HEADER VIRUS LIKE PARTICLE 28-OCT-24 9E5E TITLE ESCHERICHIA COLI DYP PEROXIDASE-LOADED ENCAPSULIN SHELL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DYP PEROXIDASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: RESIDUES 1-338 AND 349-351 ARE NOT RESOLVED. RESIDUES COMPND 10 339-348 ARE THE DYP-PEROXIDASE TARGETING PEPTIDE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1169357; SOURCE 4 STRAIN: KTE40; SOURCE 5 GENE: FPI65_30875, FWK02_13915, GP965_08895, GP975_08820, SOURCE 6 GP979_05485, GQM21_27145, GRW05_08220, KQO22_005109; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 1169357; SOURCE 12 STRAIN: KTE40; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DYE-DECOLORIZING PEROXIDASE, PEROXIDASE, DYP, ENCAPSULIN, VIRUS LIKE KEYWDS 2 PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR M.P.ANDREAS,N.C.UBILLA,T.W.GIESSEN REVDAT 1 19-MAR-25 9E5E 0 JRNL AUTH N.C.UBILLA-RODRIGUEZ,M.P.ANDREAS,T.W.GIESSEN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A WIDESPREAD JRNL TITL 2 ENTEROBACTERIAL PEROXIDASE ENCAPSULIN. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 39651212 JRNL DOI 10.1101/2024.11.27.625667 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, CRYOSPARC, UCSF REMARK 3 CHIMERAX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, COOT, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 85.500 REMARK 3 REMARK 3 FITTING PROCEDURE : THE ALPHAFOLD MODEL WAS PLACED USING CHIMERAX, REMARK 3 FOLLOWED BY ITERATIVE MANUAL REFINEMENT IN COOT FOLLOWED BY REMARK 3 PHENIX REAL SPACE REFINEMENTS. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.170 REMARK 3 NUMBER OF PARTICLES : 286236 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: HOMOGENEOUS REFINEMENT WAS USED AGAINST AN AB REMARK 3 -INITIO MAP WITH I SYMMETRY, PER-PARTICLE DEFOCUS OPTIMIZATION REMARK 3 ENABLED, PER-GROUP CTF PARAMETER OPTIMIZATION ENABLED, AND EWALD REMARK 3 SPHERE CORRECTION ENABLED USING A POSITIVE CURVATURE SIGN. REMARK 4 REMARK 4 9E5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1000289486. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ESCHERICHIA COLI KTE40 DYP REMARK 245 PEROXIDASE-LOADED ENCAPSULIN REMARK 245 SHELL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.80 REMARK 245 SAMPLE SUPPORT DETAILS : GRIDS WERE GLOW DISCHARGED FOR REMARK 245 60 SECONDS AT 5 MA UNDER VACUUM. REMARK 245 SAMPLE VITRIFICATION DETAILS : GRIDS WERE FROZEN WITH A BLOT REMARK 245 FORCE OF 20, BLOT TIME OF 4 REMARK 245 SECONDS, 100% HUMIDITY, AND REMARK 245 CHAMBER TEMPERATURE OF 22 REMARK 245 DEGREES C. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2065 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3991.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809016 0.500001 0.309018 -100.70914 REMARK 350 BIOMT2 2 -0.500001 0.309017 0.809016 62.24185 REMARK 350 BIOMT3 2 0.309017 -0.809017 0.500001 162.95045 REMARK 350 BIOMT1 3 0.499998 0.309017 0.809018 -100.70892 REMARK 350 BIOMT2 3 -0.309018 -0.809017 0.499999 263.65989 REMARK 350 BIOMT3 3 0.809018 -0.500000 -0.309015 162.95028 REMARK 350 BIOMT1 4 0.499998 -0.309018 0.809018 0.00036 REMARK 350 BIOMT2 4 0.309017 -0.809017 -0.500000 325.90124 REMARK 350 BIOMT3 4 0.809018 0.499999 -0.309015 -0.00028 REMARK 350 BIOMT1 5 0.809016 -0.500001 0.309017 62.24189 REMARK 350 BIOMT2 5 0.500001 0.309017 -0.809017 162.95046 REMARK 350 BIOMT3 5 0.309018 0.809016 0.500001 -100.70909 REMARK 350 BIOMT1 6 0.309018 0.809016 0.500001 -100.70929 REMARK 350 BIOMT2 6 0.809016 -0.500001 0.309017 62.24226 REMARK 350 BIOMT3 6 0.500001 0.309017 -0.809016 162.95022 REMARK 350 BIOMT1 7 0.000000 0.000000 1.000000 -0.00017 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00040 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 -0.00023 REMARK 350 BIOMT1 8 0.309017 -0.809017 0.500001 162.95027 REMARK 350 BIOMT2 8 0.809016 0.500001 0.309018 -100.70875 REMARK 350 BIOMT3 8 -0.500001 0.309017 0.809016 62.24163 REMARK 350 BIOMT1 9 0.809018 -0.500000 -0.309015 162.95006 REMARK 350 BIOMT2 9 0.499998 0.309017 0.809018 -100.70857 REMARK 350 BIOMT3 9 -0.309018 -0.809017 0.499999 263.65967 REMARK 350 BIOMT1 10 0.809018 0.499999 -0.309015 -0.00051 REMARK 350 BIOMT2 10 0.499998 -0.309018 0.809018 0.00069 REMARK 350 BIOMT3 10 0.309017 -0.809017 -0.500000 325.90101 REMARK 350 BIOMT1 11 -0.809019 -0.499998 0.309016 325.90059 REMARK 350 BIOMT2 11 -0.499998 0.309017 -0.809019 325.90077 REMARK 350 BIOMT3 11 0.309016 -0.809019 -0.499998 325.90107 REMARK 350 BIOMT1 12 -0.309019 -0.809017 -0.499999 426.60973 REMARK 350 BIOMT2 12 -0.809015 0.500002 -0.309019 263.65891 REMARK 350 BIOMT3 12 0.500002 0.309014 -0.809017 162.95063 REMARK 350 BIOMT1 13 0.000000 -0.000002 -1.000000 325.90097 REMARK 350 BIOMT2 13 -1.000000 0.000002 0.000000 325.90046 REMARK 350 BIOMT3 13 0.000002 1.000000 -0.000002 -0.00017 REMARK 350 BIOMT1 14 -0.309016 0.809016 -0.500002 162.95039 REMARK 350 BIOMT2 14 -0.809017 -0.500000 -0.309016 426.60973 REMARK 350 BIOMT3 14 -0.500000 0.309020 0.809016 62.24114 REMARK 350 BIOMT1 15 -0.809017 0.500002 0.309014 162.95015 REMARK 350 BIOMT2 15 -0.499999 -0.309018 -0.809017 426.60992 REMARK 350 BIOMT3 15 -0.309019 -0.809015 0.500001 263.65919 REMARK 350 BIOMT1 16 -0.499999 -0.309019 -0.809017 426.60958 REMARK 350 BIOMT2 16 -0.309019 -0.809015 0.500002 263.65929 REMARK 350 BIOMT3 16 -0.809017 0.500002 0.309014 162.95037 REMARK 350 BIOMT1 17 -0.499997 0.309016 -0.809019 325.90045 REMARK 350 BIOMT2 17 0.309016 -0.809019 -0.499998 325.90117 REMARK 350 BIOMT3 17 -0.809019 -0.499998 0.309016 325.90081 REMARK 350 BIOMT1 18 -0.809015 0.500002 -0.309019 263.65855 REMARK 350 BIOMT2 18 0.500002 0.309014 -0.809017 162.95072 REMARK 350 BIOMT3 18 -0.309019 -0.809017 -0.499999 426.60992 REMARK 350 BIOMT1 19 -1.000000 0.000002 0.000000 325.90007 REMARK 350 BIOMT2 19 0.000002 1.000000 -0.000002 -0.00007 REMARK 350 BIOMT3 19 0.000000 -0.000002 -1.000000 325.90113 REMARK 350 BIOMT1 20 -0.809017 -0.500000 -0.309016 426.60935 REMARK 350 BIOMT2 20 -0.500000 0.309020 0.809016 62.24125 REMARK 350 BIOMT3 20 -0.309016 0.809016 -0.500002 162.95056 REMARK 350 BIOMT1 21 0.809016 -0.500000 0.309020 62.24130 REMARK 350 BIOMT2 21 -0.500002 -0.309016 0.809016 162.95093 REMARK 350 BIOMT3 21 -0.309016 -0.809017 -0.500000 426.60970 REMARK 350 BIOMT1 22 1.000000 -0.000002 0.000002 0.00000 REMARK 350 BIOMT2 22 -0.000002 -1.000000 0.000000 325.90153 REMARK 350 BIOMT3 22 0.000002 0.000000 -1.000000 325.90047 REMARK 350 BIOMT1 23 0.809018 0.499998 0.309017 -100.70891 REMARK 350 BIOMT2 23 0.499999 -0.309018 -0.809017 263.65991 REMARK 350 BIOMT3 23 -0.309015 0.809018 -0.500000 162.94979 REMARK 350 BIOMT1 24 0.500001 0.309018 0.809016 -100.70914 REMARK 350 BIOMT2 24 0.309017 0.809016 -0.500001 62.24187 REMARK 350 BIOMT3 24 -0.809016 0.500001 0.309017 162.94996 REMARK 350 BIOMT1 25 0.499999 -0.309015 0.809018 -0.00038 REMARK 350 BIOMT2 25 -0.309018 0.809018 0.499998 0.00029 REMARK 350 BIOMT3 25 -0.809017 -0.500000 0.309017 325.90075 REMARK 350 BIOMT1 26 0.000002 1.000000 -0.000002 -0.00040 REMARK 350 BIOMT2 26 0.000000 -0.000002 -1.000000 325.90130 REMARK 350 BIOMT3 26 -1.000000 0.000002 0.000000 325.90030 REMARK 350 BIOMT1 27 -0.500000 0.309020 0.809016 62.24089 REMARK 350 BIOMT2 27 -0.309016 0.809016 -0.500002 162.95070 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309016 426.60954 REMARK 350 BIOMT1 28 -0.309019 -0.809015 0.500002 263.65894 REMARK 350 BIOMT2 28 -0.809017 0.500002 0.309014 162.95046 REMARK 350 BIOMT3 28 -0.499999 -0.309019 -0.809017 426.60977 REMARK 350 BIOMT1 29 0.309016 -0.809019 -0.499998 325.90084 REMARK 350 BIOMT2 29 -0.809019 -0.499998 0.309016 325.90091 REMARK 350 BIOMT3 29 -0.499998 0.309016 -0.809019 325.90068 REMARK 350 BIOMT1 30 0.500002 0.309014 -0.809017 162.95042 REMARK 350 BIOMT2 30 -0.309019 -0.809017 -0.499999 426.61007 REMARK 350 BIOMT3 30 -0.809015 0.500002 -0.309019 263.65880 REMARK 350 BIOMT1 31 -0.309018 -0.809017 0.499999 263.65953 REMARK 350 BIOMT2 31 0.809018 -0.500000 -0.309015 162.95048 REMARK 350 BIOMT3 31 0.499998 0.309017 0.809018 -100.70872 REMARK 350 BIOMT1 32 0.309017 -0.809017 -0.500000 325.90084 REMARK 350 BIOMT2 32 0.809018 0.499999 -0.309015 -0.00012 REMARK 350 BIOMT3 32 0.499998 -0.309018 0.809018 0.00052 REMARK 350 BIOMT1 33 0.500001 0.309017 -0.809017 162.95005 REMARK 350 BIOMT2 33 0.309018 0.809016 0.500001 -100.70891 REMARK 350 BIOMT3 33 0.809016 -0.500001 0.309017 62.24203 REMARK 350 BIOMT1 34 0.000000 1.000000 0.000000 -0.00040 REMARK 350 BIOMT2 34 0.000000 0.000000 1.000000 0.00023 REMARK 350 BIOMT3 34 1.000000 0.000000 0.000000 0.00017 REMARK 350 BIOMT1 35 -0.500001 0.309017 0.809016 62.24148 REMARK 350 BIOMT2 35 0.309017 -0.809017 0.500000 162.95069 REMARK 350 BIOMT3 35 0.809016 0.500000 0.309018 -100.70894 REMARK 350 BIOMT1 36 -0.500000 0.309017 -0.809017 325.90045 REMARK 350 BIOMT2 36 -0.309015 0.809018 0.500000 -0.00038 REMARK 350 BIOMT3 36 0.809018 0.499998 -0.309018 0.00038 REMARK 350 BIOMT1 37 -0.809017 0.499999 -0.309018 263.65914 REMARK 350 BIOMT2 37 -0.500000 -0.309016 0.809018 162.95021 REMARK 350 BIOMT3 37 0.309017 0.809018 0.499999 -100.70887 REMARK 350 BIOMT1 38 -1.000000 0.000000 -0.000002 325.90080 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000002 325.90086 REMARK 350 BIOMT3 38 -0.000002 0.000002 1.000000 0.00007 REMARK 350 BIOMT1 39 -0.809017 -0.499999 -0.309019 426.60957 REMARK 350 BIOMT2 39 0.500002 -0.309018 -0.809015 263.65931 REMARK 350 BIOMT3 39 0.309014 -0.809017 0.500001 162.95086 REMARK 350 BIOMT1 40 -0.500000 -0.309016 -0.809017 426.60935 REMARK 350 BIOMT2 40 0.309020 0.809016 -0.500000 62.24127 REMARK 350 BIOMT3 40 0.809016 -0.500002 -0.309016 162.95105 REMARK 350 BIOMT1 41 0.809016 -0.500002 -0.309016 162.95088 REMARK 350 BIOMT2 41 -0.500000 -0.309016 -0.809017 426.60973 REMARK 350 BIOMT3 41 0.309020 0.809016 -0.500000 62.24116 REMARK 350 BIOMT1 42 0.809018 0.499998 -0.309018 0.00022 REMARK 350 BIOMT2 42 -0.500000 0.309017 -0.809017 325.90084 REMARK 350 BIOMT3 42 -0.309015 0.809018 0.499999 -0.00054 REMARK 350 BIOMT1 43 0.309017 0.809018 0.499998 -100.70906 REMARK 350 BIOMT2 43 -0.809017 0.499999 -0.309018 263.65950 REMARK 350 BIOMT3 43 -0.500000 -0.309015 0.809018 162.95002 REMARK 350 BIOMT1 44 -0.000002 0.000002 1.000000 -0.00016 REMARK 350 BIOMT2 44 -1.000000 0.000000 -0.000002 325.90113 REMARK 350 BIOMT3 44 0.000000 -1.000000 0.000002 325.90070 REMARK 350 BIOMT1 45 0.309014 -0.809017 0.500002 162.95064 REMARK 350 BIOMT2 45 -0.809017 -0.499999 -0.309019 426.60991 REMARK 350 BIOMT3 45 0.500002 -0.309019 -0.809015 263.65920 REMARK 350 BIOMT1 46 -0.309018 0.809018 0.499998 -0.00004 REMARK 350 BIOMT2 46 -0.809017 -0.500000 0.309017 325.90098 REMARK 350 BIOMT3 46 0.499999 -0.309015 0.809018 -0.00014 REMARK 350 BIOMT1 47 -0.500003 -0.309016 0.809016 162.95062 REMARK 350 BIOMT2 47 -0.309016 -0.809017 -0.500000 426.60988 REMARK 350 BIOMT3 47 0.809016 -0.500000 0.309020 62.24155 REMARK 350 BIOMT1 48 -0.000002 -1.000000 0.000000 325.90120 REMARK 350 BIOMT2 48 0.000002 0.000000 -1.000000 325.90063 REMARK 350 BIOMT3 48 1.000000 -0.000002 0.000002 0.00023 REMARK 350 BIOMT1 49 0.499999 -0.309018 -0.809017 263.65955 REMARK 350 BIOMT2 49 -0.309015 0.809018 -0.500000 162.94998 REMARK 350 BIOMT3 49 0.809018 0.499998 0.309017 -100.70871 REMARK 350 BIOMT1 50 0.309017 0.809016 -0.500001 62.24150 REMARK 350 BIOMT2 50 -0.809017 0.500001 0.309017 162.95020 REMARK 350 BIOMT3 50 0.500001 0.309018 0.809016 -100.70894 REMARK 350 BIOMT1 51 -0.500000 -0.309015 0.809018 162.94980 REMARK 350 BIOMT2 51 0.309017 0.809018 0.499998 -100.70872 REMARK 350 BIOMT3 51 -0.809017 0.500000 -0.309018 263.65928 REMARK 350 BIOMT1 52 0.000000 -1.000000 0.000002 325.90047 REMARK 350 BIOMT2 52 -0.000002 0.000002 1.000000 0.00016 REMARK 350 BIOMT3 52 -1.000000 0.000000 -0.000002 325.90096 REMARK 350 BIOMT1 53 0.500002 -0.309019 -0.809015 263.65895 REMARK 350 BIOMT2 53 0.309014 -0.809017 0.500002 162.95095 REMARK 350 BIOMT3 53 -0.809017 -0.499999 -0.309019 426.60977 REMARK 350 BIOMT1 54 0.309020 0.809016 -0.500000 62.24091 REMARK 350 BIOMT2 54 0.809016 -0.500002 -0.309016 162.95119 REMARK 350 BIOMT3 54 -0.500000 -0.309016 -0.809018 426.60955 REMARK 350 BIOMT1 55 -0.309015 0.809018 0.499999 -0.00077 REMARK 350 BIOMT2 55 0.809018 0.499998 -0.309018 0.00055 REMARK 350 BIOMT3 55 -0.500000 0.309017 -0.809017 325.90061 REMARK 350 BIOMT1 56 0.000002 0.000000 -1.000000 325.90024 REMARK 350 BIOMT2 56 1.000000 -0.000002 0.000002 0.00033 REMARK 350 BIOMT3 56 -0.000002 -1.000000 0.000000 325.90136 REMARK 350 BIOMT1 57 -0.309015 0.809018 -0.500000 162.94957 REMARK 350 BIOMT2 57 0.809018 0.499998 0.309017 -100.70857 REMARK 350 BIOMT3 57 0.499999 -0.309018 -0.809017 263.65969 REMARK 350 BIOMT1 58 -0.809017 0.500001 0.309017 162.94978 REMARK 350 BIOMT2 58 0.500001 0.309017 0.809016 -100.70876 REMARK 350 BIOMT3 58 0.309017 0.809016 -0.500001 62.24164 REMARK 350 BIOMT1 59 -0.809017 -0.500000 0.309017 325.90058 REMARK 350 BIOMT2 59 0.499999 -0.309016 0.809018 0.00002 REMARK 350 BIOMT3 59 -0.309018 0.809018 0.499999 0.00012 REMARK 350 BIOMT1 60 -0.309016 -0.809017 -0.500000 426.60950 REMARK 350 BIOMT2 60 0.809016 -0.500000 0.309020 62.24166 REMARK 350 BIOMT3 60 -0.500002 -0.309016 0.809016 162.95079 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 268 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 CYS B 3 REMARK 465 PRO B 4 REMARK 465 PHE B 5 REMARK 465 SER B 6 REMARK 465 GLN B 7 REMARK 465 SER B 8 REMARK 465 VAL B 9 REMARK 465 SER B 10 REMARK 465 GLN B 11 REMARK 465 PRO B 12 REMARK 465 VAL B 13 REMARK 465 ASP B 14 REMARK 465 GLU B 15 REMARK 465 ARG B 16 REMARK 465 LEU B 17 REMARK 465 THR B 18 REMARK 465 ARG B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 ILE B 22 REMARK 465 PHE B 23 REMARK 465 LEU B 24 REMARK 465 VAL B 25 REMARK 465 VAL B 26 REMARK 465 THR B 27 REMARK 465 ILE B 28 REMARK 465 ASN B 29 REMARK 465 PRO B 30 REMARK 465 GLY B 31 REMARK 465 LYS B 32 REMARK 465 ALA B 33 REMARK 465 ALA B 34 REMARK 465 GLU B 35 REMARK 465 VAL B 36 REMARK 465 ALA B 37 REMARK 465 VAL B 38 REMARK 465 ARG B 39 REMARK 465 ALA B 40 REMARK 465 HIS B 41 REMARK 465 CYS B 42 REMARK 465 SER B 43 REMARK 465 ILE B 44 REMARK 465 LEU B 45 REMARK 465 SER B 46 REMARK 465 SER B 47 REMARK 465 LEU B 48 REMARK 465 ILE B 49 REMARK 465 ARG B 50 REMARK 465 GLY B 51 REMARK 465 VAL B 52 REMARK 465 GLY B 53 REMARK 465 PHE B 54 REMARK 465 ARG B 55 REMARK 465 ILE B 56 REMARK 465 SER B 57 REMARK 465 ASP B 58 REMARK 465 GLY B 59 REMARK 465 GLY B 60 REMARK 465 LEU B 61 REMARK 465 SER B 62 REMARK 465 CYS B 63 REMARK 465 VAL B 64 REMARK 465 MET B 65 REMARK 465 GLY B 66 REMARK 465 VAL B 67 REMARK 465 SER B 68 REMARK 465 GLU B 69 REMARK 465 GLY B 70 REMARK 465 GLY B 71 REMARK 465 TRP B 72 REMARK 465 GLU B 73 REMARK 465 ARG B 74 REMARK 465 LEU B 75 REMARK 465 PHE B 76 REMARK 465 GLY B 77 REMARK 465 ASP B 78 REMARK 465 THR B 79 REMARK 465 LYS B 80 REMARK 465 PRO B 81 REMARK 465 GLU B 82 REMARK 465 TYR B 83 REMARK 465 LEU B 84 REMARK 465 HIS B 85 REMARK 465 VAL B 86 REMARK 465 PHE B 87 REMARK 465 ARG B 88 REMARK 465 GLU B 89 REMARK 465 ILE B 90 REMARK 465 ASN B 91 REMARK 465 GLY B 92 REMARK 465 VAL B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 ALA B 96 REMARK 465 PRO B 97 REMARK 465 SER B 98 REMARK 465 THR B 99 REMARK 465 PRO B 100 REMARK 465 GLY B 101 REMARK 465 ASP B 102 REMARK 465 LEU B 103 REMARK 465 LEU B 104 REMARK 465 TYR B 105 REMARK 465 HIS B 106 REMARK 465 ILE B 107 REMARK 465 ARG B 108 REMARK 465 ALA B 109 REMARK 465 ALA B 110 REMARK 465 ARG B 111 REMARK 465 MET B 112 REMARK 465 ASP B 113 REMARK 465 LEU B 114 REMARK 465 CYS B 115 REMARK 465 PHE B 116 REMARK 465 GLU B 117 REMARK 465 LEU B 118 REMARK 465 ALA B 119 REMARK 465 SER B 120 REMARK 465 ARG B 121 REMARK 465 ILE B 122 REMARK 465 LEU B 123 REMARK 465 SER B 124 REMARK 465 ASP B 125 REMARK 465 LEU B 126 REMARK 465 GLY B 127 REMARK 465 ASN B 128 REMARK 465 SER B 129 REMARK 465 VAL B 130 REMARK 465 SER B 131 REMARK 465 VAL B 132 REMARK 465 VAL B 133 REMARK 465 ASP B 134 REMARK 465 SER B 135 REMARK 465 VAL B 136 REMARK 465 GLN B 137 REMARK 465 GLY B 138 REMARK 465 PHE B 139 REMARK 465 ARG B 140 REMARK 465 TYR B 141 REMARK 465 PHE B 142 REMARK 465 ASP B 143 REMARK 465 ASP B 144 REMARK 465 ARG B 145 REMARK 465 ASP B 146 REMARK 465 LEU B 147 REMARK 465 LEU B 148 REMARK 465 GLY B 149 REMARK 465 PHE B 150 REMARK 465 VAL B 151 REMARK 465 ASP B 152 REMARK 465 GLY B 153 REMARK 465 THR B 154 REMARK 465 GLU B 155 REMARK 465 ASN B 156 REMARK 465 PRO B 157 REMARK 465 VAL B 158 REMARK 465 ALA B 159 REMARK 465 GLN B 160 REMARK 465 ALA B 161 REMARK 465 ALA B 162 REMARK 465 VAL B 163 REMARK 465 ASP B 164 REMARK 465 ALA B 165 REMARK 465 THR B 166 REMARK 465 LEU B 167 REMARK 465 ILE B 168 REMARK 465 GLY B 169 REMARK 465 ASP B 170 REMARK 465 GLU B 171 REMARK 465 ASP B 172 REMARK 465 MET B 173 REMARK 465 VAL B 174 REMARK 465 PHE B 175 REMARK 465 ALA B 176 REMARK 465 GLY B 177 REMARK 465 GLY B 178 REMARK 465 SER B 179 REMARK 465 TYR B 180 REMARK 465 VAL B 181 REMARK 465 ILE B 182 REMARK 465 VAL B 183 REMARK 465 GLN B 184 REMARK 465 LYS B 185 REMARK 465 TYR B 186 REMARK 465 LEU B 187 REMARK 465 HIS B 188 REMARK 465 ASP B 189 REMARK 465 LEU B 190 REMARK 465 ASP B 191 REMARK 465 LYS B 192 REMARK 465 TRP B 193 REMARK 465 ASN B 194 REMARK 465 ALA B 195 REMARK 465 ILE B 196 REMARK 465 PRO B 197 REMARK 465 VAL B 198 REMARK 465 GLU B 199 REMARK 465 GLN B 200 REMARK 465 GLN B 201 REMARK 465 GLU B 202 REMARK 465 LYS B 203 REMARK 465 ILE B 204 REMARK 465 ILE B 205 REMARK 465 GLY B 206 REMARK 465 ARG B 207 REMARK 465 GLU B 208 REMARK 465 LYS B 209 REMARK 465 LEU B 210 REMARK 465 SER B 211 REMARK 465 ASP B 212 REMARK 465 ILE B 213 REMARK 465 GLU B 214 REMARK 465 LEU B 215 REMARK 465 ARG B 216 REMARK 465 ASP B 217 REMARK 465 ALA B 218 REMARK 465 ASP B 219 REMARK 465 LYS B 220 REMARK 465 PRO B 221 REMARK 465 SER B 222 REMARK 465 TYR B 223 REMARK 465 ALA B 224 REMARK 465 HIS B 225 REMARK 465 ASN B 226 REMARK 465 VAL B 227 REMARK 465 LEU B 228 REMARK 465 THR B 229 REMARK 465 SER B 230 REMARK 465 ILE B 231 REMARK 465 GLU B 232 REMARK 465 GLU B 233 REMARK 465 ASP B 234 REMARK 465 GLY B 235 REMARK 465 GLU B 236 REMARK 465 ASP B 237 REMARK 465 VAL B 238 REMARK 465 ASP B 239 REMARK 465 ILE B 240 REMARK 465 LEU B 241 REMARK 465 ARG B 242 REMARK 465 ASP B 243 REMARK 465 ASN B 244 REMARK 465 MET B 245 REMARK 465 PRO B 246 REMARK 465 PHE B 247 REMARK 465 GLY B 248 REMARK 465 ASP B 249 REMARK 465 PRO B 250 REMARK 465 GLY B 251 REMARK 465 LYS B 252 REMARK 465 GLY B 253 REMARK 465 GLU B 254 REMARK 465 PHE B 255 REMARK 465 GLY B 256 REMARK 465 THR B 257 REMARK 465 TYR B 258 REMARK 465 PHE B 259 REMARK 465 ILE B 260 REMARK 465 GLY B 261 REMARK 465 TYR B 262 REMARK 465 SER B 263 REMARK 465 ARG B 264 REMARK 465 LYS B 265 REMARK 465 PRO B 266 REMARK 465 GLU B 267 REMARK 465 ARG B 268 REMARK 465 ILE B 269 REMARK 465 GLU B 270 REMARK 465 ARG B 271 REMARK 465 MET B 272 REMARK 465 LEU B 273 REMARK 465 GLU B 274 REMARK 465 ASN B 275 REMARK 465 MET B 276 REMARK 465 PHE B 277 REMARK 465 ILE B 278 REMARK 465 GLY B 279 REMARK 465 ASN B 280 REMARK 465 PRO B 281 REMARK 465 PRO B 282 REMARK 465 GLY B 283 REMARK 465 ASN B 284 REMARK 465 TYR B 285 REMARK 465 ASP B 286 REMARK 465 ARG B 287 REMARK 465 ILE B 288 REMARK 465 LEU B 289 REMARK 465 ASP B 290 REMARK 465 VAL B 291 REMARK 465 SER B 292 REMARK 465 ARG B 293 REMARK 465 ALA B 294 REMARK 465 ILE B 295 REMARK 465 THR B 296 REMARK 465 GLY B 297 REMARK 465 THR B 298 REMARK 465 LEU B 299 REMARK 465 PHE B 300 REMARK 465 PHE B 301 REMARK 465 VAL B 302 REMARK 465 PRO B 303 REMARK 465 THR B 304 REMARK 465 THR B 305 REMARK 465 SER B 306 REMARK 465 PHE B 307 REMARK 465 LEU B 308 REMARK 465 ASP B 309 REMARK 465 SER B 310 REMARK 465 ILE B 311 REMARK 465 GLU B 312 REMARK 465 PRO B 313 REMARK 465 GLN B 314 REMARK 465 SER B 315 REMARK 465 ALA B 316 REMARK 465 PRO B 317 REMARK 465 GLY B 318 REMARK 465 GLN B 319 REMARK 465 GLN B 320 REMARK 465 GLY B 321 REMARK 465 ASP B 322 REMARK 465 ASP B 323 REMARK 465 VAL B 324 REMARK 465 ILE B 325 REMARK 465 ASN B 326 REMARK 465 THR B 327 REMARK 465 LEU B 328 REMARK 465 ARG B 329 REMARK 465 SER B 330 REMARK 465 THR B 331 REMARK 465 ALA B 332 REMARK 465 ILE B 333 REMARK 465 LYS B 334 REMARK 465 GLY B 335 REMARK 465 ASP B 336 REMARK 465 ILE B 337 REMARK 465 MET B 338 REMARK 465 LYS B 349 REMARK 465 GLU B 350 REMARK 465 VAL B 351 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 185 -146.72 60.02 REMARK 500 THR A 238 -168.50 -126.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-47525 RELATED DB: EMDB REMARK 900 ESCHERICHIA COLI DYP PEROXIDASE-LOADED ENCAPSULIN SHELL DBREF1 9E5E A 1 268 UNP A0A3L1NQK1_ECOLX DBREF2 9E5E A A0A3L1NQK1 1 268 DBREF 9E5E B 1 351 PDB 9E5E 9E5E 1 351 SEQRES 1 A 268 MET ASN ASN LEU HIS ARG GLU LEU ALA PRO VAL SER ASP SEQRES 2 A 268 ALA ALA TRP GLU GLN ILE GLU GLU GLU ALA THR ARG THR SEQRES 3 A 268 LEU LYS ARG PHE LEU ALA ALA ARG ARG VAL VAL ASP VAL SEQRES 4 A 268 THR ASP PRO GLN GLY ALA ALA LEU SER ALA VAL GLY THR SEQRES 5 A 268 GLY HIS VAL ALA TYR LEU ASP GLY PRO CYS ALA GLY VAL SEQRES 6 A 268 SER ALA VAL LYS ARG GLN VAL LEU PRO VAL VAL GLU PHE SEQRES 7 A 268 ARG VAL PRO PHE LYS LEU THR ARG GLN ALA ILE ASP ASP SEQRES 8 A 268 VAL GLU ARG GLY SER GLN ASP SER ASP TRP SER PRO LEU SEQRES 9 A 268 LYS GLU ALA ALA ARG LYS ILE ALA ALA ALA GLU ASP GLN SEQRES 10 A 268 THR ILE PHE ASP GLY TYR MET ALA ALA GLY ILE ALA GLY SEQRES 11 A 268 ILE ARG PRO GLN SER SER ASN THR PRO LEU THR LEU PRO SEQRES 12 A 268 ALA THR ALA SER ASP TYR PRO THR VAL VAL ALA GLN ALA SEQRES 13 A 268 LEU ASP GLN LEU ARG VAL ALA GLY VAL ASN GLY PRO TYR SEQRES 14 A 268 HIS LEU VAL LEU GLY GLU LYS ALA TYR THR SER ILE THR SEQRES 15 A 268 GLY GLY ASN GLU GLY GLY TYR PRO VAL PHE GLN HIS ILE SEQRES 16 A 268 ARG ARG LEU ILE ASP GLY GLU ILE VAL TRP ALA PRO ALA SEQRES 17 A 268 ILE GLU GLY GLY LEU LEU LEU THR THR ARG GLY GLY ASP SEQRES 18 A 268 PHE VAL MET ASP ILE GLY GLN ASP ILE SER ILE GLY TYR SEQRES 19 A 268 LEU ASN HIS THR GLY THR ASP VAL GLU LEU TYR LEU GLN SEQRES 20 A 268 GLU SER PHE THR PHE SER ALA LEU THR SER GLU ALA THR SEQRES 21 A 268 VAL THR LEU LEU PRO PRO GLU GLU SEQRES 1 B 351 MET GLY CYS PRO PHE SER GLN SER VAL SER GLN PRO VAL SEQRES 2 B 351 ASP GLU ARG LEU THR ARG ALA ALA ILE PHE LEU VAL VAL SEQRES 3 B 351 THR ILE ASN PRO GLY LYS ALA ALA GLU VAL ALA VAL ARG SEQRES 4 B 351 ALA HIS CYS SER ILE LEU SER SER LEU ILE ARG GLY VAL SEQRES 5 B 351 GLY PHE ARG ILE SER ASP GLY GLY LEU SER CYS VAL MET SEQRES 6 B 351 GLY VAL SER GLU GLY GLY TRP GLU ARG LEU PHE GLY ASP SEQRES 7 B 351 THR LYS PRO GLU TYR LEU HIS VAL PHE ARG GLU ILE ASN SEQRES 8 B 351 GLY VAL HIS HIS ALA PRO SER THR PRO GLY ASP LEU LEU SEQRES 9 B 351 TYR HIS ILE ARG ALA ALA ARG MET ASP LEU CYS PHE GLU SEQRES 10 B 351 LEU ALA SER ARG ILE LEU SER ASP LEU GLY ASN SER VAL SEQRES 11 B 351 SER VAL VAL ASP SER VAL GLN GLY PHE ARG TYR PHE ASP SEQRES 12 B 351 ASP ARG ASP LEU LEU GLY PHE VAL ASP GLY THR GLU ASN SEQRES 13 B 351 PRO VAL ALA GLN ALA ALA VAL ASP ALA THR LEU ILE GLY SEQRES 14 B 351 ASP GLU ASP MET VAL PHE ALA GLY GLY SER TYR VAL ILE SEQRES 15 B 351 VAL GLN LYS TYR LEU HIS ASP LEU ASP LYS TRP ASN ALA SEQRES 16 B 351 ILE PRO VAL GLU GLN GLN GLU LYS ILE ILE GLY ARG GLU SEQRES 17 B 351 LYS LEU SER ASP ILE GLU LEU ARG ASP ALA ASP LYS PRO SEQRES 18 B 351 SER TYR ALA HIS ASN VAL LEU THR SER ILE GLU GLU ASP SEQRES 19 B 351 GLY GLU ASP VAL ASP ILE LEU ARG ASP ASN MET PRO PHE SEQRES 20 B 351 GLY ASP PRO GLY LYS GLY GLU PHE GLY THR TYR PHE ILE SEQRES 21 B 351 GLY TYR SER ARG LYS PRO GLU ARG ILE GLU ARG MET LEU SEQRES 22 B 351 GLU ASN MET PHE ILE GLY ASN PRO PRO GLY ASN TYR ASP SEQRES 23 B 351 ARG ILE LEU ASP VAL SER ARG ALA ILE THR GLY THR LEU SEQRES 24 B 351 PHE PHE VAL PRO THR THR SER PHE LEU ASP SER ILE GLU SEQRES 25 B 351 PRO GLN SER ALA PRO GLY GLN GLN GLY ASP ASP VAL ILE SEQRES 26 B 351 ASN THR LEU ARG SER THR ALA ILE LYS GLY ASP ILE MET SEQRES 27 B 351 PRO GLY SER LEU ASN ILE GLY SER LEU LYS LYS GLU VAL HELIX 1 AA1 HIS A 5 ALA A 9 5 5 HELIX 2 AA2 SER A 12 LEU A 31 1 20 HELIX 3 AA3 ALA A 32 VAL A 36 5 5 HELIX 4 AA4 ARG A 86 GLY A 95 1 10 HELIX 5 AA5 TRP A 101 GLY A 122 1 22 HELIX 6 AA6 ILE A 131 SER A 135 5 5 HELIX 7 AA7 THR A 145 SER A 147 5 3 HELIX 8 AA8 ASP A 148 GLY A 164 1 17 HELIX 9 AA9 GLU A 175 GLY A 183 1 9 HELIX 10 AB1 GLY A 188 ILE A 199 1 12 SHEET 1 AA1 4 ASP A 38 VAL A 39 0 SHEET 2 AA1 4 PHE A 222 HIS A 237 1 O PHE A 222 N ASP A 38 SHEET 3 AA1 4 ASP A 241 ALA A 254 -1 O SER A 253 N VAL A 223 SHEET 4 AA1 4 VAL A 76 THR A 85 -1 N VAL A 76 O PHE A 250 SHEET 1 AA2 2 ALA A 49 LEU A 58 0 SHEET 2 AA2 2 ALA A 67 PRO A 74 -1 O LYS A 69 N ALA A 56 SHEET 1 AA3 5 LEU A 140 THR A 141 0 SHEET 2 AA3 5 THR A 260 LEU A 264 1 O THR A 262 N LEU A 140 SHEET 3 AA3 5 GLY A 212 THR A 216 -1 N GLY A 212 O LEU A 263 SHEET 4 AA3 5 TYR A 169 GLY A 174 -1 N HIS A 170 O LEU A 215 SHEET 5 AA3 5 ILE A 203 ALA A 206 1 O VAL A 204 N LEU A 171 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 658 0 0 10 11 0 0 6 2091 2 0 48 END