data_9E9Q # _entry.id 9E9Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9E9Q pdb_00009e9q 10.2210/pdb9e9q/pdb WWPDB D_1000289964 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-07-09 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9E9Q _pdbx_database_status.recvd_initial_deposition_date 2024-11-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SP cryoEM of same RNA' _pdbx_database_related.db_id EMD-47501 _pdbx_database_related.content_type 'other EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email adrian.ferre@gmail.com _pdbx_contact_author.name_first Adrian _pdbx_contact_author.name_last 'Ferre DAmare' _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4549-1619 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jones, C.P.' 1 0000-0001-7780-5278 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 31 _citation.language ? _citation.page_first 949 _citation.page_last 960 _citation.title 'Crystallographic and cryoEM analyses reveal SARS-CoV-2 SL5 is a mobile T-shaped four-way junction with deep pockets.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.080413.125 _citation.pdbx_database_id_PubMed 40527531 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jones, C.P.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (101-MER)' 32532.258 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;CUCGUCUAUCUUCUGCAGGCUGCUUACGGGAAACCGUGUUGCAGCCGAUCAUCAGCACAUCUAGGUUUCGUCCGGGUGUG ACCGAAAGGUAAGAUGGAGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;CUCGUCUAUCUUCUGCAGGCUGCUUACGGGAAACCGUGUUGCAGCCGAUCAUCAGCACAUCUAGGUUUCGUCCGGGUGUG ACCGAAAGGUAAGAUGGAGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 C n 1 4 G n 1 5 U n 1 6 C n 1 7 U n 1 8 A n 1 9 U n 1 10 C n 1 11 U n 1 12 U n 1 13 C n 1 14 U n 1 15 G n 1 16 C n 1 17 A n 1 18 G n 1 19 G n 1 20 C n 1 21 U n 1 22 G n 1 23 C n 1 24 U n 1 25 U n 1 26 A n 1 27 C n 1 28 G n 1 29 G n 1 30 G n 1 31 A n 1 32 A n 1 33 A n 1 34 C n 1 35 C n 1 36 G n 1 37 U n 1 38 G n 1 39 U n 1 40 U n 1 41 G n 1 42 C n 1 43 A n 1 44 G n 1 45 C n 1 46 C n 1 47 G n 1 48 A n 1 49 U n 1 50 C n 1 51 A n 1 52 U n 1 53 C n 1 54 A n 1 55 G n 1 56 C n 1 57 A n 1 58 C n 1 59 A n 1 60 U n 1 61 C n 1 62 U n 1 63 A n 1 64 G n 1 65 G n 1 66 U n 1 67 U n 1 68 U n 1 69 C n 1 70 G n 1 71 U n 1 72 C n 1 73 C n 1 74 G n 1 75 G n 1 76 G n 1 77 U n 1 78 G n 1 79 U n 1 80 G n 1 81 A n 1 82 C n 1 83 C n 1 84 G n 1 85 A n 1 86 A n 1 87 A n 1 88 G n 1 89 G n 1 90 U n 1 91 A n 1 92 A n 1 93 G n 1 94 A n 1 95 U n 1 96 G n 1 97 G n 1 98 A n 1 99 G n 1 100 A n 1 101 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 101 _entity_src_gen.gene_src_common_name 'SARS-CoV-2, 2019-nCoV, COVID-19 virus' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 U 9 9 9 U U A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 C 34 34 34 C C A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 U 37 37 37 U U A . n A 1 38 G 38 38 38 G G A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 A 43 43 43 A A A . n A 1 44 G 44 44 44 G G A . n A 1 45 C 45 45 45 C C A . n A 1 46 C 46 46 46 C C A . n A 1 47 G 47 47 47 G G A . n A 1 48 A 48 48 48 A A A . n A 1 49 U 49 49 49 U U A . n A 1 50 C 50 50 50 C C A . n A 1 51 A 51 51 51 A A A . n A 1 52 U 52 52 52 U U A . n A 1 53 C 53 53 53 C C A . n A 1 54 A 54 54 54 A A A . n A 1 55 G 55 55 55 G G A . n A 1 56 C 56 56 56 C C A . n A 1 57 A 57 57 57 A A A . n A 1 58 C 58 58 58 C C A . n A 1 59 A 59 59 59 A A A . n A 1 60 U 60 60 60 U U A . n A 1 61 C 61 61 61 C C A . n A 1 62 U 62 62 62 U U A . n A 1 63 A 63 63 63 A A A . n A 1 64 G 64 64 64 G G A . n A 1 65 G 65 65 65 G G A . n A 1 66 U 66 66 66 U U A . n A 1 67 U 67 67 67 U U A . n A 1 68 U 68 68 68 U U A . n A 1 69 C 69 69 69 C C A . n A 1 70 G 70 70 70 G G A . n A 1 71 U 71 71 71 U U A . n A 1 72 C 72 72 72 C C A . n A 1 73 C 73 73 73 C C A . n A 1 74 G 74 74 74 G G A . n A 1 75 G 75 75 75 G G A . n A 1 76 G 76 76 76 G G A . n A 1 77 U 77 77 77 U U A . n A 1 78 G 78 78 78 G G A . n A 1 79 U 79 79 79 U U A . n A 1 80 G 80 80 80 G G A . n A 1 81 A 81 81 81 A A A . n A 1 82 C 82 82 82 C C A . n A 1 83 C 83 83 83 C C A . n A 1 84 G 84 84 84 G G A . n A 1 85 A 85 85 85 A A A . n A 1 86 A 86 86 86 A A A . n A 1 87 A 87 87 87 A A A . n A 1 88 G 88 88 88 G G A . n A 1 89 G 89 89 89 G G A . n A 1 90 U 90 90 90 U U A . n A 1 91 A 91 91 91 A A A . n A 1 92 A 92 92 92 A A A . n A 1 93 G 93 93 93 G G A . n A 1 94 A 94 94 94 A A A . n A 1 95 U 95 95 95 U U A . n A 1 96 G 96 96 96 G G A . n A 1 97 G 97 97 97 G G A . n A 1 98 A 98 98 98 A A A . n A 1 99 G 99 99 99 G G A . n A 1 100 A 100 100 100 A A A . n A 1 101 G 101 101 101 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 1 MG MO6 A . C 2 MG 1 202 2 MG MO6 A . D 2 MG 1 203 3 MG MO6 A . E 2 MG 1 204 4 MG MO6 A . F 2 MG 1 205 5 MG MO6 A . G 3 HOH 1 301 2 HOH MO6 A . G 3 HOH 2 302 1 HOH HOH A . G 3 HOH 3 303 1 HOH MO6 A . G 3 HOH 4 304 3 HOH MO6 A . G 3 HOH 5 305 5 HOH MO6 A . G 3 HOH 6 306 4 HOH MO6 A . G 3 HOH 7 307 2 HOH MO6 A . G 3 HOH 8 308 1 HOH MO6 A . G 3 HOH 9 309 3 HOH MO6 A . G 3 HOH 10 310 5 HOH MO6 A . G 3 HOH 11 311 4 HOH MO6 A . G 3 HOH 12 312 5 HOH MO6 A . G 3 HOH 13 313 3 HOH MO6 A . G 3 HOH 14 314 1 HOH MO6 A . G 3 HOH 15 315 3 HOH MO6 A . G 3 HOH 16 316 5 HOH MO6 A . G 3 HOH 17 317 4 HOH MO6 A . G 3 HOH 18 318 1 HOH MO6 A . G 3 HOH 19 319 4 HOH MO6 A . G 3 HOH 20 320 1 HOH MO6 A . G 3 HOH 21 321 3 HOH MO6 A . G 3 HOH 22 322 3 HOH MO6 A . G 3 HOH 23 323 2 HOH MO6 A . G 3 HOH 24 324 2 HOH MO6 A . G 3 HOH 25 325 4 HOH MO6 A . G 3 HOH 26 326 2 HOH MO6 A . G 3 HOH 27 327 5 HOH MO6 A . G 3 HOH 28 328 5 HOH MO6 A . G 3 HOH 29 329 1 HOH MO6 A . G 3 HOH 30 330 2 HOH MO6 A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 67 ? N1 ? A U 67 N1 2 1 Y 1 A U 67 ? C2 ? A U 67 C2 3 1 Y 1 A U 67 ? O2 ? A U 67 O2 4 1 Y 1 A U 67 ? N3 ? A U 67 N3 5 1 Y 1 A U 67 ? C4 ? A U 67 C4 6 1 Y 1 A U 67 ? O4 ? A U 67 O4 7 1 Y 1 A U 67 ? C5 ? A U 67 C5 8 1 Y 1 A U 67 ? C6 ? A U 67 C6 9 1 Y 1 A U 71 ? C2 ? A U 71 C2 10 1 Y 1 A U 71 ? O2 ? A U 71 O2 11 1 Y 1 A U 71 ? N3 ? A U 71 N3 12 1 Y 1 A U 71 ? C4 ? A U 71 C4 13 1 Y 1 A U 71 ? O4 ? A U 71 O4 14 1 Y 1 A U 71 ? C5 ? A U 71 C5 15 1 Y 1 A U 71 ? C6 ? A U 71 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 9E9Q _cell.details ? _cell.formula_units_Z ? _cell.length_a 96.717 _cell.length_a_esd ? _cell.length_b 96.717 _cell.length_b_esd ? _cell.length_c 114.823 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9E9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9E9Q _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.77 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.2-1.4 M sodium citrate, 0.1 M HEPES-NaOH, pH 6.5-7.5 reservoir mixed in ratios of 1:2, 1:1, or 2:1 with folded RNA solution containing 25 mM HEPES-KOH, pH 7.4, 150 mM KCl, 10 mM MgCl2 ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-04-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.59980 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.59980 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9E9Q _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.33 _reflns.d_resolution_low 47.36 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17556 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.78 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.35 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half .997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs .06898 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.33 _reflns_shell.d_res_low 3.449 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.67 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1721 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half .246 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 3.428 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9E9Q _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.33 _refine.ls_d_res_low 47.36 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17539 _refine.ls_number_reflns_R_free 1781 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.81 _refine.ls_percent_reflns_R_free 10.15 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1626 _refine.ls_R_factor_R_free 0.2043 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1580 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.81 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.54 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2136 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 2166 _refine_hist.d_res_high 3.33 _refine_hist.d_res_low 47.36 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 2416 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.357 ? 3790 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.537 ? 1206 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.064 ? 503 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 99 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.33 3.42 . . 159 1175 99.00 . . . . 0.3442 . . . . . . . . . . . 0.3428 'X-RAY DIFFRACTION' 3.42 3.52 . . 137 1182 100.00 . . . . 0.3104 . . . . . . . . . . . 0.3476 'X-RAY DIFFRACTION' 3.52 3.63 . . 132 1241 100.00 . . . . 0.2690 . . . . . . . . . . . 0.3179 'X-RAY DIFFRACTION' 3.64 3.76 . . 139 1206 100.00 . . . . 0.2499 . . . . . . . . . . . 0.2386 'X-RAY DIFFRACTION' 3.76 3.91 . . 131 1197 100.00 . . . . 0.2169 . . . . . . . . . . . 0.2529 'X-RAY DIFFRACTION' 3.92 4.09 . . 144 1231 100.00 . . . . 0.2065 . . . . . . . . . . . 0.2841 'X-RAY DIFFRACTION' 4.09 4.31 . . 144 1206 100.00 . . . . 0.2008 . . . . . . . . . . . 0.2710 'X-RAY DIFFRACTION' 4.31 4.58 . . 122 1252 100.00 . . . . 0.2178 . . . . . . . . . . . 0.2329 'X-RAY DIFFRACTION' 4.58 4.93 . . 132 1200 100.00 . . . . 0.2052 . . . . . . . . . . . 0.2157 'X-RAY DIFFRACTION' 4.94 5.43 . . 138 1203 100.00 . . . . 0.1611 . . . . . . . . . . . 0.2482 'X-RAY DIFFRACTION' 5.43 6.21 . . 136 1233 100.00 . . . . 0.1707 . . . . . . . . . . . 0.2399 'X-RAY DIFFRACTION' 6.21 7.81 . . 130 1221 100.00 . . . . 0.1388 . . . . . . . . . . . 0.1892 'X-RAY DIFFRACTION' 7.84 47.36 . . 137 1211 99.00 . . . . 0.1171 . . . . . . . . . . . 0.1550 # _struct.entry_id 9E9Q _struct.title 'SARS-CoV-2 SL5 crystal structure native' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9E9Q _struct_keywords.text ;UTR, virus, coronavirus, 5' UTR, untranslated region, translation, control, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code ON995088.1 _struct_ref.pdbx_db_accession 2272523031 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CUCGUCUAUCUUCUGCAGGCUGCUUACGGUUUCAUCCGUGUUGCAGCCGAUCAUCAGCACAUCUAGGUUUCGUCCGGGUG UGACCGAAAGGUAAGAUGGAGAG ; _struct_ref.pdbx_align_begin 129 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9E9Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2272523031 _struct_ref_seq.db_align_beg 129 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 231 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9E9Q ? A ? ? GB 2272523031 U 158 deletion ? 1 1 9E9Q ? A ? ? GB 2272523031 U 159 deletion ? 2 1 9E9Q G A 30 ? GB 2272523031 U 160 conflict 30 3 1 9E9Q A A 31 ? GB 2272523031 C 161 conflict 31 4 1 9E9Q A A 33 ? GB 2272523031 U 163 conflict 33 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 50 O2 ? ? ? 1_555 E MG . MG ? ? A C 50 A MG 204 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 303 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 308 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 314 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 318 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 320 1_555 ? ? ? ? ? ? ? 2.196 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 329 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 301 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 307 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 323 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 324 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 326 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 330 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 304 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 309 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 313 1_555 ? ? ? ? ? ? ? 2.196 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 315 1_555 ? ? ? ? ? ? ? 2.203 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 321 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc19 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 322 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 204 A HOH 306 2_654 ? ? ? ? ? ? ? 2.187 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 204 A HOH 311 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 204 A HOH 317 2_654 ? ? ? ? ? ? ? 2.187 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 204 A HOH 319 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 204 A HOH 325 2_654 ? ? ? ? ? ? ? 2.185 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 205 A HOH 305 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 205 A HOH 310 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 205 A HOH 312 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc28 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 205 A HOH 316 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc29 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 205 A HOH 327 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc30 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 205 A HOH 328 1_555 ? ? ? ? ? ? ? 2.192 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 101 N1 ? ? A C 1 A G 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 101 O6 ? ? A C 1 A G 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 101 N2 ? ? A C 1 A G 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 100 N1 ? ? A U 2 A A 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 100 N6 ? ? A U 2 A A 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 99 N1 ? ? A C 3 A G 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 99 O6 ? ? A C 3 A G 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 99 N2 ? ? A C 3 A G 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 98 N1 ? ? A U 5 A A 98 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 97 N1 ? ? A C 6 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 97 O6 ? ? A C 6 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 97 N2 ? ? A C 6 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 96 O6 ? ? A U 7 A G 96 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 96 N1 ? ? A U 7 A G 96 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 95 N3 ? ? A A 8 A U 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 95 O4 ? ? A A 8 A U 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 94 N1 ? ? A U 9 A A 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 94 N6 ? ? A U 9 A A 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 93 N1 ? ? A C 10 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 93 O6 ? ? A C 10 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 93 N2 ? ? A C 10 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 92 N1 ? ? A U 11 A A 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 92 N6 ? ? A U 11 A A 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 81 N7 ? ? A U 12 A A 81 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog25 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 81 N6 ? ? A U 12 A A 81 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog26 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 91 N1 ? ? A U 12 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 91 N6 ? ? A U 12 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 13 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 13 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 13 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 54 N1 ? ? A U 14 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 54 N6 ? ? A U 14 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 53 N3 ? ? A G 15 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 15 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 53 N4 ? ? A G 15 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 17 N6 ? ? ? 1_555 A G 47 N3 ? ? A A 17 A G 47 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog37 hydrog ? ? A A 17 N7 ? ? ? 1_555 A G 47 N2 ? ? A A 17 A G 47 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 18 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 18 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 18 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 19 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 19 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 19 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 20 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 20 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 20 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 43 N1 ? ? A U 21 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 43 N6 ? ? A U 21 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 22 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 22 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 22 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 23 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 23 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 23 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 24 N3 ? ? ? 1_555 A U 39 O2 ? ? A U 24 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog56 hydrog ? ? A U 24 O4 ? ? ? 1_555 A U 39 N3 ? ? A U 24 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog57 hydrog ? ? A U 25 O4 ? ? ? 1_555 A G 38 N1 ? ? A U 25 A G 38 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog58 hydrog ? ? A A 26 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 26 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 26 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 26 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 27 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 27 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 27 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 28 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 28 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 28 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 29 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 29 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 29 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 30 N2 ? ? ? 1_555 A A 33 N7 ? ? A G 30 A A 33 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog70 hydrog ? ? A U 39 N3 ? ? ? 1_555 A G 41 O6 ? ? A U 39 A G 41 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog71 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 57 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 57 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 58 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 58 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 58 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 59 N1 ? ? ? 1_555 A U 77 N3 ? ? A A 59 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 59 N6 ? ? ? 1_555 A U 77 O4 ? ? A A 59 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 60 N3 ? ? ? 1_555 A G 76 O6 ? ? A U 60 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? A U 60 O2 ? ? ? 1_555 A G 76 N1 ? ? A U 60 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? A C 61 N3 ? ? ? 1_555 A G 75 N1 ? ? A C 61 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 61 N4 ? ? ? 1_555 A G 75 O6 ? ? A C 61 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 61 O2 ? ? ? 1_555 A G 75 N2 ? ? A C 61 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 62 N3 ? ? ? 1_555 A G 74 O6 ? ? A U 62 A G 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog87 hydrog ? ? A U 62 O2 ? ? ? 1_555 A G 74 N1 ? ? A U 62 A G 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog88 hydrog ? ? A A 63 N7 ? ? ? 1_555 A G 74 N2 ? ? A A 63 A G 74 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog89 hydrog ? ? A G 64 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 64 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 64 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 64 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 64 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 64 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 65 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 65 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 65 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 65 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 65 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 65 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A U 66 O4 ? ? ? 1_555 A C 69 N4 ? ? A U 66 A C 69 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog96 hydrog ? ? A U 66 N3 ? ? ? 1_555 A G 70 O6 ? ? A U 66 A G 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog97 hydrog ? ? A U 66 O2 ? ? ? 1_555 A G 70 N1 ? ? A U 66 A G 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog98 hydrog ? ? A A 81 N1 ? ? ? 1_555 A U 90 N3 ? ? A A 81 A U 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A A 81 N6 ? ? ? 1_555 A U 90 O4 ? ? A A 81 A U 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 82 N3 ? ? ? 1_555 A G 89 N1 ? ? A C 82 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 82 N4 ? ? ? 1_555 A G 89 O6 ? ? A C 82 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 82 O2 ? ? ? 1_555 A G 89 N2 ? ? A C 82 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 83 N3 ? ? ? 1_555 A G 88 N1 ? ? A C 83 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 83 N4 ? ? ? 1_555 A G 88 O6 ? ? A C 83 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 83 O2 ? ? ? 1_555 A G 88 N2 ? ? A C 83 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 84 N2 ? ? ? 1_555 A A 87 N7 ? ? A G 84 A A 87 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A C 50 ? A C 50 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 306 ? 2_654 83.0 ? 2 O2 ? A C 50 ? A C 50 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 311 ? 1_555 73.6 ? 3 O ? G HOH . ? A HOH 306 ? 2_654 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 311 ? 1_555 89.4 ? 4 O2 ? A C 50 ? A C 50 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 317 ? 2_654 109.1 ? 5 O ? G HOH . ? A HOH 306 ? 2_654 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 317 ? 2_654 91.4 ? 6 O ? G HOH . ? A HOH 311 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 317 ? 2_654 177.3 ? 7 O2 ? A C 50 ? A C 50 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 94.0 ? 8 O ? G HOH . ? A HOH 306 ? 2_654 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 176.8 ? 9 O ? G HOH . ? A HOH 311 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 91.0 ? 10 O ? G HOH . ? A HOH 317 ? 2_654 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 88.4 ? 11 O2 ? A C 50 ? A C 50 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 325 ? 2_654 162.2 ? 12 O ? G HOH . ? A HOH 306 ? 2_654 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 325 ? 2_654 91.7 ? 13 O ? G HOH . ? A HOH 311 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 325 ? 2_654 89.5 ? 14 O ? G HOH . ? A HOH 317 ? 2_654 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 325 ? 2_654 87.9 ? 15 O ? G HOH . ? A HOH 319 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O ? G HOH . ? A HOH 325 ? 2_654 91.5 ? 16 O ? G HOH . ? A HOH 303 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 308 ? 1_555 88.2 ? 17 O ? G HOH . ? A HOH 303 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 314 ? 1_555 91.4 ? 18 O ? G HOH . ? A HOH 308 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 314 ? 1_555 91.9 ? 19 O ? G HOH . ? A HOH 303 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 318 ? 1_555 178.4 ? 20 O ? G HOH . ? A HOH 308 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 318 ? 1_555 90.5 ? 21 O ? G HOH . ? A HOH 314 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 318 ? 1_555 87.8 ? 22 O ? G HOH . ? A HOH 303 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 320 ? 1_555 91.4 ? 23 O ? G HOH . ? A HOH 308 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 320 ? 1_555 178.3 ? 24 O ? G HOH . ? A HOH 314 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 320 ? 1_555 89.8 ? 25 O ? G HOH . ? A HOH 318 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 320 ? 1_555 90.0 ? 26 O ? G HOH . ? A HOH 303 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 329 ? 1_555 88.9 ? 27 O ? G HOH . ? A HOH 308 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 329 ? 1_555 88.1 ? 28 O ? G HOH . ? A HOH 314 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 329 ? 1_555 179.7 ? 29 O ? G HOH . ? A HOH 318 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 329 ? 1_555 92.0 ? 30 O ? G HOH . ? A HOH 320 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 329 ? 1_555 90.2 ? 31 O ? G HOH . ? A HOH 301 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 307 ? 1_555 179.5 ? 32 O ? G HOH . ? A HOH 301 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 323 ? 1_555 89.3 ? 33 O ? G HOH . ? A HOH 307 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 323 ? 1_555 90.3 ? 34 O ? G HOH . ? A HOH 301 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 324 ? 1_555 89.2 ? 35 O ? G HOH . ? A HOH 307 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 324 ? 1_555 90.7 ? 36 O ? G HOH . ? A HOH 323 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 324 ? 1_555 89.3 ? 37 O ? G HOH . ? A HOH 301 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 326 ? 1_555 89.9 ? 38 O ? G HOH . ? A HOH 307 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 326 ? 1_555 90.2 ? 39 O ? G HOH . ? A HOH 323 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 326 ? 1_555 90.0 ? 40 O ? G HOH . ? A HOH 324 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 326 ? 1_555 178.9 ? 41 O ? G HOH . ? A HOH 301 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 330 ? 1_555 90.9 ? 42 O ? G HOH . ? A HOH 307 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 330 ? 1_555 89.5 ? 43 O ? G HOH . ? A HOH 323 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 330 ? 1_555 178.7 ? 44 O ? G HOH . ? A HOH 324 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 330 ? 1_555 91.9 ? 45 O ? G HOH . ? A HOH 326 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 330 ? 1_555 88.7 ? 46 O ? G HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 309 ? 1_555 87.9 ? 47 O ? G HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 313 ? 1_555 91.9 ? 48 O ? G HOH . ? A HOH 309 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 313 ? 1_555 177.7 ? 49 O ? G HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 90.2 ? 50 O ? G HOH . ? A HOH 309 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 88.2 ? 51 O ? G HOH . ? A HOH 313 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 94.1 ? 52 O ? G HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 321 ? 1_555 88.8 ? 53 O ? G HOH . ? A HOH 309 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 321 ? 1_555 91.3 ? 54 O ? G HOH . ? A HOH 313 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 321 ? 1_555 86.4 ? 55 O ? G HOH . ? A HOH 315 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 321 ? 1_555 178.8 ? 56 O ? G HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 322 ? 1_555 178.3 ? 57 O ? G HOH . ? A HOH 309 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 322 ? 1_555 91.4 ? 58 O ? G HOH . ? A HOH 313 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 322 ? 1_555 88.9 ? 59 O ? G HOH . ? A HOH 315 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 322 ? 1_555 88.3 ? 60 O ? G HOH . ? A HOH 321 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 322 ? 1_555 92.8 ? 61 O ? G HOH . ? A HOH 305 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 310 ? 1_555 90.0 ? 62 O ? G HOH . ? A HOH 305 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 312 ? 1_555 88.5 ? 63 O ? G HOH . ? A HOH 310 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 312 ? 1_555 89.0 ? 64 O ? G HOH . ? A HOH 305 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 316 ? 1_555 91.3 ? 65 O ? G HOH . ? A HOH 310 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 316 ? 1_555 90.1 ? 66 O ? G HOH . ? A HOH 312 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 316 ? 1_555 179.0 ? 67 O ? G HOH . ? A HOH 305 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 327 ? 1_555 89.8 ? 68 O ? G HOH . ? A HOH 310 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 327 ? 1_555 178.4 ? 69 O ? G HOH . ? A HOH 312 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 327 ? 1_555 89.4 ? 70 O ? G HOH . ? A HOH 316 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 327 ? 1_555 91.5 ? 71 O ? G HOH . ? A HOH 305 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 328 ? 1_555 177.7 ? 72 O ? G HOH . ? A HOH 310 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 328 ? 1_555 92.0 ? 73 O ? G HOH . ? A HOH 312 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 328 ? 1_555 90.4 ? 74 O ? G HOH . ? A HOH 316 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 328 ? 1_555 89.9 ? 75 O ? G HOH . ? A HOH 327 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O ? G HOH . ? A HOH 328 ? 1_555 88.2 ? # _pdbx_entry_details.entry_id 9E9Q _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 109.87 106.40 3.47 0.40 N 2 1 C8 A G 18 ? ? N9 A G 18 ? ? C4 A G 18 ? ? 108.93 106.40 2.53 0.40 N 3 1 N7 A G 19 ? ? C8 A G 19 ? ? N9 A G 19 ? ? 109.91 113.10 -3.19 0.50 N 4 1 C8 A G 19 ? ? N9 A G 19 ? ? C4 A G 19 ? ? 110.00 106.40 3.60 0.40 N 5 1 "O4'" A U 49 ? ? "C1'" A U 49 ? ? N1 A U 49 ? ? 116.38 108.50 7.88 0.70 N 6 1 C6 A U 49 ? ? N1 A U 49 ? ? C2 A U 49 ? ? 115.52 121.00 -5.48 0.60 N 7 1 N3 A U 49 ? ? C2 A U 49 ? ? O2 A U 49 ? ? 115.17 122.20 -7.03 0.70 N 8 1 C5 A U 49 ? ? C4 A U 49 ? ? O4 A U 49 ? ? 130.44 125.90 4.54 0.60 N 9 1 "O5'" A C 50 ? ? P A C 50 ? ? OP1 A C 50 ? ? 99.72 105.70 -5.98 0.90 N 10 1 C6 A C 61 ? ? N1 A C 61 ? ? C2 A C 61 ? ? 117.25 120.30 -3.05 0.40 N 11 1 C5 A C 61 ? ? C6 A C 61 ? ? N1 A C 61 ? ? 125.41 121.00 4.41 0.50 N 12 1 C2 A C 61 ? ? N1 A C 61 ? ? "C1'" A C 61 ? ? 125.64 118.80 6.84 1.10 N 13 1 C4 A G 65 ? ? C5 A G 65 ? ? N7 A G 65 ? ? 113.29 110.80 2.49 0.40 N 14 1 C8 A G 78 ? ? N9 A G 78 ? ? C4 A G 78 ? ? 109.21 106.40 2.81 0.40 N 15 1 C6 A C 82 ? ? N1 A C 82 ? ? C2 A C 82 ? ? 123.98 120.30 3.68 0.40 N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 30.9803 8.9858 9.6199 2.1795 ? 0.1186 ? -0.1594 ? 1.6929 ? 0.0266 ? 1.9941 ? 0.1723 ? -0.3869 ? 0.0606 ? 3.0288 ? 3.2736 ? 4.7482 ? -0.0334 ? 0.2183 ? 0.1122 ? -0.2856 ? -0.7205 ? 0.8729 ? -0.1320 ? -1.1811 ? 0.6986 ? 2 'X-RAY DIFFRACTION' ? refined 40.5605 5.1401 2.5949 2.5338 ? 0.0041 ? -0.1734 ? 1.6523 ? 0.2689 ? 2.0820 ? 2.3273 ? 3.6512 ? 1.4793 ? 7.8104 ? 5.0254 ? 1.7840 ? -0.1883 ? 0.1318 ? 0.1254 ? -0.8900 ? -0.3139 ? 0.2882 ? -0.7065 ? -0.2493 ? 0.4996 ? 3 'X-RAY DIFFRACTION' ? refined 46.4149 20.9630 26.7317 2.2357 ? -0.0461 ? -0.1815 ? 1.2827 ? 0.0892 ? 1.7952 ? 7.3946 ? 1.4728 ? -2.5218 ? 1.7927 ? 0.6710 ? 6.5377 ? 0.1369 ? -0.1467 ? 1.3359 ? -0.0509 ? -0.2274 ? 0.3712 ? -0.6867 ? 0.5302 ? 0.0067 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 30 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 31 through 60 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 61 through 101 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9E9Q 'double helix' 9E9Q 'a-form double helix' 9E9Q tetraloop 9E9Q 'bulge loop' 9E9Q 'mismatched base pair' 9E9Q 'internal loop' 9E9Q 'triple helix' 9E9Q 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 101 1_555 0.084 -0.178 0.527 10.464 -8.243 -4.027 1 A_C1:G101_A A 1 ? A 101 ? 19 1 1 A U 2 1_555 A A 100 1_555 -0.343 -0.121 0.323 -0.917 -3.826 -1.297 2 A_U2:A100_A A 2 ? A 100 ? 20 1 1 A C 3 1_555 A G 99 1_555 0.089 -0.041 0.249 5.888 -4.824 -4.157 3 A_C3:G99_A A 3 ? A 99 ? 19 1 1 A U 5 1_555 A A 98 1_555 -0.112 0.348 0.806 -3.178 -11.642 10.373 4 A_U5:A98_A A 5 ? A 98 ? ? 1 1 A C 6 1_555 A G 97 1_555 0.169 -0.077 0.097 0.418 -7.702 4.060 5 A_C6:G97_A A 6 ? A 97 ? 19 1 1 A U 7 1_555 A G 96 1_555 1.152 -0.254 0.109 3.884 -8.769 3.037 6 A_U7:G96_A A 7 ? A 96 ? 28 1 1 A A 8 1_555 A U 95 1_555 -0.380 -0.067 0.739 2.108 -6.573 1.477 7 A_A8:U95_A A 8 ? A 95 ? 20 1 1 A U 9 1_555 A A 94 1_555 -0.183 -0.072 0.476 -0.985 -12.376 -9.485 8 A_U9:A94_A A 9 ? A 94 ? 20 1 1 A C 10 1_555 A G 93 1_555 0.091 -0.137 0.554 -3.112 -11.402 -0.435 9 A_C10:G93_A A 10 ? A 93 ? 19 1 1 A U 11 1_555 A A 92 1_555 -0.124 0.007 0.630 -8.688 -7.733 -1.801 10 A_U11:A92_A A 11 ? A 92 ? 20 1 1 A U 12 1_555 A A 91 1_555 -0.359 0.038 1.039 -4.816 0.764 -2.756 11 A_U12:A91_A A 12 ? A 91 ? 20 1 1 A A 81 1_555 A U 90 1_555 0.226 -0.108 -0.088 8.468 1.754 0.164 12 A_A81:U90_A A 81 ? A 90 ? 20 1 1 A C 82 1_555 A G 89 1_555 0.138 -0.247 -0.242 4.539 -4.888 -4.016 13 A_C82:G89_A A 82 ? A 89 ? 19 1 1 A C 83 1_555 A G 88 1_555 0.169 -0.184 -0.136 -2.040 5.924 0.459 14 A_C83:G88_A A 83 ? A 88 ? 19 1 1 A G 84 1_555 A A 87 1_555 6.839 -4.992 0.742 13.972 4.336 -20.849 15 A_G84:A87_A A 84 ? A 87 ? ? ? 1 A A 33 1_555 A G 30 1_555 -8.126 -4.980 0.831 -12.664 -9.405 -31.978 16 A_A33:G30_A A 33 ? A 30 ? ? ? 1 A C 34 1_555 A G 29 1_555 0.071 -0.212 -0.297 4.061 2.428 2.594 17 A_C34:G29_A A 34 ? A 29 ? 19 1 1 A C 35 1_555 A G 28 1_555 0.249 -0.181 0.245 4.646 -4.609 1.803 18 A_C35:G28_A A 35 ? A 28 ? 19 1 1 A G 36 1_555 A C 27 1_555 -0.007 -0.166 -0.667 -9.018 -2.306 -1.171 19 A_G36:C27_A A 36 ? A 27 ? 19 1 1 A U 37 1_555 A A 26 1_555 0.183 -0.203 -0.325 -5.032 3.214 2.133 20 A_U37:A26_A A 37 ? A 26 ? 20 1 1 A G 38 1_555 A U 25 1_555 2.894 0.616 -0.320 1.627 -2.065 5.855 21 A_G38:U25_A A 38 ? A 25 ? ? 1 1 A U 39 1_555 A U 24 1_555 1.988 -2.000 0.613 0.540 -7.440 1.235 22 A_U39:U24_A A 39 ? A 24 ? 16 1 1 A G 41 1_555 A C 23 1_555 -0.288 -0.237 -0.384 0.968 -2.792 3.240 23 A_G41:C23_A A 41 ? A 23 ? 19 1 1 A C 42 1_555 A G 22 1_555 0.315 -0.202 -0.096 -2.464 -4.635 1.960 24 A_C42:G22_A A 42 ? A 22 ? 19 1 1 A A 43 1_555 A U 21 1_555 0.014 -0.036 0.077 0.364 -5.586 -4.903 25 A_A43:U21_A A 43 ? A 21 ? 20 1 1 A G 44 1_555 A C 20 1_555 -0.180 -0.188 0.051 3.539 0.088 0.298 26 A_G44:C20_A A 44 ? A 20 ? 19 1 1 A C 45 1_555 A G 19 1_555 0.275 -0.409 -0.008 5.011 -1.672 -1.592 27 A_C45:G19_A A 45 ? A 19 ? 19 1 1 A C 46 1_555 A G 18 1_555 0.368 -0.257 -0.187 3.829 -6.532 1.103 28 A_C46:G18_A A 46 ? A 18 ? 19 1 1 A G 47 1_555 A A 17 1_555 6.938 -3.839 -0.465 -2.888 -4.753 0.864 29 A_G47:A17_A A 47 ? A 17 ? 11 9 1 A C 53 1_555 A G 15 1_555 0.113 -0.167 0.093 -0.354 8.470 -1.677 30 A_C53:G15_A A 53 ? A 15 ? 19 1 1 A A 54 1_555 A U 14 1_555 0.139 -0.139 0.419 5.396 -0.436 0.881 31 A_A54:U14_A A 54 ? A 14 ? 20 1 1 A G 55 1_555 A C 13 1_555 0.009 -0.054 0.384 10.368 -5.309 3.490 32 A_G55:C13_A A 55 ? A 13 ? 19 1 1 A C 56 1_555 A G 80 1_555 0.107 -0.145 0.238 -5.673 -3.848 -3.338 33 A_C56:G80_A A 56 ? A 80 ? 19 1 1 A A 57 1_555 A U 79 1_555 0.025 -0.238 0.922 9.086 -6.121 -6.926 34 A_A57:U79_A A 57 ? A 79 ? 20 1 1 A C 58 1_555 A G 78 1_555 0.145 -0.208 0.855 2.433 -9.839 -2.372 35 A_C58:G78_A A 58 ? A 78 ? 19 1 1 A A 59 1_555 A U 77 1_555 -0.002 -0.047 0.140 -2.486 -13.226 0.012 36 A_A59:U77_A A 59 ? A 77 ? 20 1 1 A U 60 1_555 A G 76 1_555 2.135 -0.478 0.245 -5.915 -8.361 3.162 37 A_U60:G76_A A 60 ? A 76 ? 28 1 1 A C 61 1_555 A G 75 1_555 -0.006 -0.176 0.314 0.410 1.048 -0.695 38 A_C61:G75_A A 61 ? A 75 ? 19 1 1 A U 62 1_555 A G 74 1_555 1.803 -0.676 0.686 -4.980 1.894 -7.575 39 A_U62:G74_A A 62 ? A 74 ? 28 1 1 A G 64 1_555 A C 73 1_555 -0.191 -0.219 0.293 -7.491 -17.867 -3.559 40 A_G64:C73_A A 64 ? A 73 ? 19 1 1 A G 65 1_555 A C 72 1_555 -0.248 -0.303 0.187 -14.195 -16.960 -7.579 41 A_G65:C72_A A 65 ? A 72 ? 19 1 1 A U 66 1_555 A G 70 1_555 1.761 -1.624 2.130 -12.155 -10.222 -20.681 42 A_U66:G70_A A 66 ? A 70 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 101 1_555 A U 2 1_555 A A 100 1_555 -0.885 -2.218 3.314 -2.430 2.711 32.987 -4.337 1.144 3.182 4.756 4.263 33.182 1 AA_C1U2:A100G101_AA A 1 ? A 101 ? A 2 ? A 100 ? 1 A U 2 1_555 A A 100 1_555 A C 3 1_555 A G 99 1_555 -0.422 -1.320 3.280 4.883 10.275 32.053 -3.798 1.453 2.652 17.918 -8.515 33.962 2 AA_U2C3:G99A100_AA A 2 ? A 100 ? A 3 ? A 99 ? 1 A C 3 1_555 A G 99 1_555 A U 5 1_555 A A 98 1_555 0.578 -1.407 3.478 -0.329 5.491 38.665 -2.790 -0.907 3.251 8.242 0.494 39.039 3 AA_C3U5:A98G99_AA A 3 ? A 99 ? A 5 ? A 98 ? 1 A U 5 1_555 A A 98 1_555 A C 6 1_555 A G 97 1_555 -0.341 -1.705 3.197 4.592 -4.150 33.106 -2.266 1.339 3.304 -7.204 -7.972 33.664 4 AA_U5C6:G97A98_AA A 5 ? A 98 ? A 6 ? A 97 ? 1 A C 6 1_555 A G 97 1_555 A U 7 1_555 A G 96 1_555 0.066 -1.445 3.169 0.548 4.691 29.972 -3.644 -0.022 2.915 9.000 -1.052 30.333 5 AA_C6U7:G96G97_AA A 6 ? A 97 ? A 7 ? A 96 ? 1 A U 7 1_555 A G 96 1_555 A A 8 1_555 A U 95 1_555 -0.947 -1.410 3.030 -6.517 9.274 34.938 -3.385 0.701 2.709 14.967 10.517 36.676 6 AA_U7A8:U95G96_AA A 7 ? A 96 ? A 8 ? A 95 ? 1 A A 8 1_555 A U 95 1_555 A U 9 1_555 A A 94 1_555 -1.333 -1.508 3.249 -2.821 5.828 33.529 -3.467 1.837 3.050 9.987 4.834 34.131 7 AA_A8U9:A94U95_AA A 8 ? A 95 ? A 9 ? A 94 ? 1 A U 9 1_555 A A 94 1_555 A C 10 1_555 A G 93 1_555 0.207 -1.708 3.221 -2.562 3.359 30.917 -3.787 -0.851 2.997 6.265 4.778 31.197 8 AA_U9C10:G93A94_AA A 9 ? A 94 ? A 10 ? A 93 ? 1 A C 10 1_555 A G 93 1_555 A U 11 1_555 A A 92 1_555 -0.114 -1.503 3.251 -2.807 8.332 34.601 -3.594 -0.198 2.826 13.736 4.628 35.667 9 AA_C10U11:A92G93_AA A 10 ? A 93 ? A 11 ? A 92 ? 1 A U 11 1_555 A A 92 1_555 A U 12 1_555 A A 91 1_555 -0.291 -0.976 3.245 -4.496 6.560 30.254 -3.014 -0.285 2.984 12.304 8.432 31.258 10 AA_U11U12:A91A92_AA A 11 ? A 92 ? A 12 ? A 91 ? 1 A U 12 1_555 A A 91 1_555 A A 81 1_555 A U 90 1_555 -0.658 -1.762 2.511 3.574 10.215 40.166 -3.240 1.192 1.961 14.556 -5.094 41.541 11 AA_U12A81:U90A91_AA A 12 ? A 91 ? A 81 ? A 90 ? 1 A A 81 1_555 A U 90 1_555 A C 82 1_555 A G 89 1_555 -0.938 -2.245 3.340 -4.439 1.618 31.458 -4.399 0.880 3.321 2.963 8.129 31.802 12 AA_A81C82:G89U90_AA A 81 ? A 90 ? A 82 ? A 89 ? 1 A C 82 1_555 A G 89 1_555 A C 83 1_555 A G 88 1_555 -0.141 -2.463 3.370 -2.161 6.684 32.886 -5.308 -0.094 2.832 11.642 3.764 33.608 13 AA_C82C83:G88G89_AA A 82 ? A 89 ? A 83 ? A 88 ? 1 A C 83 1_555 A G 88 1_555 A G 84 1_555 A A 87 1_555 -1.604 -1.451 2.902 -2.488 6.517 50.040 -2.104 1.727 2.776 7.662 2.925 50.492 14 AA_C83G84:A87G88_AA A 83 ? A 88 ? A 84 ? A 87 ? 1 A A 33 1_555 A G 30 1_555 A C 34 1_555 A G 29 1_555 3.325 -1.534 2.792 2.093 8.625 53.301 -2.137 -3.555 2.651 9.539 -2.315 53.982 15 AA_A33C34:G29G30_AA A 33 ? A 30 ? A 34 ? A 29 ? 1 A C 34 1_555 A G 29 1_555 A C 35 1_555 A G 28 1_555 0.110 -1.750 3.289 -1.210 5.974 29.927 -4.456 -0.439 2.887 11.419 2.314 30.527 16 AA_C34C35:G28G29_AA A 34 ? A 29 ? A 35 ? A 28 ? 1 A C 35 1_555 A G 28 1_555 A G 36 1_555 A C 27 1_555 0.611 -2.032 3.628 7.123 12.008 30.126 -5.623 0.150 2.715 21.698 -12.871 33.136 17 AA_C35G36:C27G28_AA A 35 ? A 28 ? A 36 ? A 27 ? 1 A G 36 1_555 A C 27 1_555 A U 37 1_555 A A 26 1_555 0.018 -1.448 3.180 -1.844 2.470 34.955 -2.756 -0.293 3.068 4.103 3.063 35.087 18 AA_G36U37:A26C27_AA A 36 ? A 27 ? A 37 ? A 26 ? 1 A U 37 1_555 A A 26 1_555 A G 38 1_555 A U 25 1_555 1.222 -0.743 3.073 12.554 21.075 35.114 -3.045 -0.477 2.544 30.740 -18.311 42.612 19 AA_U37G38:U25A26_AA A 37 ? A 26 ? A 38 ? A 25 ? 1 A G 38 1_555 A U 25 1_555 A U 39 1_555 A U 24 1_555 0.061 -1.504 3.253 -6.179 5.998 33.375 -3.431 -1.022 2.891 10.234 10.543 34.437 20 AA_G38U39:U24U25_AA A 38 ? A 25 ? A 39 ? A 24 ? 1 A U 39 1_555 A U 24 1_555 A G 41 1_555 A C 23 1_555 -2.279 0.005 2.779 3.639 11.314 50.692 -0.621 2.802 2.567 13.009 -4.185 51.977 21 AA_U39G41:C23U24_AA A 39 ? A 24 ? A 41 ? A 23 ? 1 A G 41 1_555 A C 23 1_555 A C 42 1_555 A G 22 1_555 -0.260 -2.003 3.348 0.032 1.616 29.407 -4.289 0.519 3.236 3.180 -0.063 29.450 22 AA_G41C42:G22C23_AA A 41 ? A 23 ? A 42 ? A 22 ? 1 A C 42 1_555 A G 22 1_555 A A 43 1_555 A U 21 1_555 0.447 -2.100 3.203 2.944 2.155 24.986 -5.409 -0.197 3.046 4.948 -6.759 25.246 23 AA_C42A43:U21G22_AA A 42 ? A 22 ? A 43 ? A 21 ? 1 A A 43 1_555 A U 21 1_555 A G 44 1_555 A C 20 1_555 1.064 -2.253 3.181 0.297 7.272 27.246 -6.133 -2.124 2.518 15.098 -0.618 28.184 24 AA_A43G44:C20U21_AA A 43 ? A 21 ? A 44 ? A 20 ? 1 A G 44 1_555 A C 20 1_555 A C 45 1_555 A G 19 1_555 -1.262 -2.716 3.179 -4.633 0.869 30.923 -5.202 1.474 3.254 1.618 8.626 31.271 25 AA_G44C45:G19C20_AA A 44 ? A 20 ? A 45 ? A 19 ? 1 A C 45 1_555 A G 19 1_555 A C 46 1_555 A G 18 1_555 -0.056 -2.134 3.403 -0.298 1.411 30.234 -4.379 0.046 3.303 2.703 0.571 30.268 26 AA_C45C46:G18G19_AA A 45 ? A 19 ? A 46 ? A 18 ? 1 A C 46 1_555 A G 18 1_555 A G 47 1_555 A A 17 1_555 -0.761 -1.095 3.679 3.463 5.209 56.251 -1.478 1.018 3.525 5.506 -3.660 56.569 27 AA_C46G47:A17G18_AA A 46 ? A 18 ? A 47 ? A 17 ? 1 A G 47 1_555 A A 17 1_555 A C 53 1_555 A G 15 1_555 -1.056 -0.627 6.112 -2.956 11.328 59.831 -1.633 0.778 5.959 11.240 2.934 60.861 28 AA_G47C53:G15A17_AA A 47 ? A 17 ? A 53 ? A 15 ? 1 A C 53 1_555 A G 15 1_555 A A 54 1_555 A U 14 1_555 -0.113 -2.237 3.093 -0.171 -1.269 26.125 -4.612 0.206 3.197 -2.805 0.379 26.156 29 AA_C53A54:U14G15_AA A 53 ? A 15 ? A 54 ? A 14 ? 1 A A 54 1_555 A U 14 1_555 A G 55 1_555 A C 13 1_555 0.597 -1.982 3.152 1.099 -0.635 32.237 -3.457 -0.885 3.207 -1.143 -1.979 32.261 30 AA_A54G55:C13U14_AA A 54 ? A 14 ? A 55 ? A 13 ? 1 A G 55 1_555 A C 13 1_555 A C 56 1_555 A G 80 1_555 1.717 -1.125 3.365 7.932 3.417 49.431 -1.588 -1.421 3.504 4.051 -9.402 50.134 31 AA_G55C56:G80C13_AA A 55 ? A 13 ? A 56 ? A 80 ? 1 A C 56 1_555 A G 80 1_555 A A 57 1_555 A U 79 1_555 -0.008 -1.721 2.534 -4.912 11.326 30.483 -4.377 -0.564 1.778 20.516 8.897 32.833 32 AA_C56A57:U79G80_AA A 56 ? A 80 ? A 57 ? A 79 ? 1 A A 57 1_555 A U 79 1_555 A C 58 1_555 A G 78 1_555 -0.007 -1.696 3.419 1.822 2.213 34.371 -3.213 0.302 3.302 3.736 -3.077 34.487 33 AA_A57C58:G78U79_AA A 57 ? A 79 ? A 58 ? A 78 ? 1 A C 58 1_555 A G 78 1_555 A A 59 1_555 A U 77 1_555 0.045 -2.135 2.920 6.013 15.804 33.224 -4.942 0.535 1.744 25.675 -9.768 37.171 34 AA_C58A59:U77G78_AA A 58 ? A 78 ? A 59 ? A 77 ? 1 A A 59 1_555 A U 77 1_555 A U 60 1_555 A G 76 1_555 0.427 -1.233 3.252 -1.240 2.841 35.021 -2.456 -0.887 3.129 4.709 2.056 35.154 35 AA_A59U60:G76U77_AA A 59 ? A 77 ? A 60 ? A 76 ? 1 A U 60 1_555 A G 76 1_555 A C 61 1_555 A G 75 1_555 -0.103 -1.678 2.914 0.474 8.578 29.010 -4.642 0.276 2.332 16.669 -0.922 30.229 36 AA_U60C61:G75G76_AA A 60 ? A 76 ? A 61 ? A 75 ? 1 A C 61 1_555 A G 75 1_555 A U 62 1_555 A G 74 1_555 -0.559 -1.616 3.411 -0.922 2.848 36.335 -2.988 0.763 3.291 4.558 1.476 36.454 37 AA_C61U62:G74G75_AA A 61 ? A 75 ? A 62 ? A 74 ? 1 A U 62 1_555 A G 74 1_555 A G 64 1_555 A C 73 1_555 -2.157 -1.345 3.026 3.073 5.919 44.886 -2.205 3.037 2.692 7.701 -3.998 45.353 38 AA_U62G64:C73G74_AA A 62 ? A 74 ? A 64 ? A 73 ? 1 A G 64 1_555 A C 73 1_555 A G 65 1_555 A C 72 1_555 -1.146 -1.248 3.362 -1.570 -0.322 40.040 -1.784 1.487 3.413 -0.469 2.292 40.071 39 AA_G64G65:C72C73_AA A 64 ? A 73 ? A 65 ? A 72 ? 1 A G 65 1_555 A C 72 1_555 A U 66 1_555 A G 70 1_555 -0.743 -0.758 3.683 -12.151 -2.540 40.901 -0.744 -0.406 3.783 -3.537 16.924 42.666 40 AA_G65U66:G70C72_AA A 65 ? A 72 ? A 66 ? A 70 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9E9O _pdbx_initial_refinement_model.details 'Cs derivative of same RNA' # _atom_sites.entry_id 9E9Q _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.010339 _atom_sites.fract_transf_matrix[1][2] 0.005969 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011939 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008709 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ # loop_ #