A 1 54 GLU 54 35 35 GLU GLU A . n A 1 55 VAL 55 36 36 VAL VAL A . n A 1 56 ALA 56 37 37 ALA ALA A . n A 1 57 VAL 57 38 38 VAL VAL A . n A 1 58 ARG 58 39 39 ARG ARG A . n A 1 59 ALA 59 40 40 ALA ALA A . n A 1 60 HIS 60 41 41 HIS HIS A . n A 1 61 CYS 61 42 42 CYS CYS A . n A 1 62 SER 62 43 43 SER SER A . n A 1 63 ILE 63 44 44 ILE ILE A . n A 1 64 LEU 64 45 45 LEU LEU A . n A 1 65 SER 65 46 46 SER SER A . n A 1 66 SER 66 47 47 SER SER A . n A 1 67 LEU 67 48 48 LEU LEU A . n A 1 68 ILE 68 49 49 ILE ILE A . n A 1 69 ARG 69 50 50 ARG ARG A . n A 1 70 GLY 70 51 51 GLY GLY A . n A 1 71 VAL 71 52 52 VAL VAL A . n A 1 72 GLY 72 53 53 GLY GLY A . n A 1 73 PHE 73 54 54 PHE PHE A . n A 1 74 ARG 74 55 55 ARG ARG A . n A 1 75 ILE 75 56 56 ILE ILE A . n A 1 76 SER 76 57 57 SER SER A . n A 1 77 ASP 77 58 58 ASP ASP A . n A 1 78 GLY 78 59 59 GLY GLY A . n A 1 79 GLY 79 60 60 GLY GLY A . n A 1 80 LEU 80 61 61 LEU LEU A . n A 1 81 SER 81 62 62 SER SER A . n A 1 82 CYS 82 63 63 CYS CYS A . n A 1 83 VAL 83 64 64 VAL VAL A . n A 1 84 MET 84 65 65 MET MET A . n A 1 85 GLY 85 66 66 GLY GLY A . n A 1 86 VAL 86 67 67 VAL VAL A . n A 1 87 SER 87 68 68 SER SER A . n A 1 88 GLU 88 69 69 GLU GLU A . n A 1 89 GLY 89 70 70 GLY GLY A . n A 1 90 GLY 90 71 71 GLY GLY A . n A 1 91 TRP 91 72 72 TRP TRP A . n A 1 92 GLU 92 73 73 GLU GLU A . n A 1 93 ARG 93 74 74 ARG ARG A . n A 1 94 LEU 94 75 75 LEU LEU A . n A 1 95 PHE 95 76 76 PHE PHE A . n A 1 96 GLY 96 77 77 GLY GLY A . n A 1 97 ASP 97 78 78 ASP ASP A . n A 1 98 THR 98 79 79 THR THR A . n A 1 99 LYS 99 80 80 LYS LYS A . n A 1 100 PRO 100 81 81 PRO PRO A . n A 1 101 GLU 101 82 82 GLU GLU A . n A 1 102 TYR 102 83 83 TYR TYR A . n A 1 103 LEU 103 84 84 LEU LEU A . n A 1 104 HIS 104 85 85 HIS HIS A . n A 1 105 VAL 105 86 86 VAL VAL A . n A 1 106 PHE 106 87 87 PHE PHE A . n A 1 107 ARG 107 88 88 ARG ARG A . n A 1 108 GLU 108 89 89 GLU GLU A . n A 1 109 ILE 109 90 90 ILE ILE A . n A 1 110 ASN 110 91 91 ASN ASN A . n A 1 111 GLY 111 92 92 GLY GLY A . n A 1 112 VAL 112 93 93 VAL VAL A . n A 1 113 HIS 113 94 94 HIS HIS A . n A 1 114 HIS 114 95 95 HIS HIS A . n A 1 115 ALA 115 96 96 ALA ALA A . n A 1 116 PRO 116 97 97 PRO PRO A . n A 1 117 SER 117 98 98 SER SER A . n A 1 118 THR 118 99 99 THR THR A . n A 1 119 PRO 119 100 100 PRO PRO A . n A 1 120 GLY 120 101 101 GLY GLY A . n A 1 121 ASP 121 102 102 ASP ASP A . n A 1 122 LEU 122 103 103 LEU LEU A . n A 1 123 LEU 123 104 104 LEU LEU A . n A 1 124 TYR 124 105 105 TYR TYR A . n A 1 125 HIS 125 106 106 HIS HIS A . n A 1 126 ILE 126 107 107 ILE ILE A . n A 1 127 ARG 127 108 108 ARG ARG A . n A 1 128 ALA 128 109 109 ALA ALA A . n A 1 129 ALA 129 110 110 ALA ALA A . n A 1 130 ARG 130 111 111 ARG ARG A . n A 1 131 MET 131 112 112 MET MET A . n A 1 132 ASP 132 113 113 ASP ASP A . n A 1 133 LEU 133 114 114 LEU LEU A . n A 1 134 CYS 134 115 115 CYS CYS A . n A 1 135 PHE 135 116 116 PHE PHE A . n A 1 136 GLU 136 117 117 GLU GLU A . n A 1 137 LEU 137 118 118 LEU LEU A . n A 1 138 ALA 138 119 119 ALA ALA A . n A 1 139 SER 139 120 120 SER SER A . n A 1 140 ARG 140 121 121 ARG ARG A . n A 1 141 ILE 141 122 122 ILE ILE A . n A 1 142 LEU 142 123 123 LEU LEU A . n A 1 143 SER 143 124 124 SER SER A . n A 1 144 ASP 144 125 125 ASP ASP A . n A 1 145 LEU 145 126 126 LEU LEU A . n A 1 146 GLY 146 127 127 GLY GLY A . n A 1 147 ASN 147 128 128 ASN ASN A . n A 1 148 SER 148 129 129 SER SER A . n A 1 149 VAL 149 130 130 VAL VAL A . n A 1 150 SER 150 131 131 SER SER A . n A 1 151 VAL 151 132 132 VAL VAL A . n A 1 152 VAL 152 133 133 VAL VAL A . n A 1 153 ASP 153 134 134 ASP ASP A . n A 1 154 SER 154 135 135 SER SER A . n A 1 155 VAL 155 136 136 VAL VAL A . n A 1 156 GLN 156 137 137 GLN GLN A . n A 1 157 GLY 157 138 138 GLY GLY A . n A 1 158 PHE 158 139 139 PHE PHE A . n A 1 159 ARG 159 140 140 ARG ARG A . n A 1 160 TYR 160 141 141 TYR TYR A . n A 1 161 PHE 161 142 142 PHE PHE A . n A 1 162 ASP 162 143 143 ASP ASP A . n A 1 163 ASP 163 144 144 ASP ASP A . n A 1 164 ARG 164 145 145 ARG ARG A . n A 1 165 ASP 165 146 146 ASP ASP A . n A 1 166 LEU 166 147 147 LEU LEU A . n A 1 167 LEU 167 148 148 LEU LEU A . n A 1 168 GLY 168 149 149 GLY GLY A . n A 1 169 PHE 169 150 150 PHE PHE A . n A 1 170 VAL 170 151 151 VAL VAL A . n A 1 171 ASP 171 152 152 ASP ASP A . n A 1 172 GLY 172 153 153 GLY GLY A . n A 1 173 THR 173 154 154 THR THR A . n A 1 174 GLU 174 155 155 GLU GLU A . n A 1 175 ASN 175 156 156 ASN ASN A . n A 1 176 PRO 176 157 157 PRO PRO A . n A 1 177 VAL 177 158 158 VAL VAL A . n A 1 178 ALA 178 159 159 ALA ALA A . n A 1 179 GLN 179 160 160 GLN GLN A . n A 1 180 ALA 180 161 161 ALA ALA A . n A 1 181 ALA 181 162 162 ALA ALA A . n A 1 182 VAL 182 163 163 VAL VAL A . n A 1 183 ASP 183 164 164 ASP ASP A . n A 1 184 ALA 184 165 165 ALA ALA A . n A 1 185 THR 185 166 166 THR THR A . n A 1 186 LEU 186 167 167 LEU LEU A . n A 1 187 ILE 187 168 168 ILE ILE A . n A 1 188 GLY 188 169 169 GLY GLY A . n A 1 189 ASP 189 170 170 ASP ASP A . n A 1 190 GLU 190 171 171 GLU GLU A . n A 1 191 ASP 191 172 172 ASP ASP A . n A 1 192 MET 192 173 173 MET MET A . n A 1 193 VAL 193 174 174 VAL VAL A . n A 1 194 PHE 194 175 175 PHE PHE A . n A 1 195 ALA 195 176 176 ALA ALA A . n A 1 196 GLY 196 177 177 GLY GLY A . n A 1 197 GLY 197 178 178 GLY GLY A . n A 1 198 SER 198 179 179 SER SER A . n A 1 199 TYR 199 180 180 TYR TYR A . n A 1 200 VAL 200 181 181 VAL VAL A . n A 1 201 ILE 201 182 182 ILE ILE A . n A 1 202 VAL 202 183 183 VAL VAL A . n A 1 203 GLN 203 184 184 GLN GLN A . n A 1 204 LYS 204 185 185 LYS LYS A . n A 1 205 TYR 205 186 186 TYR TYR A . n A 1 206 LEU 206 187 187 LEU LEU A . n A 1 207 HIS 207 188 188 HIS HIS A . n A 1 208 ASP 208 189 189 ASP ASP A . n A 1 209 LEU 209 190 190 LEU LEU A . n A 1 210 ASP 210 191 191 ASP ASP A . n A 1 211 LYS 211 192 192 LYS LYS A . n A 1 212 TRP 212 193 193 TRP TRP A . n A 1 213 ASN 213 194 194 ASN ASN A . n A 1 214 ALA 214 195 195 ALA ALA A . n A 1 215 ILE 215 196 196 ILE ILE A . n A 1 216 PRO 216 197 197 PRO PRO A . n A 1 217 VAL 217 198 198 VAL VAL A . n A 1 218 GLU 218 199 199 GLU GLU A . n A 1 219 GLN 219 200 200 GLN GLN A . n A 1 220 GLN 220 201 201 GLN GLN A . n A 1 221 GLU 221 202 202 GLU GLU A . n A 1 222 LYS 222 203 203 LYS LYS A . n A 1 223 ILE 223 204 204 ILE ILE A . n A 1 224 ILE 224 205 205 ILE ILE A . n A 1 225 GLY 225 206 206 GLY GLY A . n A 1 226 ARG 226 207 207 ARG ARG A . n A 1 227 GLU 227 208 208 GLU GLU A . n A 1 228 LYS 228 209 209 LYS LYS A . n A 1 229 LEU 229 210 210 LEU LEU A . n A 1 230 SER 230 211 211 SER SER A . n A 1 231 ASP 231 212 212 ASP ASP A . n A 1 232 ILE 232 213 213 ILE ILE A . n A 1 233 GLU 233 214 214 GLU GLU A . n A 1 234 LEU 234 215 215 LEU LEU A . n A 1 235 ARG 235 216 216 ARG ARG A . n A 1 236 ASP 236 217 217 ASP ASP A . n A 1 237 ALA 237 218 218 ALA ALA A . n A 1 238 ASP 238 219 219 ASP ASP A . n A 1 239 LYS 239 220 220 LYS LYS A . n A 1 240 PRO 240 221 221 PRO PRO A . n A 1 241 SER 241 222 222 SER SER A . n A 1 242 TYR 242 223 223 TYR TYR A . n A 1 243 ALA 243 224 224 ALA ALA A . n A 1 244 HIS 244 225 225 HIS HIS A . n A 1 245 ASN 245 226 226 ASN ASN A . n A 1 246 VAL 246 227 227 VAL VAL A . n A 1 247 LEU 247 228 228 LEU LEU A . n A 1 248 THR 248 229 229 THR THR A . n A 1 249 SER 249 230 230 SER SER A . n A 1 250 ILE 250 231 231 ILE ILE A . n A 1 251 GLU 251 232 232 GLU GLU A . n A 1 252 GLU 252 233 233 GLU GLU A . n A 1 253 ASP 253 234 234 ASP ASP A . n A 1 254 GLY 254 235 235 GLY GLY A . n A 1 255 GLU 255 236 236 GLU GLU A . n A 1 256 ASP 256 237 237 ASP ASP A . n A 1 257 VAL 257 238 238 VAL VAL A . n A 1 258 ASP 258 239 239 ASP ASP A . n A 1 259 ILE 259 240 240 ILE ILE A . n A 1 260 LEU 260 241 241 LEU LEU A . n A 1 261 ARG 261 242 242 ARG ARG A . n A 1 262 ASP 262 243 243 ASP ASP A . n A 1 263 ASN 263 244 244 ASN ASN A . n A 1 264 MET 264 245 245 MET MET A . n A 1 265 PRO 265 246 246 PRO PRO A . n A 1 266 PHE 266 247 247 PHE PHE A . n A 1 267 GLY 267 248 248 GLY GLY A . n A 1 268 ASP 268 249 249 ASP ASP A . n A 1 269 PRO 269 250 250 PRO PRO A . n A 1 270 GLY 270 251 251 GLY GLY A . n A 1 271 LYS 271 252 252 LYS LYS A . n A 1 272 GLY 272 253 253 GLY GLY A . n A 1 273 GLU 273 254 254 GLU GLU A . n A 1 274 PHE 274 255 255 PHE PHE A . n A 1 275 GLY 275 256 256 GLY GLY A . n A 1 276 THR 276 257 257 THR THR A . n A 1 277 TYR 277 258 258 TYR TYR A . n A 1 278 PHE 278 259 259 PHE PHE A . n A 1 279 ILE 279 260 260 ILE ILE A . n A 1 280 GLY 280 261 261 GLY GLY A . n A 1 281 TYR 281 262 262 TYR TYR A . n A 1 282 SER 282 263 263 SER SER A . n A 1 283 ARG 283 264 264 ARG ARG A . n A 1 284 LYS 284 265 265 LYS LYS A . n A 1 285 PRO 285 266 266 PRO PRO A . n A 1 286 GLU 286 267 267 GLU GLU A . n A 1 287 ARG 287 268 268 ARG ARG A . n A 1 288 ILE 288 269 269 ILE ILE A . n A 1 289 GLU 289 270 270 GLU GLU A . n A 1 290 ARG 290 271 271 ARG ARG A . n A 1 291 MET 291 272 272 MET MET A . n A 1 292 LEU 292 273 273 LEU LEU A . n A 1 293 GLU 293 274 274 GLU GLU A . n A 1 294 ASN 294 275 275 ASN ASN A . n A 1 295 MET 295 276 276 MET MET A . n A 1 296 PHE 296 277 277 PHE PHE A . n A 1 297 ILE 297 278 278 ILE ILE A . n A 1 298 GLY 298 279 279 GLY GLY A . n A 1 299 ASN 299 280 280 ASN ASN A . n A 1 300 PRO 300 281 281 PRO PRO A . n A 1 301 PRO 301 282 282 PRO PRO A . n A 1 302 GLY 302 283 283 GLY GLY A . n A 1 303 ASN 303 284 284 ASN ASN A . n A 1 304 TYR 304 285 285 TYR TYR A . n A 1 305 ASP 305 286 286 ASP ASP A . n A 1 306 ARG 306 287 287 ARG ARG A . n A 1 307 ILE 307 288 288 ILE ILE A . n A 1 308 LEU 308 289 289 LEU LEU A . n A 1 309 ASP 309 290 290 ASP ASP A . n A 1 310 VAL 310 291 291 VAL VAL A . n A 1 311 SER 311 292 292 SER SER A . n A 1 312 ARG 312 293 293 ARG ARG A . n A 1 313 ALA 313 294 294 ALA ALA A . n A 1 314 ILE 314 295 295 ILE ILE A . n A 1 315 THR 315 296 296 THR THR A . n A 1 316 GLY 316 297 297 GLY GLY A . n A 1 317 THR 317 298 298 THR THR A . n A 1 318 LEU 318 299 299 LEU LEU A . n A 1 319 PHE 319 300 300 PHE PHE A . n A 1 320 PHE 320 301 301 PHE PHE A . n A 1 321 VAL 321 302 302 VAL VAL A . n A 1 322 PRO 322 303 303 PRO PRO A . n A 1 323 THR 323 304 304 THR THR A . n A 1 324 THR 324 305 305 THR THR A . n A 1 325 SER 325 306 306 SER SER A . n A 1 326 PHE 326 307 307 PHE PHE A . n A 1 327 LEU 327 308 308 LEU LEU A . n A 1 328 ASP 328 309 309 ASP ASP A . n A 1 329 SER 329 310 310 SER SER A . n A 1 330 ILE 330 311 311 ILE ILE A . n A 1 331 GLU 331 312 312 GLU GLU A . n A 1 332 PRO 332 313 313 PRO PRO A . n A 1 333 GLN 333 314 ? ? ? A . n A 1 334 SER 334 315 ? ? ? A . n A 1 335 ALA 335 316 ? ? ? A . n A 1 336 PRO 336 317 ? ? ? A . n A 1 337 GLY 337 318 ? ? ? A . n A 1 338 GLN 338 319 ? ? ? A . n A 1 339 GLN 339 320 ? ? ? A . n A 1 340 GLY 340 321 ? ? ? A . n A 1 341 ASP 341 322 ? ? ? A . n A 1 342 ASP 342 323 ? ? ? A . n A 1 343 VAL 343 324 ? ? ? A . n A 1 344 ILE 344 325 ? ? ? A . n A 1 345 ASN 345 326 ? ? ? A . n A 1 346 THR 346 327 ? ? ? A . n A 1 347 LEU 347 328 ? ? ? A . n A 1 348 ARG 348 329 ? ? ? A . n A 1 349 SER 349 330 ? ? ? A . n A 1 350 THR 350 331 ? ? ? A . n A 1 351 ALA 351 332 ? ? ? A . n A 1 352 ILE 352 333 ? ? ? A . n A 1 353 LYS 353 334 ? ? ? A . n A 1 354 GLY 354 335 ? ? ? A . n A 1 355 ASP 355 336 ? ? ? A . n A 1 356 ILE 356 337 ? ? ? A . n A 1 357 MET 357 338 ? ? ? A . n A 1 358 PRO 358 339 ? ? ? A . n A 1 359 GLY 359 340 ? ? ? A . n A 1 360 SER 360 341 ? ? ? A . n A 1 361 LEU 361 342 ? ? ? A . n A 1 362 ASN 362 343 ? ? ? A . n A 1 363 ILE 363 344 ? ? ? A . n A 1 364 GLY 364 345 ? ? ? A . n A 1 365 SER 365 346 ? ? ? A . n A 1 366 LEU 366 347 ? ? ? A . n A 1 367 LYS 367 348 ? ? ? A . n A 1 368 LYS 368 349 ? ? ? A . n A 1 369 GLU 369 350 ? ? ? A . n A 1 370 VAL 370 351 ? ? ? A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id HEM _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id HEM _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEM _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HEM _pdbx_nonpoly_scheme.auth_mon_id HEM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9E4R _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9E4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9E4R _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9E4R _struct.title 'Escherichia coli encapsulin-associated DyP peroxidase' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9E4R _struct_keywords.text 'Dye-decolorizing peroxidase, peroxidase, DyP, encapsulin, OXIDOREDUCTASE' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A5C9AJY8_ECOLX _struct_ref.pdbx_db_accession A0A5C9AJY8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GCPFSQSVSQPVDERLTRAAIFLVVTINPGKAAEVAVRAHCSILSSLIRGVGFRISDGGLSCVMGVSEGGWERLFGDTKP EYLHVFREINGVHHAPSTPGDLLYHIRAARMDLCFELASRILSDLGNSVSVVDSVQGFRYFDDRDLLGFVDGTENPVAQA AVDATLIGDEDMVFAGGSYVIVQKYLHDLDKWNAIPVEQQEKIIGREKLSDIELRDADKPSYAHNVLTSIEEDGEDVDIL RDNMPFGDPGKGEFGTYFIGYSRKPERIERMLENMFIGNPPGNYDRILDVSRAITGTLFFVPTTSFLDSIEPQSAPGQQG DDVINTLRSTAIKGDIMPGSLNIGSLKKEV ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9E4R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 370 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A5C9AJY8 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 351 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 351 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9E4R MET A 1 ? UNP A0A5C9AJY8 ? ? 'initiating methionine' -18 1 1 9E4R HIS A 2 ? UNP A0A5C9AJY8 ? ? 'expression tag' -17 2 1 9E4R HIS A 3 ? UNP A0A5C9AJY8 ? ? 'expression tag' -16 3 1 9E4R HIS A 4 ? UNP A0A5C9AJY8 ? ? 'expression tag' -15 4 1 9E4R HIS A 5 ? UNP A0A5C9AJY8 ? ? 'expression tag' -14 5 1 9E4R HIS A 6 ? UNP A0A5C9AJY8 ? ? 'expression tag' -13 6 1 9E4R HIS A 7 ? UNP A0A5C9AJY8 ? ? 'expression tag' -12 7 1 9E4R GLY A 8 ? UNP A0A5C9AJY8 ? ? 'expression tag' -11 8 1 9E4R GLY A 9 ? UNP A0A5C9AJY8 ? ? 'expression tag' -10 9 1 9E4R SER A 10 ? UNP A0A5C9AJY8 ? ? 'expression tag' -9 10 1 9E4R GLU A 11 ? UNP A0A5C9AJY8 ? ? 'expression tag' -8 11 1 9E4R ASN A 12 ? UNP A0A5C9AJY8 ? ? 'expression tag' -7 12 1 9E4R LEU A 13 ? UNP A0A5C9AJY8 ? ? 'expression tag' -6 13 1 9E4R TYR A 14 ? UNP A0A5C9AJY8 ? ? 'expression tag' -5 14 1 9E4R PHE A 15 ? UNP A0A5C9AJY8 ? ? 'expression tag' -4 15 1 9E4R GLN A 16 ? UNP A0A5C9AJY8 ? ? 'expression tag' -3 16 1 9E4R SER A 17 ? UNP A0A5C9AJY8 ? ? 'expression tag' -2 17 1 9E4R GLY A 18 ? UNP A0A5C9AJY8 ? ? 'expression tag' -1 18 1 9E4R GLY A 19 ? UNP A0A5C9AJY8 ? ? 'expression tag' 0 19 1 9E4R SER A 20 ? UNP A0A5C9AJY8 ? ? 'expression tag' 1 20 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? hexameric 6 2 'point asymmetric unit' ? monomeric 1 3 'point asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-6)' A,B 2 1 A,B 3 P A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00009159 1.00000000 0.00002966 -116.49597 0.99999999 -0.00009159 0.00005910 -116.48014 0.00005910 0.00002966 -1.00000000 116.46996 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? -0.49999999 0.86602541 -0.00006297 73.85698 -0.86602539 -0.50000000 -0.00009567 275.61195 -0.00011434 0.00000669 0.99999999 0.01254 3 'point symmetry operation' ? ? -0.50000000 -0.86602541 -0.00011434 275.61544 0.86602540 -0.50000000 0.00000670 73.84395 -0.00006296 -0.00009567 0.99999999 0.01848 4 'point symmetry operation' ? ? -0.99999998 0.00018318 0.00000000 232.94651 0.00018318 0.99999998 0.00005932 -0.02824 0.00000000 0.00005933 -1.00000000 232.95369 5 'point symmetry operation' ? ? 0.49984135 -0.86611699 0.00006296 159.14002 -0.86611697 -0.49984135 -0.00003636 275.59723 0.00006295 -0.00003635 -1.00000000 232.95750 6 'point symmetry operation' ? ? 0.50015862 0.86593380 0.00011434 -42.65540 0.86593379 -0.50015863 0.00006600 73.86619 0.00011434 0.00006600 -0.99999999 232.93959 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 29 ? ARG A 35 ? SER A 10 ARG A 16 1 ? 7 HELX_P HELX_P2 AA2 GLY A 50 ? ARG A 74 ? GLY A 31 ARG A 55 1 ? 25 HELX_P HELX_P3 AA3 SER A 87 ? PHE A 95 ? SER A 68 PHE A 76 1 ? 9 HELX_P HELX_P4 AA4 ARG A 130 ? GLY A 146 ? ARG A 111 GLY A 127 1 ? 17 HELX_P HELX_P5 AA5 ALA A 178 ? LEU A 186 ? ALA A 159 LEU A 167 1 ? 9 HELX_P HELX_P6 AA6 ASP A 191 ? ALA A 195 ? ASP A 172 ALA A 176 5 ? 5 HELX_P HELX_P7 AA7 ASP A 208 ? ILE A 215 ? ASP A 189 ILE A 196 1 ? 8 HELX_P HELX_P8 AA8 PRO A 216 ? GLY A 225 ? PRO A 197 GLY A 206 1 ? 10 HELX_P HELX_P9 AA9 ALA A 243 ? THR A 248 ? ALA A 224 THR A 229 1 ? 6 HELX_P HELX_P10 AB1 LYS A 284 ? ILE A 297 ? LYS A 265 ILE A 278 1 ? 14 HELX_P HELX_P11 AB2 ASP A 305 ? ASP A 309 ? ASP A 286 ASP A 290 5 ? 5 HELX_P HELX_P12 AB3 THR A 323 ? SER A 329 ? THR A 304 SER A 310 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 244 _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id FE _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 225 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.130 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 244 ? A HIS 225 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 NA ? B HEM . ? A HEM 401 ? 1_555 79.2 ? 2 NE2 ? A HIS 244 ? A HIS 225 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 NB ? B HEM . ? A HEM 401 ? 1_555 84.1 ? 3 NA ? B HEM . ? A HEM 401 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 NB ? B HEM . ? A HEM 401 ? 1_555 89.8 ? 4 NE2 ? A HIS 244 ? A HIS 225 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 NC ? B HEM . ? A HEM 401 ? 1_555 103.2 ? 5 NA ? B HEM . ? A HEM 401 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 NC ? B HEM . ? A HEM 401 ? 1_555 177.6 ? 6 NB ? B HEM . ? A HEM 401 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 NC ? B HEM . ? A HEM 401 ? 1_555 90.1 ? 7 NE2 ? A HIS 244 ? A HIS 225 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 ND ? B HEM . ? A HEM 401 ? 1_555 95.6 ? 8 NA ? B HEM . ? A HEM 401 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 ND ? B HEM . ? A HEM 401 ? 1_555 90.3 ? 9 NB ? B HEM . ? A HEM 401 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 ND ? B HEM . ? A HEM 401 ? 1_555 179.6 ? 10 NC ? B HEM . ? A HEM 401 ? 1_555 FE ? B HEM . ? A HEM 401 ? 1_555 ND ? B HEM . ? A HEM 401 ? 1_555 89.9 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 299 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 280 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 300 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 281 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 81 ? VAL A 86 ? SER A 62 VAL A 67 AA1 2 LEU A 122 ? ALA A 128 ? LEU A 103 ALA A 109 AA1 3 ALA A 39 ? ILE A 47 ? ALA A 20 ILE A 28 AA1 4 VAL A 149 ? PHE A 158 ? VAL A 130 PHE A 139 AA2 1 ILE A 109 ? ASN A 110 ? ILE A 90 ASN A 91 AA2 2 HIS A 114 ? ALA A 115 ? HIS A 95 ALA A 96 AA3 1 LEU A 260 ? ARG A 261 ? LEU A 241 ARG A 242 AA3 2 GLU A 273 ? SER A 282 ? GLU A 254 SER A 263 AA3 3 MET A 264 ? ASP A 268 ? MET A 245 ASP A 249 AA4 1 LEU A 260 ? ARG A 261 ? LEU A 241 ARG A 242 AA4 2 GLU A 273 ? SER A 282 ? GLU A 254 SER A 263 AA4 3 SER A 198 ? HIS A 207 ? SER A 179 HIS A 188 AA4 4 SER A 311 ? VAL A 321 ? SER A 292 VAL A 302 AA5 1 GLU A 251 ? GLU A 252 ? GLU A 232 GLU A 233 AA5 2 GLU A 255 ? ASP A 256 ? GLU A 236 ASP A 237 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 81 ? N SER A 62 O ARG A 127 ? O ARG A 108 AA1 2 3 O LEU A 122 ? O LEU A 103 N VAL A 45 ? N VAL A 26 AA1 3 4 N THR A 46 ? N THR A 27 O SER A 150 ? O SER A 131 AA2 1 2 N ILE A 109 ? N ILE A 90 O ALA A 115 ? O ALA A 96 AA3 1 2 N LEU A 260 ? N LEU A 241 O TYR A 281 ? O TYR A 262 AA3 2 3 O TYR A 277 ? O TYR A 258 N MET A 264 ? N MET A 245 AA4 1 2 N LEU A 260 ? N LEU A 241 O TYR A 281 ? O TYR A 262 AA4 2 3 O SER A 282 ? O SER A 263 N TYR A 199 ? N TYR A 180 AA4 3 4 N VAL A 200 ? N VAL A 181 O PHE A 319 ? O PHE A 300 AA5 1 2 N GLU A 252 ? N GLU A 233 O GLU A 255 ? O GLU A 236 # _pdbx_entry_details.entry_id 9E4R _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 58 ? ? 38.90 32.05 2 1 PHE A 142 ? ? 56.39 -132.06 3 1 ALA A 159 ? ? 63.06 -119.69 # _pdbx_point_symmetry.entry_id 9E4R _pdbx_point_symmetry.Schoenflies_symbol D _pdbx_point_symmetry.circular_symmetry 3 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9E4R _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'cross-correlation coefficient' _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 105.9 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code A0A747AN60 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9E4R _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'Local refinement with D3 symmetry and force re-do GS-split applied.' _em_3d_reconstruction.resolution 3.31 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 10490 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'Sample was prepared in 20 mM Tris pH 7.5, 150 mM NaCl.' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Escherichia coli KTE40 encapsulin-associated DyP peroxidase' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # loop_ _em_image_scans.entry_id _em_image_scans.id _em_image_scans.number_digital_images _em_image_scans.details _em_image_scans.scanner_model _em_image_scans.sampling_size _em_image_scans.od_range _em_image_scans.quant_bit_size _em_image_scans.citation_id _em_image_scans.dimension_height _em_image_scans.dimension_width _em_image_scans.frames_per_image _em_image_scans.image_recording_id _em_image_scans.used_frames_per_image 9E4R 1 ? ? ? ? ? ? ? 3838 3710 30 1 ? 9E4R 2 ? ? ? ? ? ? ? 3838 3710 20 2 ? # loop_ _em_imaging.entry_id _em_imaging.id _em_imaging.astigmatism _em_imaging.electron_beam_tilt_params _em_imaging.residual_tilt _em_imaging.microscope_model _em_imaging.specimen_holder_type _em_imaging.specimen_holder_model _em_imaging.details _em_imaging.date _em_imaging.accelerating_voltage _em_imaging.illumination_mode _em_imaging.mode _em_imaging.nominal_cs _em_imaging.nominal_defocus_min _em_imaging.nominal_defocus_max _em_imaging.calibrated_defocus_min _em_imaging.calibrated_defocus_max _em_imaging.tilt_angle_min _em_imaging.tilt_angle_max _em_imaging.nominal_magnification _em_imaging.calibrated_magnification _em_imaging.electron_source _em_imaging.citation_id _em_imaging.temperature _em_imaging.detector_distance _em_imaging.recording_temperature_minimum _em_imaging.recording_temperature_maximum _em_imaging.alignment_procedure _em_imaging.c2_aperture_diameter _em_imaging.specimen_id _em_imaging.cryogen 9E4R 1 ? ? ? 'FEI TALOS ARCTICA' ? ? ? ? 200 'FLOOD BEAM' 'BRIGHT FIELD' 2.7 1000 1800 ? ? ? ? 45000 ? 'FIELD EMISSION GUN' ? ? ? ? ? ? ? 1 NITROGEN 9E4R 2 ? ? ? 'TFS GLACIOS' ? ? ? ? 200 'FLOOD BEAM' 'BRIGHT FIELD' 2.7 1000 1800 ? ? ? ? 45000 ? 'FIELD EMISSION GUN' ? ? ? ? ? ? ? 1 ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details 'Grids were glow discharged for 60 seconds at 5 mA in vacuum.' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9E4R _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Grids were frozen with the following parameters: blot force 20, blot time 4 seconds, humidty 100 percent, 22 degrees C.' # _em_experiment.entry_id 9E4R _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9E4R _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry D3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -18 ? A MET 1 2 1 Y 1 A HIS -17 ? A HIS 2 3 1 Y 1 A HIS -16 ? A HIS 3 4 1 Y 1 A HIS -15 ? A HIS 4 5 1 Y 1 A HIS -14 ? A HIS 5 6 1 Y 1 A HIS -13 ? A HIS 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A GLY -11 ? A GLY 8 9 1 Y 1 A GLY -10 ? A GLY 9 10 1 Y 1 A SER -9 ? A SER 10 11 1 Y 1 A GLU -8 ? A GLU 11 12 1 Y 1 A ASN -7 ? A ASN 12 13 1 Y 1 A LEU -6 ? A LEU 13 14 1 Y 1 A TYR -5 ? A TYR 14 15 1 Y 1 A PHE -4 ? A PHE 15 16 1 Y 1 A GLN -3 ? A GLN 16 17 1 Y 1 A SER -2 ? A SER 17 18 1 Y 1 A GLY -1 ? A GLY 18 19 1 Y 1 A GLY 0 ? A GLY 19 20 1 Y 1 A SER 1 ? A SER 20 21 1 Y 1 A GLY 2 ? A GLY 21 22 1 Y 1 A GLN 314 ? A GLN 333 23 1 Y 1 A SER 315 ? A SER 334 24 1 Y 1 A ALA 316 ? A ALA 335 25 1 Y 1 A PRO 317 ? A PRO 336 26 1 Y 1 A GLY 318 ? A GLY 337 27 1 Y 1 A GLN 319 ? A GLN 338 28 1 Y 1 A GLN 320 ? A GLN 339 29 1 Y 1 A GLY 321 ? A GLY 340 30 1 Y 1 A ASP 322 ? A ASP 341 31 1 Y 1 A ASP 323 ? A ASP 342 32 1 Y 1 A VAL 324 ? A VAL 343 33 1 Y 1 A ILE 325 ? A ILE 344 34 1 Y 1 A ASN 326 ? A ASN 345 35 1 Y 1 A THR 327 ? A THR 346 36 1 Y 1 A LEU 328 ? A LEU 347 37 1 Y 1 A ARG 329 ? A ARG 348 38 1 Y 1 A SER 330 ? A SER 349 39 1 Y 1 A THR 331 ? A THR 350 40 1 Y 1 A ALA 332 ? A ALA 351 41 1 Y 1 A ILE 333 ? A ILE 352 42 1 Y 1 A LYS 334 ? A LYS 353 43 1 Y 1 A GLY 335 ? A GLY 354 44 1 Y 1 A ASP 336 ? A ASP 355 45 1 Y 1 A ILE 337 ? A ILE 356 46 1 Y 1 A MET 338 ? A MET 357 47 1 Y 1 A PRO 339 ? A PRO 358 48 1 Y 1 A GLY 340 ? A GLY 359 49 1 Y 1 A SER 341 ? A SER 360 50 1 Y 1 A LEU 342 ? A LEU 361 51 1 Y 1 A ASN 343 ? A ASN 362 52 1 Y 1 A ILE 344 ? A ILE 363 53 1 Y 1 A GLY 345 ? A GLY 364 54 1 Y 1 A SER 346 ? A SER 365 55 1 Y 1 A LEU 347 ? A LEU 366 56 1 Y 1 A LYS 348 ? A LYS 367 57 1 Y 1 A LYS 349 ? A LYS 368 58 1 Y 1 A GLU 350 ? A GLU 369 59 1 Y 1 A VAL 351 ? A VAL 370 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HEM CHA C N N 137 HEM CHB C N N 138 HEM CHC C N N 139 HEM CHD C N N 140 HEM C1A C Y N 141 HEM C2A C Y N 142 HEM C3A C Y N 143 HEM C4A C Y N 144 HEM CMA C N N 145 HEM CAA C N N 146 HEM CBA C N N 147 HEM CGA C N N 148 HEM O1A O N N 149 HEM O2A O N N 150 HEM C1B C N N 151 HEM C2B C N N 152 HEM C3B C N N 153 HEM C4B C N N 154 HEM CMB C N N 155 HEM CAB C N N 156 HEM CBB C N N 157 HEM C1C C Y N 158 HEM C2C C Y N 159 HEM C3C C Y N 160 HEM C4C C Y N 161 HEM CMC C N N 162 HEM CAC C N N 163 HEM CBC C N N 164 HEM C1D C N N 165 HEM C2D C N N 166 HEM C3D C N N 167 HEM C4D C N N 168 HEM CMD C N N 169 HEM CAD C N N 170 HEM CBD C N N 171 HEM CGD C N N 172 HEM O1D O N N 173 HEM O2D O N N 174 HEM NA N Y N 175 HEM NB N N N 176 HEM NC N Y N 177 HEM ND N N N 178 HEM FE FE N N 179 HEM HHB H N N 180 HEM HHC H N N 181 HEM HHD H N N 182 HEM HMA H N N 183 HEM HMAA H N N 184 HEM HMAB H N N 185 HEM HAA H N N 186 HEM HAAA H N N 187 HEM HBA H N N 188 HEM HBAA H N N 189 HEM HMB H N N 190 HEM HMBA H N N 191 HEM HMBB H N N 192 HEM HAB H N N 193 HEM HBB H N N 194 HEM HBBA H N N 195 HEM HMC H N N 196 HEM HMCA H N N 197 HEM HMCB H N N 198 HEM HAC H N N 199 HEM HBC H N N 200 HEM HBCA H N N 201 HEM HMD H N N 202 HEM HMDA H N N 203 HEM HMDB H N N 204 HEM HAD H N N 205 HEM HADA H N N 206 HEM HBD H N N 207 HEM HBDA H N N 208 HEM H2A H N N 209 HEM H2D H N N 210 HEM HHA H N N 211 HIS N N N N 212 HIS CA C N S 213 HIS C C N N 214 HIS O O N N 215 HIS CB C N N 216 HIS CG C Y N 217 HIS ND1 N Y N 218 HIS CD2 C Y N 219 HIS CE1 C Y N 220 HIS NE2 N Y N 221 HIS OXT O N N 222 HIS H H N N 223 HIS H2 H N N 224 HIS HA H N N 225 HIS HB2 H N N 226 HIS HB3 H N N 227 HIS HD1 H N N 228 HIS HD2 H N N 229 HIS HE1 H N N 230 HIS HE2 H N N 231 HIS HXT H N N 232 ILE N N N N 233 ILE CA C N S 234 ILE C C N N 235 ILE O O N N 236 ILE CB C N S 237 ILE CG1 C N N 238 ILE CG2 C N N 239 ILE CD1 C N N 240 ILE OXT O N N 241 ILE H H N N 242 ILE H2 H N N 243 ILE HA H N N 244 ILE HB H N N 245 ILE HG12 H N N 246 ILE HG13 H N N 247 ILE HG21 H N N 248 ILE HG22 H N N 249 ILE HG23 H N N 250 ILE HD11 H N N 251 ILE HD12 H N N 252 ILE HD13 H N N 253 ILE HXT H N N 254 LEU N N N N 255 LEU CA C N S 256 LEU C C N N 257 LEU O O N N 258 LEU CB C N N 259 LEU CG C N N 260 LEU CD1 C N N 261 LEU CD2 C N N 262 LEU OXT O N N 263 LEU H H N N 264 LEU H2 H N N 265 LEU HA H N N 266 LEU HB2 H N N 267 LEU HB3 H N N 268 LEU HG H N N 269 LEU HD11 H N N 270 LEU HD12 H N N 271 LEU HD13 H N N 272 LEU HD21 H N N 273 LEU HD22 H N N 274 LEU HD23 H N N 275 LEU HXT H N N 276 LYS N N N N 277 LYS CA C N S 278 LYS C C N N 279 LYS O O N N 280 LYS CB C N N 281 LYS CG C N N 282 LYS CD C N N 283 LYS CE C N N 284 LYS NZ N N N 285 LYS OXT O N N 286 LYS H H N N 287 LYS H2 H N N 288 LYS HA H N N 289 LYS HB2 H N N 290 LYS HB3 H N N 291 LYS HG2 H N N 292 LYS HG3 H N N 293 LYS HD2 H N N 294 LYS HD3 H N N 295 LYS HE2 H N N 296 LYS HE3 H N N 297 LYS HZ1 H N N 298 LYS HZ2 H N N 299 LYS HZ3 H N N 300 LYS HXT H N N 301 MET N N N N 302 MET CA C N S 303 MET C C N N 304 MET O O N N 305 MET CB C N N 306 MET CG C N N 307 MET SD S N N 308 MET CE C N N 309 MET OXT O N N 310 MET H H N N 311 MET H2 H N N 312 MET HA H N N 313 MET HB2 H N N 314 MET HB3 H N N 315 MET HG2 H N N 316 MET HG3 H N N 317 MET HE1 H N N 318 MET HE2 H N N 319 MET HE3 H N N 320 MET HXT H N N 321 PHE N N N N 322 PHE CA C N S 323 PHE C C N N 324 PHE O O N N 325 PHE CB C N N 326 PHE CG C Y N 327 PHE CD1 C Y N 328 PHE CD2 C Y N 329 PHE CE1 C Y N 330 PHE CE2 C Y N 331 PHE CZ C Y N 332 PHE OXT O N N 333 PHE H H N N 334 PHE H2 H N N 335 PHE HA H N N 336 PHE HB2 H N N 337 PHE HB3 H N N 338 PHE HD1 H N N 339 PHE HD2 H N N 340 PHE HE1 H N N 341 PHE HE2 H N N 342 PHE HZ H N N 343 PHE HXT H N N 344 PRO N N N N 345 PRO CA C N S 346 PRO C C N N 347 PRO O O N N 348 PRO CB C N N 349 PRO CG C N N 350 PRO CD C N N 351 PRO OXT O N N 352 PRO H H N N 353 PRO HA H N N 354 PRO HB2 H N N 355 PRO HB3 H N N 356 PRO HG2 H N N 357 PRO HG3 H N N 358 PRO HD2 H N N 359 PRO HD3 H N N 360 PRO HXT H N N 361 SER N N N N 362 SER CA C N S 363 SER C C N N 364 SER O O N N 365 SER CB C N N 366 SER OG O N N 367 SER OXT O N N 368 SER H H N N 369 SER H2 H N N 370 SER HA H N N 371 SER HB2 H N N 372 SER HB3 H N N 373 SER HG H N N 374 SER HXT H N N 375 THR N N N N 376 THR CA C N S 377 THR C C N N 378 THR O O N N 379 THR CB C N R 380 THR OG1 O N N 381 THR CG2 C N N 382 THR OXT O N N 383 THR H H N N 384 THR H2 H N N 385 THR HA H N N 386 THR HB H N N 387 THR HG1 H N N 388 THR HG21 H N N 389 THR HG22 H N N 390 THR HG23 H N N 391 THR HXT H N N 392 TRP N N N N 393 TRP CA C N S 394 TRP C C N N 395 TRP O O N N 396 TRP CB C N N 397 TRP CG C Y N 398 TRP CD1 C Y N 399 TRP CD2 C Y N 400 TRP NE1 N Y N 401 TRP CE2 C Y N 402 TRP CE3 C Y N 403 TRP CZ2 C Y N 404 TRP CZ3 C Y N 405 TRP CH2 C Y N 406 TRP OXT O N N 407 TRP H H N N 408 TRP H2 H N N 409 TRP HA H N N 410 TRP HB2 H N N 411 TRP HB3 H N N 412 TRP HD1 H N N 413 TRP HE1 H N N 414 TRP HE3 H N N 415 TRP HZ2 H N N 416 TRP HZ3 H N N 417 TRP HH2 H N N 418 TRP HXT H N N 419 TYR N N N N 420 TYR CA C N S 421 TYR C C N N 422 TYR O O N N 423 TYR CB C N N 424 TYR CG C Y N 425 TYR CD1 C Y N 426 TYR CD2 C Y N 427 TYR CE1 C Y N 428 TYR CE2 C Y N 429 TYR CZ C Y N 430 TYR OH O N N 431 TYR OXT O N N 432 TYR H H N N 433 TYR H2 H N N 434 TYR HA H N N 435 TYR HB2 H N N 436 TYR HB3 H N N 437 TYR HD1 H N N 438 TYR HD2 H N N 439 TYR HE1 H N N 440 TYR HE2 H N N 441 TYR HH H N N 442 TYR HXT H N N 443 VAL N N N N 444 VAL CA C N S 445 VAL C C N N 446 VAL O O N N 447 VAL CB C N N 448 VAL CG1 C N N 449 VAL CG2 C N N 450 VAL OXT O N N 451 VAL H H N N 452 VAL H2 H N N 453 VAL HA H N N 454 VAL HB H N N 455 VAL HG11 H N N 456 VAL HG12 H N N 457 VAL HG13 H N N 458 VAL HG21 H N N 459 VAL HG22 H N N 460 VAL HG23 H N N 461 VAL HXT H N N 462 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HEM CHA C1A sing N N 129 HEM CHA C4D doub N N 130 HEM CHA HHA sing N N 131 HEM CHB C4A sing N N 132 HEM CHB C1B doub N N 133 HEM CHB HHB sing N N 134 HEM CHC C4B sing N N 135 HEM CHC C1C doub N N 136 HEM CHC HHC sing N N 137 HEM CHD C4C doub N N 138 HEM CHD C1D sing N N 139 HEM CHD HHD sing N N 140 HEM C1A C2A doub Y N 141 HEM C1A NA sing Y N 142 HEM C2A C3A sing Y N 143 HEM C2A CAA sing N N 144 HEM C3A C4A doub Y N 145 HEM C3A CMA sing N N 146 HEM C4A NA sing Y N 147 HEM CMA HMA sing N N 148 HEM CMA HMAA sing N N 149 HEM CMA HMAB sing N N 150 HEM CAA CBA sing N N 151 HEM CAA HAA sing N N 152 HEM CAA HAAA sing N N 153 HEM CBA CGA sing N N 154 HEM CBA HBA sing N N 155 HEM CBA HBAA sing N N 156 HEM CGA O1A doub N N 157 HEM CGA O2A sing N N 158 HEM C1B C2B sing N N 159 HEM C1B NB sing N N 160 HEM C2B C3B doub N N 161 HEM C2B CMB sing N N 162 HEM C3B C4B sing N N 163 HEM C3B CAB sing N N 164 HEM C4B NB doub N N 165 HEM CMB HMB sing N N 166 HEM CMB HMBA sing N N 167 HEM CMB HMBB sing N N 168 HEM CAB CBB doub N N 169 HEM CAB HAB sing N N 170 HEM CBB HBB sing N N 171 HEM CBB HBBA sing N N 172 HEM C1C C2C sing Y N 173 HEM C1C NC sing Y N 174 HEM C2C C3C doub Y N 175 HEM C2C CMC sing N N 176 HEM C3C C4C sing Y N 177 HEM C3C CAC sing N N 178 HEM C4C NC sing Y N 179 HEM CMC HMC sing N N 180 HEM CMC HMCA sing N N 181 HEM CMC HMCB sing N N 182 HEM CAC CBC doub N N 183 HEM CAC HAC sing N N 184 HEM CBC HBC sing N N 185 HEM CBC HBCA sing N N 186 HEM C1D C2D sing N N 187 HEM C1D ND doub N N 188 HEM C2D C3D doub N N 189 HEM C2D CMD sing N N 190 HEM C3D C4D sing N N 191 HEM C3D CAD sing N N 192 HEM C4D ND sing N N 193 HEM CMD HMD sing N N 194 HEM CMD HMDA sing N N 195 HEM CMD HMDB sing N N 196 HEM CAD CBD sing N N 197 HEM CAD HAD sing N N 198 HEM CAD HADA sing N N 199 HEM CBD CGD sing N N 200 HEM CBD HBD sing N N 201 HEM CBD HBDA sing N N 202 HEM CGD O1D doub N N 203 HEM CGD O2D sing N N 204 HEM O2A H2A sing N N 205 HEM O2D H2D sing N N 206 HEM FE NA sing N N 207 HEM FE NB sing N N 208 HEM FE NC sing N N 209 HEM FE ND sing N N 210 HIS N CA sing N N 211 HIS N H sing N N 212 HIS N H2 sing N N 213 HIS CA C sing N N 214 HIS CA CB sing N N 215 HIS CA HA sing N N 216 HIS C O doub N N 217 HIS C OXT sing N N 218 HIS CB CG sing N N 219 HIS CB HB2 sing N N 220 HIS CB HB3 sing N N 221 HIS CG ND1 sing Y N 222 HIS CG CD2 doub Y N 223 HIS ND1 CE1 doub Y N 224 HIS ND1 HD1 sing N N 225 HIS CD2 NE2 sing Y N 226 HIS CD2 HD2 sing N N 227 HIS CE1 NE2 sing Y N 228 HIS CE1 HE1 sing N N 229 HIS NE2 HE2 sing N N 230 HIS OXT HXT sing N N 231 ILE N CA sing N N 232 ILE N H sing N N 233 ILE N H2 sing N N 234 ILE CA C sing N N 235 ILE CA CB sing N N 236 ILE CA HA sing N N 237 ILE C O doub N N 238 ILE C OXT sing N N 239 ILE CB CG1 sing N N 240 ILE CB CG2 sing N N 241 ILE CB HB sing N N 242 ILE CG1 CD1 sing N N 243 ILE CG1 HG12 sing N N 244 ILE CG1 HG13 sing N N 245 ILE CG2 HG21 sing N N 246 ILE CG2 HG22 sing N N 247 ILE CG2 HG23 sing N N 248 ILE CD1 HD11 sing N N 249 ILE CD1 HD12 sing N N 250 ILE CD1 HD13 sing N N 251 ILE OXT HXT sing N N 252 LEU N CA sing N N 253 LEU N H sing N N 254 LEU N H2 sing N N 255 LEU CA C sing N N 256 LEU CA CB sing N N 257 LEU CA HA sing N N 258 LEU C O doub N N 259 LEU C OXT sing N N 260 LEU CB CG sing N N 261 LEU CB HB2 sing N N 262 LEU CB HB3 sing N N 263 LEU CG CD1 sing N N 264 LEU CG CD2 sing N N 265 LEU CG HG sing N N 266 LEU CD1 HD11 sing N N 267 LEU CD1 HD12 sing N N 268 LEU CD1 HD13 sing N N 269 LEU CD2 HD21 sing N N 270 LEU CD2 HD22 sing N N 271 LEU CD2 HD23 sing N N 272 LEU OXT HXT sing N N 273 LYS N CA sing N N 274 LYS N H sing N N 275 LYS N H2 sing N N 276 LYS CA C sing N N 277 LYS CA CB sing N N 278 LYS CA HA sing N N 279 LYS C O doub N N 280 LYS C OXT sing N N 281 LYS CB CG sing N N 282 LYS CB HB2 sing N N 283 LYS CB HB3 sing N N 284 LYS CG CD sing N N 285 LYS CG HG2 sing N N 286 LYS CG HG3 sing N N 287 LYS CD CE sing N N 288 LYS CD HD2 sing N N 289 LYS CD HD3 sing N N 290 LYS CE NZ sing N N 291 LYS CE HE2 sing N N 292 LYS CE HE3 sing N N 293 LYS NZ HZ1 sing N N 294 LYS NZ HZ2 sing N N 295 LYS NZ HZ3 sing N N 296 LYS OXT HXT sing N N 297 MET N CA sing N N 298 MET N H sing N N 299 MET N H2 sing N N 300 MET CA C sing N N 301 MET CA CB sing N N 302 MET CA HA sing N N 303 MET C O doub N N 304 MET C OXT sing N N 305 MET CB CG sing N N 306 MET CB HB2 sing N N 307 MET CB HB3 sing N N 308 MET CG SD sing N N 309 MET CG HG2 sing N N 310 MET CG HG3 sing N N 311 MET SD CE sing N N 312 MET CE HE1 sing N N 313 MET CE HE2 sing N N 314 MET CE HE3 sing N N 315 MET OXT HXT sing N N 316 PHE N CA sing N N 317 PHE N H sing N N 318 PHE N H2 sing N N 319 PHE CA C sing N N 320 PHE CA CB sing N N 321 PHE CA HA sing N N 322 PHE C O doub N N 323 PHE C OXT sing N N 324 PHE CB CG sing N N 325 PHE CB HB2 sing N N 326 PHE CB HB3 sing N N 327 PHE CG CD1 doub Y N 328 PHE CG CD2 sing Y N 329 PHE CD1 CE1 sing Y N 330 PHE CD1 HD1 sing N N 331 PHE CD2 CE2 doub Y N 332 PHE CD2 HD2 sing N N 333 PHE CE1 CZ doub Y N 334 PHE CE1 HE1 sing N N 335 PHE CE2 CZ sing Y N 336 PHE CE2 HE2 sing N N 337 PHE CZ HZ sing N N 338 PHE OXT HXT sing N N 339 PRO N CA sing N N 340 PRO N CD sing N N 341 PRO N H sing N N 342 PRO CA C sing N N 343 PRO CA CB sing N N 344 PRO CA HA sing N N 345 PRO C O doub N N 346 PRO C OXT sing N N 347 PRO CB CG sing N N 348 PRO CB HB2 sing N N 349 PRO CB HB3 sing N N 350 PRO CG CD sing N N 351 PRO CG HG2 sing N N 352 PRO CG HG3 sing N N 353 PRO CD HD2 sing N N 354 PRO CD HD3 sing N N 355 PRO OXT HXT sing N N 356 SER N CA sing N N 357 SER N H sing N N 358 SER N H2 sing N N 359 SER CA C sing N N 360 SER CA CB sing N N 361 SER CA HA sing N N 362 SER C O doub N N 363 SER C OXT sing N N 364 SER CB OG sing N N 365 SER CB HB2 sing N N 366 SER CB HB3 sing N N 367 SER OG HG sing N N 368 SER OXT HXT sing N N 369 THR N CA sing N N 370 THR N H sing N N 371 THR N H2 sing N N 372 THR CA C sing N N 373 THR CA CB sing N N 374 THR CA HA sing N N 375 THR C O doub N N 376 THR C OXT sing N N 377 THR CB OG1 sing N N 378 THR CB CG2 sing N N 379 THR CB HB sing N N 380 THR OG1 HG1 sing N N 381 THR CG2 HG21 sing N N 382 THR CG2 HG22 sing N N 383 THR CG2 HG23 sing N N 384 THR OXT HXT sing N N 385 TRP N CA sing N N 386 TRP N H sing N N 387 TRP N H2 sing N N 388 TRP CA C sing N N 389 TRP CA CB sing N N 390 TRP CA HA sing N N 391 TRP C O doub N N 392 TRP C OXT sing N N 393 TRP CB CG sing N N 394 TRP CB HB2 sing N N 395 TRP CB HB3 sing N N 396 TRP CG CD1 doub Y N 397 TRP CG CD2 sing Y N 398 TRP CD1 NE1 sing Y N 399 TRP CD1 HD1 sing N N 400 TRP CD2 CE2 doub Y N 401 TRP CD2 CE3 sing Y N 402 TRP NE1 CE2 sing Y N 403 TRP NE1 HE1 sing N N 404 TRP CE2 CZ2 sing Y N 405 TRP CE3 CZ3 doub Y N 406 TRP CE3 HE3 sing N N 407 TRP CZ2 CH2 doub Y N 408 TRP CZ2 HZ2 sing N N 409 TRP CZ3 CH2 sing Y N 410 TRP CZ3 HZ3 sing N N 411 TRP CH2 HH2 sing N N 412 TRP OXT HXT sing N N 413 TYR N CA sing N N 414 TYR N H sing N N 415 TYR N H2 sing N N 416 TYR CA C sing N N 417 TYR CA CB sing N N 418 TYR CA HA sing N N 419 TYR C O doub N N 420 TYR C OXT sing N N 421 TYR CB CG sing N N 422 TYR CB HB2 sing N N 423 TYR CB HB3 sing N N 424 TYR CG CD1 doub Y N 425 TYR CG CD2 sing Y N 426 TYR CD1 CE1 sing Y N 427 TYR CD1 HD1 sing N N 428 TYR CD2 CE2 doub Y N 429 TYR CD2 HD2 sing N N 430 TYR CE1 CZ doub Y N 431 TYR CE1 HE1 sing N N 432 TYR CE2 CZ sing Y N 433 TYR CE2 HE2 sing N N 434 TYR CZ OH sing N N 435 TYR OH HH sing N N 436 TYR OXT HXT sing N N 437 VAL N CA sing N N 438 VAL N H sing N N 439 VAL N H2 sing N N 440 VAL CA C sing N N 441 VAL CA CB sing N N 442 VAL CA HA sing N N 443 VAL C O doub N N 444 VAL C OXT sing N N 445 VAL CB CG1 sing N N 446 VAL CB CG2 sing N N 447 VAL CB HB sing N N 448 VAL CG1 HG11 sing N N 449 VAL CG1 HG12 sing N N 450 VAL CG1 HG13 sing N N 451 VAL CG2 HG21 sing N N 452 VAL CG2 HG22 sing N N 453 VAL CG2 HG23 sing N N 454 VAL OXT HXT sing N N 455 # _em_admin.current_status REL _em_admin.deposition_date 2024-10-25 _em_admin.deposition_site RCSB _em_admin.entry_id 9E4R _em_admin.last_update 2025-03-19 _em_admin.map_release_date 2025-03-19 _em_admin.title 'Escherichia coli encapsulin-associated DyP peroxidase' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 150 mM NaCl 1 'sodium chloride' 1 20 mM C4H11NO3 2 'tris(hydroxymethyl)aminomethane' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1169357 _em_entity_assembly_naturalsource.organism 'Escherichia coli' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain KTE40 _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ;Particles were picked from micrographs collected on two different grids using TFS Glacios and FEI Talos Arctica cryogenic electron microscopes. ; _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # loop_ _em_image_recording.average_exposure_time _em_image_recording.avg_electron_dose_per_subtomogram _em_image_recording.avg_electron_dose_per_image _em_image_recording.details _em_image_recording.detector_mode _em_image_recording.film_or_detector_model _em_image_recording.id _em_image_recording.imaging_id _em_image_recording.num_diffraction_images _em_image_recording.num_grids_imaged _em_image_recording.num_real_images 6 ? 47.84 ? COUNTING 'GATAN K2 SUMMIT (4k x 4k)' 1 1 ? 1 123 4 ? 46.24 ? COUNTING 'GATAN K2 SUMMIT (4k x 4k)' 2 2 ? 1 206 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 115178 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.5.1 'IMAGE ACQUISITION' ? 2 ? ? 1 Leginon ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.5.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.8 OTHER ? 8 ? ? ? ? ? 'IMAGE ACQUISITION' ? 9 ? ? 2 Leginon ? 'MODEL REFINEMENT' 'real space refinement' 10 ? 1 ? PHENIX 1.2.1-4887 'MODEL REFINEMENT' ? 11 ? 1 ? Coot 0.9.8.1 'INITIAL EULER ASSIGNMENT' ? 12 1 ? ? cryoSPARC 4.5.1 'FINAL EULER ASSIGNMENT' ? 13 1 ? ? cryoSPARC 4.5.1 CLASSIFICATION ? 14 1 ? ? ? ? RECONSTRUCTION 'Local Refinement' 15 1 ? ? cryoSPARC 4.5.1 # _em_specimen.concentration 0.5 _em_specimen.details 'Sample was frozen on two grids, one at 0.5 mg/mL and the other at 0.25 mg/mL.' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code A0A747AN60 # _atom_sites.entry_id 9E4R _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C FE N O S # loop_ #