HEADER VIRUS 10-NOV-24 9EAB TITLE SENECA VALLEY VIRUS ALTERED PARTICLE AT PHYSIOLOGICAL CONDITION (A- TITLE 2 PARTICLE[P]) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA,P1D,VIRION PROTEIN 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAPSID PROTEIN VP3; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: GAMMA,P1C,VIRION PROTEIN 3; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CAPSID PROTEIN VP2; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: BETA,P1B,VIRION PROTEIN 2; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: CAPSID PROTEIN VP4; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: UNP RESIDUES 93-150; COMPND 17 SYNONYM: P1A,RHO,VIRION PROTEIN 4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 3 ORGANISM_TAXID: 686944; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 6 ORGANISM_TAXID: 686944; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 9 ORGANISM_TAXID: 686944; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 12 ORGANISM_TAXID: 686944 KEYWDS SVV, CAPSID, PHYSIOLOGICAL CONDITION, VIRUS, NON-ENTEROVIRUS, A- KEYWDS 2 PARTICLE, ALTERED PARTICLE, GENOME RELEASE, CAPSID UNCOATING, SENECA KEYWDS 3 VALLEY VIRUS, SENECAVIRUS, ONCOLYTIC VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR R.KUMARAN,M.BOSTINA REVDAT 3 01-OCT-25 9EAB 1 JRNL REVDAT 2 03-SEP-25 9EAB 1 JRNL REVDAT 1 20-AUG-25 9EAB 0 JRNL AUTH R.KUMARAN,N.JAYAWARDENA,K.-.L.CHEN,A.-.R.ERUERA, JRNL AUTH 2 J.HODGKINSON-BEAN,L.N.BURGA,M.WOLF,M.BOSTINA JRNL TITL CRYO-EM STRUCTURE OF THE SENECA VALLEY VIRUS A-PARTICLE AND JRNL TITL 2 RELATED STRUCTURAL STATES. JRNL REF J.VIROL. V. 99 74425 2025 JRNL REFN ESSN 1098-5514 JRNL PMID 40833065 JRNL DOI 10.1128/JVI.00744-25 REMARK 2 REMARK 2 RESOLUTION. 3.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, ISOLDE, UCSF REMARK 3 CHIMERAX, CRYOSPARC, ISOLDE, COOT, REMARK 3 PHENIX, UCSF CHIMERAX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3CJI REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.390 REMARK 3 NUMBER OF PARTICLES : 858 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9EAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1000289839. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SENECA VALLEY VIRUS USA/SSV-001 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.25 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 240-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 490.43262 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 488.86738 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 487.90000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 488.60000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 488.60000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 244.56738 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 640.28570 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 91.48167 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 243.86738 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 640.71833 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 394.58570 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 640.71833 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 395.98570 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 242.46738 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 395.98570 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 243.86738 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 639.31833 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 640.98570 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 395.28570 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 244.30000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 244.30000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 640.98570 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 93.31430 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 395.28570 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 244.30000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -152.38570 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 488.60000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 490.00000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 -1.40000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 640.28570 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 92.88167 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 243.16738 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 488.86738 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 489.30000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 489.03262 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 640.71833 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 94.01430 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 244.73262 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 395.98570 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 246.13262 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -152.11833 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 243.86738 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -150.71833 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 92.61430 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 488.86738 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.70000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 -1.83262 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 488.60000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 488.60000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 640.28570 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 397.11833 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 244.03262 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 490.00000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 1.40000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 488.60000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 245.43262 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -150.28570 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 91.48167 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 -0.43262 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 1.13262 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 487.90000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 244.30000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -150.98570 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 393.88570 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 395.28570 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 245.70000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 639.58570 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 640.98570 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 94.71430 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 242.90000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 397.11833 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 245.43262 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 638.88570 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.70000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 -0.43262 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 487.46738 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 490.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 487.20000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 92.88167 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 244.56738 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 638.88570 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 489.30000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 490.43262 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 487.46738 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 490.00000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 487.20000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 -0.43262 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 488.86738 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 -0.70000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 490.00000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 488.60000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 -1.40000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 245.43262 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 640.28570 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 395.71833 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 246.13262 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 640.71833 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 92.61430 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -150.71833 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 395.98570 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 244.73262 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 94.01430 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 243.86738 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -152.11833 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -150.98570 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 395.28570 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 242.90000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 245.70000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 640.98570 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 393.88570 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 94.71430 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 244.30000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 639.58570 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 1.40000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 490.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 488.60000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -150.28570 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 92.88167 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 244.03262 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 1.13262 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 489.30000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 -1.83262 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -150.71833 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 94.01430 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 242.46738 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 94.01430 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 246.13262 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 639.31833 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 246.13262 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -150.71833 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 394.58570 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 1.13262 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.70000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 489.03262 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 1.40000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 -1.40000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -150.28570 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 397.11833 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 243.16738 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 1.40000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 -1.40000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 244.56738 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -150.28570 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 395.71833 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 490.43262 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 1.13262 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 -0.70000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 245.70000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -150.98570 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 93.31430 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 94.71430 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 245.70000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -152.38570 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -150.98570 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 94.71430 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 244.30000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 92.88167 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 245.43262 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -151.68570 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 489.30000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 -0.43262 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 -0.26738 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 490.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 490.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 397.11833 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 244.56738 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -151.68570 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.70000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 490.43262 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 -0.26738 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 13 REMARK 465 SER A 20 REMARK 465 SER A 28 REMARK 465 GLU B 61 REMARK 465 PRO B 62 REMARK 465 VAL B 63 REMARK 465 PRO B 64 REMARK 465 ALA B 65 REMARK 465 SER B 66 REMARK 465 SER D 40 REMARK 465 SER D 41 REMARK 465 ALA D 42 REMARK 465 SER D 43 REMARK 465 GLY D 44 REMARK 465 ALA D 45 REMARK 465 GLY D 46 REMARK 465 PRO D 47 REMARK 465 GLY D 48 REMARK 465 ASN D 49 REMARK 465 SER D 50 REMARK 465 ARG D 51 REMARK 465 GLY D 52 REMARK 465 GLY D 53 REMARK 465 LEU D 54 REMARK 465 ALA D 55 REMARK 465 GLY D 56 REMARK 465 LEU D 57 REMARK 465 LEU D 58 REMARK 465 THR D 59 REMARK 465 ASN D 60 REMARK 465 PHE D 61 REMARK 465 SER D 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ILE A 10 CD1 REMARK 470 ASN A 14 CG OD1 ND2 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 VAL A 33 CG2 REMARK 470 LEU A 43 CD1 CD2 REMARK 470 VAL A 48 CG1 REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 ALA A 53 CB REMARK 470 VAL A 54 CG1 CG2 REMARK 470 ARG A 57 CZ NH1 NH2 REMARK 470 THR A 61 CG2 REMARK 470 GLN A 62 CD OE1 NE2 REMARK 470 LEU A 91 CD1 REMARK 470 ALA A 93 CB REMARK 470 ASN A 94 CG OD1 ND2 REMARK 470 SER A 96 CB OG REMARK 470 ALA A 114 CB REMARK 470 THR A 117 CG2 REMARK 470 ASP A 133 CB CG OD1 OD2 REMARK 470 LEU A 134 CD2 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 LEU A 201 CD1 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 LYS A 228 CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 ILE A 239 CD1 REMARK 470 ASP B 20 CG OD1 OD2 REMARK 470 THR B 22 CG2 REMARK 470 LEU B 37 CD2 REMARK 470 THR B 68 CG2 REMARK 470 VAL B 70 CG1 CG2 REMARK 470 VAL B 73 CG1 REMARK 470 THR B 77 CG2 REMARK 470 GLN B 78 CG CD OE1 NE2 REMARK 470 PHE B 79 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 84 CD2 REMARK 470 ILE B 89 CD1 REMARK 470 MET B 150 CG SD CE REMARK 470 ILE B 156 CD1 REMARK 470 LEU B 161 CD1 CD2 REMARK 470 ILE B 183 CD1 REMARK 470 ILE B 202 CD1 REMARK 470 LEU B 204 CG CD1 CD2 REMARK 470 ASP B 207 CG OD1 OD2 REMARK 470 GLN B 210 CD NE2 REMARK 470 ILE B 214 CD1 REMARK 470 ARG C 13 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 14 CB CG1 CG2 REMARK 470 GLN C 17 CG CD OE1 NE2 REMARK 470 THR C 26 CG2 REMARK 470 LYS C 42 CD CE NZ REMARK 470 LEU C 85 CD1 CD2 REMARK 470 LEU C 123 CD2 REMARK 470 ASP C 146 CG OD1 OD2 REMARK 470 LYS C 150 CG CD CE NZ REMARK 470 LEU C 152 CD1 CD2 REMARK 470 GLN C 153 CG CD OE1 NE2 REMARK 470 GLU C 154 CG CD OE1 OE2 REMARK 470 LEU C 155 CG CD1 CD2 REMARK 470 VAL C 161 CG1 REMARK 470 ASP C 165 CG OD1 OD2 REMARK 470 ARG C 183 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 239 CD2 REMARK 470 LYS C 249 CG CD CE NZ REMARK 470 THR C 254 CG2 REMARK 470 GLU C 257 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 130.53 -37.17 REMARK 500 ARG A 39 147.40 -172.43 REMARK 500 PHE A 72 156.91 63.97 REMARK 500 PRO A 95 -169.44 -71.63 REMARK 500 PRO A 142 -179.72 -68.69 REMARK 500 SER A 150 171.13 78.74 REMARK 500 SER A 250 -168.23 -163.74 REMARK 500 ASN B 28 60.41 61.59 REMARK 500 ARG B 58 163.00 61.92 REMARK 500 TYR B 69 47.30 -140.13 REMARK 500 ASP B 81 55.63 32.79 REMARK 500 PRO B 88 -176.51 -69.75 REMARK 500 ASP B 191 31.67 -140.76 REMARK 500 ASP B 207 -5.38 75.60 REMARK 500 GLN B 210 171.55 175.68 REMARK 500 SER B 211 72.72 57.50 REMARK 500 THR B 225 148.39 -170.91 REMARK 500 ALA C 35 -146.85 61.21 REMARK 500 SER C 48 31.70 -98.32 REMARK 500 PHE C 78 -3.95 75.91 REMARK 500 GLN C 116 110.59 -161.54 REMARK 500 PRO C 185 -178.21 -67.82 REMARK 500 THR C 211 -32.07 -130.47 REMARK 500 ASP C 255 75.82 51.91 REMARK 500 PRO C 256 170.95 -56.79 REMARK 500 ARG C 273 -175.36 -171.08 REMARK 500 MET D 20 32.08 -141.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9EAA RELATED DB: PDB REMARK 900 A-PARTICLE[C] REMARK 900 RELATED ID: EMD-47828 RELATED DB: EMDB REMARK 900 SENECA VALLEY VIRUS ALTERED PARTICLE AT PHYSIOLOGICAL CONDITION (A- REMARK 900 PARTICLE[P]) DBREF 9EAB A 1 258 UNP Q155Z9 POLG_SVV1 674 931 DBREF 9EAB B 1 238 UNP Q155Z9 POLG_SVV1 435 672 DBREF 9EAB C 13 279 UNP Q155Z9 POLG_SVV1 163 429 DBREF 9EAB D 14 72 UNP Q155Z9 POLG_SVV1 93 150 SEQRES 1 A 258 SER THR ASP ASN ALA GLU THR GLY VAL ILE GLU ALA GLY SEQRES 2 A 258 ASN THR ASP THR ASP PHE SER GLY GLU LEU ALA ALA PRO SEQRES 3 A 258 GLY SER ASN HIS THR ASN VAL LYS PHE LEU PHE ASP ARG SEQRES 4 A 258 SER ARG LEU LEU ASN VAL ILE LYS VAL LEU GLU LYS ASP SEQRES 5 A 258 ALA VAL PHE PRO ARG PRO PHE PRO THR GLN GLU GLY ALA SEQRES 6 A 258 GLN GLN ASP ASP GLY TYR PHE CYS LEU LEU THR PRO ARG SEQRES 7 A 258 PRO THR VAL ALA SER ARG PRO ALA THR ARG PHE GLY LEU SEQRES 8 A 258 TYR ALA ASN PRO SER GLY SER GLY VAL LEU ALA ASN THR SEQRES 9 A 258 SER LEU ASP PHE ASN PHE TYR SER LEU ALA CYS PHE THR SEQRES 10 A 258 TYR PHE ARG SER ASP LEU GLU VAL THR VAL VAL SER LEU SEQRES 11 A 258 GLU PRO ASP LEU GLU PHE ALA VAL GLY TRP PHE PRO SER SEQRES 12 A 258 GLY SER GLU TYR GLN ALA SER SER PHE VAL TYR ASP GLN SEQRES 13 A 258 LEU HIS VAL PRO PHE HIS PHE THR GLY ARG THR PRO ARG SEQRES 14 A 258 ALA PHE ALA SER LYS GLY GLY LYS VAL SER PHE VAL LEU SEQRES 15 A 258 PRO TRP ASN SER VAL SER SER VAL LEU PRO VAL ARG TRP SEQRES 16 A 258 GLY GLY ALA SER LYS LEU SER SER ALA THR ARG GLY LEU SEQRES 17 A 258 PRO ALA HIS ALA ASP TRP GLY THR ILE TYR ALA PHE VAL SEQRES 18 A 258 PRO ARG PRO ASN GLU LYS LYS SER THR ALA VAL LYS HIS SEQRES 19 A 258 VAL ALA VAL TYR ILE ARG TYR LYS ASN ALA ARG ALA TRP SEQRES 20 A 258 CYS PRO SER MET LEU PRO PHE ARG SER TYR LYS SEQRES 1 B 238 GLY PRO ILE PRO THR ALA PRO ARG GLU ASN SER LEU MET SEQRES 2 B 238 PHE LEU SER THR LEU PRO ASP ASP THR VAL PRO ALA TYR SEQRES 3 B 238 GLY ASN VAL ARG THR PRO PRO VAL ASN TYR LEU PRO GLY SEQRES 4 B 238 GLU ILE THR ASP LEU LEU GLN LEU ALA ARG ILE PRO THR SEQRES 5 B 238 LEU MET ALA PHE GLU ARG VAL PRO GLU PRO VAL PRO ALA SEQRES 6 B 238 SER ASP THR TYR VAL PRO TYR VAL ALA VAL PRO THR GLN SEQRES 7 B 238 PHE ASP ASP ARG PRO LEU ILE SER PHE PRO ILE THR LEU SEQRES 8 B 238 SER ASP PRO VAL TYR GLN ASN THR LEU VAL GLY ALA ILE SEQRES 9 B 238 SER SER ASN PHE ALA ASN TYR ARG GLY CYS ILE GLN ILE SEQRES 10 B 238 THR LEU THR PHE CYS GLY PRO MET MET ALA ARG GLY LYS SEQRES 11 B 238 PHE LEU LEU SER TYR SER PRO PRO ASN GLY THR GLN PRO SEQRES 12 B 238 GLN THR LEU SER GLU ALA MET GLN CYS THR TYR SER ILE SEQRES 13 B 238 TRP ASP ILE GLY LEU ASN SER SER TRP THR PHE VAL VAL SEQRES 14 B 238 PRO TYR ILE SER PRO SER ASP TYR ARG GLU THR ARG ALA SEQRES 15 B 238 ILE THR ASN SER VAL TYR SER ALA ASP GLY TRP PHE SER SEQRES 16 B 238 LEU HIS LYS LEU THR LYS ILE THR LEU PRO PRO ASP CYS SEQRES 17 B 238 PRO GLN SER PRO CYS ILE LEU PHE PHE ALA SER ALA GLY SEQRES 18 B 238 GLU ASP TYR THR LEU ARG LEU PRO VAL ASP CYS ASN PRO SEQRES 19 B 238 SER TYR VAL PHE SEQRES 1 C 267 ARG VAL THR THR GLN THR ALA GLY ASN THR ALA ILE ASN SEQRES 2 C 267 THR GLN SER SER LEU GLY VAL LEU CYS ALA TYR VAL GLU SEQRES 3 C 267 ASP PRO THR LYS SER ASP PRO PRO SER SER SER THR ASP SEQRES 4 C 267 GLN PRO THR THR THR PHE THR ALA ILE ASP ARG TRP TYR SEQRES 5 C 267 THR GLY ARG LEU ASN SER TRP THR LYS ALA VAL LYS THR SEQRES 6 C 267 PHE SER PHE GLN ALA VAL PRO LEU PRO GLY ALA PHE LEU SEQRES 7 C 267 SER ARG GLN GLY GLY LEU ASN GLY GLY ALA PHE THR ALA SEQRES 8 C 267 THR LEU HIS ARG HIS PHE LEU MET LYS CYS GLY TRP GLN SEQRES 9 C 267 VAL GLN VAL GLN CYS ASN LEU THR GLN PHE HIS GLN GLY SEQRES 10 C 267 ALA LEU LEU VAL ALA MET VAL PRO GLU THR THR LEU ASP SEQRES 11 C 267 VAL LYS PRO ASP GLY LYS ALA LYS SER LEU GLN GLU LEU SEQRES 12 C 267 ASN GLU GLU GLN TRP VAL GLU MET SER ASP ASP TYR ARG SEQRES 13 C 267 THR GLY LYS ASN MET PRO PHE GLN SER LEU GLY THR TYR SEQRES 14 C 267 TYR ARG PRO PRO ASN TRP THR TRP GLY PRO ASN PHE ILE SEQRES 15 C 267 ASN PRO TYR GLN VAL THR VAL PHE PRO HIS GLN ILE LEU SEQRES 16 C 267 ASN ALA ARG THR SER THR SER VAL ASP ILE ASN VAL PRO SEQRES 17 C 267 TYR ILE GLY GLU THR PRO THR GLN SER SER GLU THR GLN SEQRES 18 C 267 ASN SER TRP THR LEU LEU VAL MET VAL LEU VAL PRO LEU SEQRES 19 C 267 ASP TYR LYS GLU GLY ALA THR THR ASP PRO GLU ILE THR SEQRES 20 C 267 PHE SER VAL ARG PRO THR SER PRO TYR PHE ASN GLY LEU SEQRES 21 C 267 ARG ASN ARG TYR THR ALA GLY SEQRES 1 D 58 ARG GLY ASN ASN GLY ASN MET THR PHE ASN TYR TYR ALA SEQRES 2 D 58 ASN THR TYR GLN ASN SER VAL ASP PHE SER THR SER SER SEQRES 3 D 58 SER ALA SER GLY ALA GLY PRO GLY ASN SER ARG GLY GLY SEQRES 4 D 58 LEU ALA GLY LEU LEU THR ASN PHE SER GLY ILE LEU ASN SEQRES 5 D 58 PRO LEU GLY TYR LEU LYS HET CA B 500 1 HETNAM CA CALCIUM ION FORMUL 5 CA CA 2+ HELIX 1 AA1 ASN A 4 GLY A 8 5 5 HELIX 2 AA2 ASN A 32 PHE A 37 1 6 HELIX 3 AA3 ASP A 107 LEU A 113 1 7 HELIX 4 AA4 HIS A 162 THR A 164 5 3 HELIX 5 AA5 PRO A 224 LYS A 228 5 5 HELIX 6 AA6 LEU B 44 ARG B 49 1 6 HELIX 7 AA7 ASP B 93 GLN B 97 5 5 HELIX 8 AA8 THR B 99 SER B 106 1 8 HELIX 9 AA9 THR B 145 CYS B 152 1 8 HELIX 10 AB1 ASN B 233 PHE B 238 5 6 HELIX 11 AB2 PRO C 86 ARG C 92 1 7 HELIX 12 AB3 GLN C 93 LEU C 96 5 4 HELIX 13 AB4 GLY C 99 ARG C 107 1 9 HELIX 14 AB5 GLN C 153 GLU C 158 1 6 HELIX 15 AB6 SER C 164 GLY C 170 1 7 HELIX 16 AB7 ASN C 195 PHE C 202 5 8 HELIX 17 AB8 ALA D 26 ASN D 31 1 6 SHEET 1 AA1 5 THR A 2 ASP A 3 0 SHEET 2 AA1 5 SER B 164 VAL B 168 -1 O SER B 164 N ASP A 3 SHEET 3 AA1 5 ILE B 115 CYS B 122 -1 N ILE B 117 O PHE B 167 SHEET 4 AA1 5 CYS B 213 ALA B 220 -1 O PHE B 217 N THR B 118 SHEET 5 AA1 5 THR B 52 LEU B 53 -1 N THR B 52 O ALA B 218 SHEET 1 AA2 5 THR A 2 ASP A 3 0 SHEET 2 AA2 5 SER B 164 VAL B 168 -1 O SER B 164 N ASP A 3 SHEET 3 AA2 5 ILE B 115 CYS B 122 -1 N ILE B 117 O PHE B 167 SHEET 4 AA2 5 CYS B 213 ALA B 220 -1 O PHE B 217 N THR B 118 SHEET 5 AA2 5 TYR B 72 ALA B 74 -1 N VAL B 73 O ILE B 214 SHEET 1 AA3 4 ARG A 41 LYS A 47 0 SHEET 2 AA3 4 HIS A 234 ALA A 246 -1 O VAL A 237 N LEU A 43 SHEET 3 AA3 4 TYR A 118 SER A 129 -1 N VAL A 128 O ALA A 236 SHEET 4 AA3 4 VAL A 178 LEU A 182 -1 O LEU A 182 N LEU A 123 SHEET 1 AA4 4 ARG A 41 LYS A 47 0 SHEET 2 AA4 4 HIS A 234 ALA A 246 -1 O VAL A 237 N LEU A 43 SHEET 3 AA4 4 TYR A 118 SER A 129 -1 N VAL A 128 O ALA A 236 SHEET 4 AA4 4 LEU A 191 PRO A 192 -1 O LEU A 191 N PHE A 119 SHEET 1 AA5 4 CYS A 73 LEU A 74 0 SHEET 2 AA5 4 THR A 216 PHE A 220 -1 O ILE A 217 N CYS A 73 SHEET 3 AA5 4 ALA A 137 PHE A 141 -1 N GLY A 139 O TYR A 218 SHEET 4 AA5 4 ARG A 169 PHE A 171 -1 O ALA A 170 N VAL A 138 SHEET 1 AA6 3 ARG A 84 PRO A 85 0 SHEET 2 AA6 3 THR A 80 VAL A 81 -1 N VAL A 81 O ARG A 84 SHEET 3 AA6 3 THR A 104 SER A 105 -1 O SER A 105 N THR A 80 SHEET 1 AA7 2 PHE A 89 LEU A 91 0 SHEET 2 AA7 2 ASN C 186 TRP C 189 -1 O TRP C 189 N PHE A 89 SHEET 1 AA8 2 SER A 151 TYR A 154 0 SHEET 2 AA8 2 LEU A 157 PRO A 160 -1 O VAL A 159 N PHE A 152 SHEET 1 AA9 2 ARG B 30 THR B 31 0 SHEET 2 AA9 2 VAL D 33 ASP D 34 1 O VAL D 33 N THR B 31 SHEET 1 AB1 4 ILE B 85 PRO B 88 0 SHEET 2 AB1 4 TRP B 193 LYS B 198 -1 O PHE B 194 N PHE B 87 SHEET 3 AB1 4 LYS B 130 SER B 136 -1 N LEU B 132 O HIS B 197 SHEET 4 AB1 4 THR B 153 ASP B 158 -1 O TRP B 157 N PHE B 131 SHEET 1 AB2 3 ARG B 178 GLU B 179 0 SHEET 2 AB2 3 ASN B 110 ARG B 112 -1 N TYR B 111 O ARG B 178 SHEET 3 AB2 3 THR B 225 LEU B 226 -1 O THR B 225 N ARG B 112 SHEET 1 AB3 2 THR C 15 ALA C 19 0 SHEET 2 AB3 2 THR C 22 THR C 26 -1 O THR C 22 N ALA C 19 SHEET 1 AB4 2 VAL C 32 LEU C 33 0 SHEET 2 AB4 2 LEU D 71 LYS D 72 -1 O LYS D 72 N VAL C 32 SHEET 1 AB5 4 TYR C 64 ARG C 67 0 SHEET 2 AB5 4 ILE C 258 VAL C 262 -1 O VAL C 262 N TYR C 64 SHEET 3 AB5 4 TRP C 115 CYS C 121 -1 N GLN C 118 O SER C 261 SHEET 4 AB5 4 SER C 214 VAL C 219 -1 O VAL C 215 N VAL C 119 SHEET 1 AB6 4 PHE C 80 LEU C 85 0 SHEET 2 AB6 4 TRP C 236 VAL C 242 -1 O VAL C 240 N GLN C 81 SHEET 3 AB6 4 LEU C 131 PRO C 137 -1 N LEU C 132 O MET C 241 SHEET 4 AB6 4 HIS C 204 ILE C 206 -1 O GLN C 205 N VAL C 133 SHEET 1 AB7 3 GLN C 228 SER C 229 0 SHEET 2 AB7 3 LEU C 110 LYS C 112 -1 N MET C 111 O GLN C 228 SHEET 3 AB7 3 TYR C 268 ASN C 270 -1 O ASN C 270 N LEU C 110 CISPEP 1 PHE A 59 PRO A 60 0 -3.97 CISPEP 2 LEU C 85 PRO C 86 0 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 437 0 1 17 53 0 0 6 6033 4 0 65 END