data_9EBP # _entry.id 9EBP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.407 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9EBP pdb_00009ebp 10.2210/pdb9ebp/pdb WWPDB D_1000290126 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-11-19 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9EBP _pdbx_database_status.recvd_initial_deposition_date 2024-11-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email robert.batey@colorado.edu _pdbx_contact_author.name_first Robert _pdbx_contact_author.name_last Batey _pdbx_contact_author.name_mi T _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1384-6625 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Batey, R.T.' 1 0000-0002-1384-6625 'Spradlin, S.F.' 2 0000-0001-6595-5949 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of the Bacillus subtilis yjdF riboswitch complexed with lumichrome in the presence of iridium hexammine' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Batey, R.T.' 1 0000-0002-1384-6625 primary 'Spradlin, S.F.' 2 0000-0001-6595-5949 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (81-MER)' 26212.580 2 ? ? ? ? 2 non-polymer syn LUMICHROME 242.233 2 ? ? ? ? 3 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 10 ? ? ? ? 4 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GDP)GAUGAAAAAACACGAUUCGGUUGGUAGUCCGGAUGCCGAAAGGUCAGUAACCUUCCACGAAAGUGGAUGUCCAUC AUCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAUGAAAAAACACGAUUCGGUUGGUAGUCCGGAUGCCGAAAGGUCAGUAACCUUCCACGAAAGUGGAUGUCCAUCAUCC A ; _entity_poly.pdbx_strand_id A,M _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 LUMICHROME LUM 3 'IRIDIUM HEXAMMINE ION' IRI 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GDP n 1 2 G n 1 3 A n 1 4 U n 1 5 G n 1 6 A n 1 7 A n 1 8 A n 1 9 A n 1 10 A n 1 11 A n 1 12 C n 1 13 A n 1 14 C n 1 15 G n 1 16 A n 1 17 U n 1 18 U n 1 19 C n 1 20 G n 1 21 G n 1 22 U n 1 23 U n 1 24 G n 1 25 G n 1 26 U n 1 27 A n 1 28 G n 1 29 U n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 A n 1 35 U n 1 36 G n 1 37 C n 1 38 C n 1 39 G n 1 40 A n 1 41 A n 1 42 A n 1 43 G n 1 44 G n 1 45 U n 1 46 C n 1 47 A n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 C n 1 53 C n 1 54 U n 1 55 U n 1 56 C n 1 57 C n 1 58 A n 1 59 C n 1 60 G n 1 61 A n 1 62 A n 1 63 A n 1 64 G n 1 65 U n 1 66 G n 1 67 G n 1 68 A n 1 69 U n 1 70 G n 1 71 U n 1 72 C n 1 73 C n 1 74 A n 1 75 U n 1 76 C n 1 77 A n 1 78 U n 1 79 C n 1 80 C n 1 81 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 81 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 LUM non-polymer . LUMICHROME '7,8-DIMETHYLALLOXAZINE; 6,7-DIMETHYLALLOXAZINE' 'C12 H10 N4 O2' 242.233 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GDP 1 1 1 GDP GDP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 U 17 17 17 U U A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 G 20 20 20 G G A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 U 26 26 26 U U A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 A 34 34 34 A A A . n A 1 35 U 35 35 35 U U A . n A 1 36 G 36 36 36 G G A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 G 39 39 39 G G A . n A 1 40 A 40 40 40 A A A . n A 1 41 A 41 41 41 A A A . n A 1 42 A 42 42 42 A A A . n A 1 43 G 43 43 43 G G A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 A 50 50 50 A A A . n A 1 51 A 51 51 51 A A A . n A 1 52 C 52 52 52 C C A . n A 1 53 C 53 53 53 C C A . n A 1 54 U 54 54 54 U U A . n A 1 55 U 55 55 55 U U A . n A 1 56 C 56 56 56 C C A . n A 1 57 C 57 57 57 C C A . n A 1 58 A 58 58 58 A A A . n A 1 59 C 59 59 59 C C A . n A 1 60 G 60 60 60 G G A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 A 63 63 63 A A A . n A 1 64 G 64 64 64 G G A . n A 1 65 U 65 65 65 U U A . n A 1 66 G 66 66 66 G G A . n A 1 67 G 67 67 67 G G A . n A 1 68 A 68 68 68 A A A . n A 1 69 U 69 69 69 U U A . n A 1 70 G 70 70 70 G G A . n A 1 71 U 71 71 71 U U A . n A 1 72 C 72 72 72 C C A . n A 1 73 C 73 73 73 C C A . n A 1 74 A 74 74 74 A A A . n A 1 75 U 75 75 75 U U A . n A 1 76 C 76 76 76 C C A . n A 1 77 A 77 77 77 A A A . n A 1 78 U 78 78 78 U U A . n A 1 79 C 79 79 79 C C A . n A 1 80 C 80 80 80 C C A . n A 1 81 A 81 81 81 A A A . n B 1 1 GDP 1 1 1 GDP GDP M . n B 1 2 G 2 2 2 G G M . n B 1 3 A 3 3 3 A A M . n B 1 4 U 4 4 4 U U M . n B 1 5 G 5 5 5 G G M . n B 1 6 A 6 6 6 A A M . n B 1 7 A 7 7 7 A A M . n B 1 8 A 8 8 8 A A M . n B 1 9 A 9 9 9 A A M . n B 1 10 A 10 10 10 A A M . n B 1 11 A 11 11 11 A A M . n B 1 12 C 12 12 12 C C M . n B 1 13 A 13 13 13 A A M . n B 1 14 C 14 14 14 C C M . n B 1 15 G 15 15 15 G G M . n B 1 16 A 16 16 16 A A M . n B 1 17 U 17 17 17 U U M . n B 1 18 U 18 18 18 U U M . n B 1 19 C 19 19 19 C C M . n B 1 20 G 20 20 20 G G M . n B 1 21 G 21 21 21 G G M . n B 1 22 U 22 22 22 U U M . n B 1 23 U 23 23 23 U U M . n B 1 24 G 24 24 24 G G M . n B 1 25 G 25 25 25 G G M . n B 1 26 U 26 26 26 U U M . n B 1 27 A 27 27 27 A A M . n B 1 28 G 28 28 28 G G M . n B 1 29 U 29 29 29 U U M . n B 1 30 C 30 30 30 C C M . n B 1 31 C 31 31 31 C C M . n B 1 32 G 32 32 32 G G M . n B 1 33 G 33 33 33 G G M . n B 1 34 A 34 34 34 A A M . n B 1 35 U 35 35 35 U U M . n B 1 36 G 36 36 36 G G M . n B 1 37 C 37 37 37 C C M . n B 1 38 C 38 38 38 C C M . n B 1 39 G 39 39 39 G G M . n B 1 40 A 40 40 40 A A M . n B 1 41 A 41 41 41 A A M . n B 1 42 A 42 42 42 A A M . n B 1 43 G 43 43 43 G G M . n B 1 44 G 44 44 44 G G M . n B 1 45 U 45 45 45 U U M . n B 1 46 C 46 46 46 C C M . n B 1 47 A 47 47 47 A A M . n B 1 48 G 48 48 48 G G M . n B 1 49 U 49 49 49 U U M . n B 1 50 A 50 50 50 A A M . n B 1 51 A 51 51 51 A A M . n B 1 52 C 52 52 52 C C M . n B 1 53 C 53 53 53 C C M . n B 1 54 U 54 54 54 U U M . n B 1 55 U 55 55 55 U U M . n B 1 56 C 56 56 56 C C M . n B 1 57 C 57 57 57 C C M . n B 1 58 A 58 58 58 A A M . n B 1 59 C 59 59 59 C C M . n B 1 60 G 60 60 60 G G M . n B 1 61 A 61 61 61 A A M . n B 1 62 A 62 62 62 A A M . n B 1 63 A 63 63 63 A A M . n B 1 64 G 64 64 64 G G M . n B 1 65 U 65 65 65 U U M . n B 1 66 G 66 66 66 G G M . n B 1 67 G 67 67 67 G G M . n B 1 68 A 68 68 68 A A M . n B 1 69 U 69 69 69 U U M . n B 1 70 G 70 70 70 G G M . n B 1 71 U 71 71 71 U U M . n B 1 72 C 72 72 72 C C M . n B 1 73 C 73 73 73 C C M . n B 1 74 A 74 74 74 A A M . n B 1 75 U 75 75 75 U U M . n B 1 76 C 76 76 76 C C M . n B 1 77 A 77 77 77 A A M . n B 1 78 U 78 78 78 U U M . n B 1 79 C 79 79 79 C C M . n B 1 80 C 80 80 80 C C M . n B 1 81 A 81 81 81 A A M . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id LUM _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id LUM _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LUM 1 101 2 LUM LUM A . D 3 IRI 1 102 1 IRI IRI A . E 3 IRI 1 103 2 IRI IRI A . F 3 IRI 1 104 7 IRI IRI A . G 3 IRI 1 105 9 IRI IRI A . H 3 IRI 1 106 10 IRI IRI A . I 3 IRI 1 107 11 IRI IRI A . J 2 LUM 1 101 1 LUM LUM M . K 3 IRI 1 102 5 IRI IRI M . L 3 IRI 1 103 6 IRI IRI M . M 3 IRI 1 104 8 IRI IRI M . N 3 IRI 1 105 12 IRI IRI M . O 4 HOH 1 201 12 HOH HOH A . O 4 HOH 2 202 11 HOH HOH A . O 4 HOH 3 203 14 HOH HOH A . O 4 HOH 4 204 16 HOH HOH A . O 4 HOH 5 205 5 HOH HOH A . O 4 HOH 6 206 17 HOH HOH A . O 4 HOH 7 207 18 HOH HOH A . O 4 HOH 8 208 3 HOH HOH A . O 4 HOH 9 209 8 HOH HOH A . O 4 HOH 10 210 19 HOH HOH A . O 4 HOH 11 211 2 HOH HOH A . O 4 HOH 12 212 1 HOH HOH A . O 4 HOH 13 213 6 HOH HOH A . O 4 HOH 14 214 10 HOH HOH A . P 4 HOH 1 201 20 HOH HOH M . P 4 HOH 2 202 13 HOH HOH M . P 4 HOH 3 203 7 HOH HOH M . P 4 HOH 4 204 15 HOH HOH M . P 4 HOH 5 205 4 HOH HOH M . P 4 HOH 6 206 21 HOH HOH M . P 4 HOH 7 207 9 HOH HOH M . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9EBP _cell.details ? _cell.formula_units_Z ? _cell.length_a 111.572 _cell.length_a_esd ? _cell.length_b 65.817 _cell.length_b_esd ? _cell.length_c 81.246 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9EBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9EBP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '5% MPD, 3 mM spermine, 50 mM Na-cacodylate pH 7.0, 20 mM NaCl' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-05-05 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1055 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1055 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9EBP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.70 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16987 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 43.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.025 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_CC_star 1.00 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.091 _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1635 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.4 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.347 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.815 _reflns_shell.pdbx_CC_star 0.948 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 1.211 _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9EBP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.700 _refine.ls_d_res_low 45.989 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16987 _refine.ls_number_reflns_R_free 3126 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.22 _refine.ls_percent_reflns_R_free 9.93 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2519 _refine.ls_R_factor_R_free 0.2898 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2475 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.03 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.58 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3476 _refine_hist.pdbx_number_atoms_ligand 106 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 3603 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 45.989 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 3991 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.159 ? 6270 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.869 ? 1922 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.029 ? 808 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 164 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.7000 2.7422 . . 131 1195 93.00 . . . . 0.5184 . . . . . . . . . . . 0.5866 'X-RAY DIFFRACTION' 2.7422 2.7872 . . 134 1265 99.00 . . . . 0.4848 . . . . . . . . . . . 0.5218 'X-RAY DIFFRACTION' 2.7872 2.8352 . . 145 1305 99.00 . . . . 0.4692 . . . . . . . . . . . 0.5065 'X-RAY DIFFRACTION' 2.8352 2.8868 . . 146 1312 100.00 . . . . 0.4153 . . . . . . . . . . . 0.6301 'X-RAY DIFFRACTION' 2.8868 2.9423 . . 141 1293 100.00 . . . . 0.3795 . . . . . . . . . . . 0.4383 'X-RAY DIFFRACTION' 2.9423 3.0023 . . 146 1313 100.00 . . . . 0.3290 . . . . . . . . . . . 0.3239 'X-RAY DIFFRACTION' 3.0023 3.0676 . . 137 1271 100.00 . . . . 0.3115 . . . . . . . . . . . 0.4007 'X-RAY DIFFRACTION' 3.0676 3.1389 . . 143 1299 99.00 . . . . 0.2944 . . . . . . . . . . . 0.3272 'X-RAY DIFFRACTION' 3.1389 3.2174 . . 143 1261 99.00 . . . . 0.2844 . . . . . . . . . . . 0.3161 'X-RAY DIFFRACTION' 3.2174 3.3044 . . 139 1309 99.00 . . . . 0.2665 . . . . . . . . . . . 0.3095 'X-RAY DIFFRACTION' 3.3044 3.4016 . . 139 1304 99.00 . . . . 0.2513 . . . . . . . . . . . 0.3081 'X-RAY DIFFRACTION' 3.4016 3.5114 . . 141 1271 99.00 . . . . 0.2395 . . . . . . . . . . . 0.3009 'X-RAY DIFFRACTION' 3.5114 3.6368 . . 147 1309 100.00 . . . . 0.2269 . . . . . . . . . . . 0.2434 'X-RAY DIFFRACTION' 3.6368 3.7824 . . 139 1283 100.00 . . . . 0.2067 . . . . . . . . . . . 0.2300 'X-RAY DIFFRACTION' 3.7824 3.9544 . . 145 1297 100.00 . . . . 0.1974 . . . . . . . . . . . 0.2659 'X-RAY DIFFRACTION' 3.9544 4.1628 . . 143 1316 100.00 . . . . 0.1974 . . . . . . . . . . . 0.2346 'X-RAY DIFFRACTION' 4.1628 4.4234 . . 142 1290 100.00 . . . . 0.2002 . . . . . . . . . . . 0.2533 'X-RAY DIFFRACTION' 4.4234 4.7646 . . 144 1319 100.00 . . . . 0.2098 . . . . . . . . . . . 0.2076 'X-RAY DIFFRACTION' 4.7646 5.2435 . . 147 1276 100.00 . . . . 0.2145 . . . . . . . . . . . 0.2145 'X-RAY DIFFRACTION' 5.2435 6.0008 . . 145 1289 100.00 . . . . 0.2233 . . . . . . . . . . . 0.2535 'X-RAY DIFFRACTION' 6.0008 7.5549 . . 146 1305 100.00 . . . . 0.2417 . . . . . . . . . . . 0.2712 'X-RAY DIFFRACTION' 7.5549 45.989 . . 143 1268 97.00 . . . . 0.2501 . . . . . . . . . . . 0.3441 # _struct.entry_id 9EBP _struct.title 'Structure of the Bacillus subtilis yjdF riboswitch complexed with lumichrome in the presence of iridium hexammine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9EBP _struct_keywords.text 'riboswitch, aptamer, lumichrome, iridium hexammine, yjdF, azaaromatic, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9EBP _struct_ref.pdbx_db_accession 9EBP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9EBP A 1 ? 81 ? 9EBP 1 ? 81 ? 1 81 2 1 9EBP M 1 ? 81 ? 9EBP 1 ? 81 ? 1 81 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,O 2 1 B,J,K,L,M,N,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GDP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GDP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale none ? A GDP 1 O6 ? ? ? 1_555 A C 80 N4 ? ? A GDP 1 A C 80 1_555 ? ? ? ? ? ? ? 1.299 ? ? covale3 covale both ? B GDP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? M GDP 1 M G 2 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? I IRI . IR ? ? ? 1_555 N IRI . N3 ? ? A IRI 107 M IRI 105 2_766 ? ? ? ? ? ? ? 2.026 ? ? metalc2 metalc ? ? I IRI . IR ? ? ? 1_555 N IRI . N2 ? ? A IRI 107 M IRI 105 2_766 ? ? ? ? ? ? ? 2.080 ? ? hydrog1 hydrog ? ? A GDP 1 N1 ? ? ? 1_555 A C 80 O2 ? ? A GDP 1 A C 80 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog2 hydrog ? ? A GDP 1 N2 ? ? ? 1_555 A C 80 N3 ? ? A GDP 1 A C 80 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 2 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 2 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 2 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 78 N3 ? ? A A 3 A U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 78 O4 ? ? A A 3 A U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 4 A A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 4 A A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 76 N3 ? ? A G 5 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 76 O2 ? ? A G 5 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 76 N4 ? ? A G 5 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 75 N3 ? ? A A 6 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 75 O4 ? ? A A 6 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 25 N2 ? ? A A 9 A G 25 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 10 A U 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? A A 10 N7 ? ? ? 1_555 A U 26 N3 ? ? A A 10 A U 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 48 N2 ? ? A C 12 A G 48 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog19 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 13 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 13 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 13 N3 ? ? ? 1_555 A A 47 N6 ? ? A A 13 A A 47 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog22 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 14 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 14 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 14 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 35 N3 ? ? A A 16 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 35 O4 ? ? A A 16 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 17 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 17 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 18 N3 ? ? ? 1_555 A G 33 O6 ? ? A U 18 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A U 18 O2 ? ? ? 1_555 A G 33 N1 ? ? A U 18 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog31 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 19 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 19 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 19 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 20 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 20 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 20 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 27 N7 ? ? A U 22 A A 27 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 27 N6 ? ? A U 22 A A 27 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog42 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 24 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 24 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 24 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 25 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 25 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 25 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 27 N1 ? ? ? 1_555 A U 49 N3 ? ? A A 27 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 27 N6 ? ? ? 1_555 A U 49 O4 ? ? A A 27 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 36 N1 ? ? ? 1_555 A U 45 O2 ? ? A G 36 A U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? A G 36 O6 ? ? ? 1_555 A U 45 N3 ? ? A G 36 A U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 37 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 37 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 37 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 38 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 38 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 38 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 38 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 38 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 38 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 39 N2 ? ? ? 1_555 A A 42 N7 ? ? A G 39 A A 42 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 70 N2 ? ? A C 53 A G 70 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog60 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 70 N1 ? ? A C 53 A G 70 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog61 hydrog ? ? A U 54 N3 ? ? ? 1_555 A U 69 O2 ? ? A U 54 A U 69 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog62 hydrog ? ? A U 54 O4 ? ? ? 1_555 A U 69 N3 ? ? A U 54 A U 69 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog63 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 68 N1 ? ? A U 55 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 55 O4 ? ? ? 1_555 A A 68 N6 ? ? A U 55 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 56 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 56 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 56 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 57 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 57 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 57 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 58 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 58 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 58 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 58 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 59 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 59 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 59 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 59 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 59 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 59 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 60 N2 ? ? ? 1_555 A A 63 N7 ? ? A G 60 A A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog77 hydrog ? ? B GDP 1 N1 ? ? ? 1_555 B C 80 N3 ? ? M GDP 1 M C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B GDP 1 N2 ? ? ? 1_555 B C 80 O2 ? ? M GDP 1 M C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B GDP 1 O6 ? ? ? 1_555 B C 80 N4 ? ? M GDP 1 M C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 79 N3 ? ? M G 2 M C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 79 O2 ? ? M G 2 M C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 79 N4 ? ? M G 2 M C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 78 N3 ? ? M A 3 M U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 78 O4 ? ? M A 3 M U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B U 4 N3 ? ? ? 1_555 B A 77 N1 ? ? M U 4 M A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B U 4 O4 ? ? ? 1_555 B A 77 N6 ? ? M U 4 M A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 76 N3 ? ? M G 5 M C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 76 O2 ? ? M G 5 M C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 76 N4 ? ? M G 5 M C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 75 N3 ? ? M A 6 M U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 6 N6 ? ? ? 1_555 B U 75 O4 ? ? M A 6 M U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B A 9 N3 ? ? ? 1_555 B G 25 N2 ? ? M A 9 M G 25 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog93 hydrog ? ? B A 10 N6 ? ? ? 1_555 B U 26 O4 ? ? M A 10 M U 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog94 hydrog ? ? B A 10 N7 ? ? ? 1_555 B U 26 N3 ? ? M A 10 M U 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog95 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 48 N2 ? ? M C 12 M G 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog96 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 48 N1 ? ? M C 12 M G 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog97 hydrog ? ? B A 13 N1 ? ? ? 1_555 B U 29 N3 ? ? M A 13 M U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B A 13 N6 ? ? ? 1_555 B U 29 O4 ? ? M A 13 M U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 28 N1 ? ? M C 14 M G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 28 O6 ? ? M C 14 M G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 28 N2 ? ? M C 14 M G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B A 16 N1 ? ? ? 1_555 B U 35 N3 ? ? M A 16 M U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B A 16 N6 ? ? ? 1_555 B U 35 O4 ? ? M A 16 M U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 17 N3 ? ? ? 1_555 B A 34 N1 ? ? M U 17 M A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B U 17 O4 ? ? ? 1_555 B A 34 N6 ? ? M U 17 M A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B U 18 N3 ? ? ? 1_555 B G 33 O6 ? ? M U 18 M G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog107 hydrog ? ? B U 18 O2 ? ? ? 1_555 B G 33 N1 ? ? M U 18 M G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog108 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 32 N1 ? ? M C 19 M G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 32 O6 ? ? M C 19 M G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 32 N2 ? ? M C 19 M G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B G 20 N1 ? ? ? 1_555 B C 31 N3 ? ? M G 20 M C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B G 20 N2 ? ? ? 1_555 B C 31 O2 ? ? M G 20 M C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 20 O6 ? ? ? 1_555 B C 31 N4 ? ? M G 20 M C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 21 N1 ? ? ? 1_555 B C 30 N3 ? ? M G 21 M C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 21 N2 ? ? ? 1_555 B C 30 O2 ? ? M G 21 M C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 30 N4 ? ? M G 21 M C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 27 N7 ? ? M U 22 M A 27 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog118 hydrog ? ? B U 22 O2 ? ? ? 1_555 B A 27 N6 ? ? M U 22 M A 27 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog119 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 73 N3 ? ? M G 24 M C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 73 O2 ? ? M G 24 M C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 73 N4 ? ? M G 24 M C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 72 N3 ? ? M G 25 M C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 72 O2 ? ? M G 25 M C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 72 N4 ? ? M G 25 M C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B A 27 N1 ? ? ? 1_555 B U 49 N3 ? ? M A 27 M U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B A 27 N6 ? ? ? 1_555 B U 49 O4 ? ? M A 27 M U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 36 N1 ? ? ? 1_555 B U 45 O2 ? ? M G 36 M U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog128 hydrog ? ? B G 36 O6 ? ? ? 1_555 B U 45 N3 ? ? M G 36 M U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog129 hydrog ? ? B C 37 N3 ? ? ? 1_555 B G 44 N1 ? ? M C 37 M G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B C 37 N4 ? ? ? 1_555 B G 44 O6 ? ? M C 37 M G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B C 37 O2 ? ? ? 1_555 B G 44 N2 ? ? M C 37 M G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B C 38 N3 ? ? ? 1_555 B G 43 N1 ? ? M C 38 M G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B C 38 N4 ? ? ? 1_555 B G 43 O6 ? ? M C 38 M G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B C 38 O2 ? ? ? 1_555 B G 43 N2 ? ? M C 38 M G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B G 39 N2 ? ? ? 1_555 B A 42 N7 ? ? M G 39 M A 42 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog136 hydrog ? ? B C 53 N3 ? ? ? 1_555 B G 70 N1 ? ? M C 53 M G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B C 53 N4 ? ? ? 1_555 B G 70 O6 ? ? M C 53 M G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B C 53 O2 ? ? ? 1_555 B G 70 N2 ? ? M C 53 M G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B U 54 N3 ? ? ? 1_555 B U 69 O2 ? ? M U 54 M U 69 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog140 hydrog ? ? B U 54 O4 ? ? ? 1_555 B U 69 N3 ? ? M U 54 M U 69 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog141 hydrog ? ? B U 55 N3 ? ? ? 1_555 B A 68 N1 ? ? M U 55 M A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B U 55 O4 ? ? ? 1_555 B A 68 N6 ? ? M U 55 M A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B C 56 N3 ? ? ? 1_555 B G 67 N1 ? ? M C 56 M G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B C 56 N4 ? ? ? 1_555 B G 67 O6 ? ? M C 56 M G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B C 56 O2 ? ? ? 1_555 B G 67 N2 ? ? M C 56 M G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B C 57 N3 ? ? ? 1_555 B G 66 N1 ? ? M C 57 M G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B C 57 N4 ? ? ? 1_555 B G 66 O6 ? ? M C 57 M G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B C 57 O2 ? ? ? 1_555 B G 66 N2 ? ? M C 57 M G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B A 58 N1 ? ? ? 1_555 B U 65 N3 ? ? M A 58 M U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? B A 58 N6 ? ? ? 1_555 B U 65 O4 ? ? M A 58 M U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? B C 59 N3 ? ? ? 1_555 B G 64 N1 ? ? M C 59 M G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B C 59 N4 ? ? ? 1_555 B G 64 O6 ? ? M C 59 M G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? B C 59 O2 ? ? ? 1_555 B G 64 N2 ? ? M C 59 M G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? B G 60 N2 ? ? ? 1_555 B A 63 N7 ? ? M G 60 M A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? N IRI . ? M IRI 105 ? 2_766 IR ? I IRI . ? A IRI 107 ? 1_555 N1 ? I IRI . ? A IRI 107 ? 1_555 51.2 ? 2 N3 ? N IRI . ? M IRI 105 ? 2_766 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? I IRI . ? A IRI 107 ? 1_555 87.3 ? 3 N1 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? I IRI . ? A IRI 107 ? 1_555 82.7 ? 4 N3 ? N IRI . ? M IRI 105 ? 2_766 IR ? I IRI . ? A IRI 107 ? 1_555 N3 ? I IRI . ? A IRI 107 ? 1_555 132.0 ? 5 N1 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N3 ? I IRI . ? A IRI 107 ? 1_555 151.9 ? 6 N2 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N3 ? I IRI . ? A IRI 107 ? 1_555 70.3 ? 7 N3 ? N IRI . ? M IRI 105 ? 2_766 IR ? I IRI . ? A IRI 107 ? 1_555 N4 ? I IRI . ? A IRI 107 ? 1_555 95.9 ? 8 N1 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N4 ? I IRI . ? A IRI 107 ? 1_555 88.3 ? 9 N2 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N4 ? I IRI . ? A IRI 107 ? 1_555 165.5 ? 10 N3 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N4 ? I IRI . ? A IRI 107 ? 1_555 116.4 ? 11 N3 ? N IRI . ? M IRI 105 ? 2_766 IR ? I IRI . ? A IRI 107 ? 1_555 N5 ? I IRI . ? A IRI 107 ? 1_555 53.4 ? 12 N1 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N5 ? I IRI . ? A IRI 107 ? 1_555 104.7 ? 13 N2 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N5 ? I IRI . ? A IRI 107 ? 1_555 95.7 ? 14 N3 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N5 ? I IRI . ? A IRI 107 ? 1_555 86.2 ? 15 N4 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N5 ? I IRI . ? A IRI 107 ? 1_555 97.5 ? 16 N3 ? N IRI . ? M IRI 105 ? 2_766 IR ? I IRI . ? A IRI 107 ? 1_555 N6 ? I IRI . ? A IRI 107 ? 1_555 147.8 ? 17 N1 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N6 ? I IRI . ? A IRI 107 ? 1_555 97.4 ? 18 N2 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N6 ? I IRI . ? A IRI 107 ? 1_555 80.8 ? 19 N3 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N6 ? I IRI . ? A IRI 107 ? 1_555 71.3 ? 20 N4 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N6 ? I IRI . ? A IRI 107 ? 1_555 89.1 ? 21 N5 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N6 ? I IRI . ? A IRI 107 ? 1_555 157.1 ? 22 N3 ? N IRI . ? M IRI 105 ? 2_766 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? N IRI . ? M IRI 105 ? 2_766 101.7 ? 23 N1 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? N IRI . ? M IRI 105 ? 2_766 53.0 ? 24 N2 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? N IRI . ? M IRI 105 ? 2_766 100.6 ? 25 N3 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? N IRI . ? M IRI 105 ? 2_766 123.5 ? 26 N4 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? N IRI . ? M IRI 105 ? 2_766 64.9 ? 27 N5 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? N IRI . ? M IRI 105 ? 2_766 149.6 ? 28 N6 ? I IRI . ? A IRI 107 ? 1_555 IR ? I IRI . ? A IRI 107 ? 1_555 N2 ? N IRI . ? M IRI 105 ? 2_766 52.3 ? # _pdbx_entry_details.entry_id 9EBP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A U 75 ? ? HN12 M IRI 104 ? ? 1.26 2 1 O4 A U 35 ? ? HN33 A IRI 105 ? ? 1.33 3 1 OP1 M U 26 ? ? HN12 M IRI 102 ? ? 1.35 4 1 OP1 A A 41 ? ? HN63 A IRI 102 ? ? 1.56 5 1 O6 A G 36 ? ? HN21 A IRI 105 ? ? 1.56 6 1 N7 A G 60 ? ? HN12 A IRI 107 ? ? 1.56 7 1 OP2 A U 55 ? ? O A HOH 201 ? ? 1.80 8 1 "O3'" M GDP 1 ? ? O M HOH 201 ? ? 1.81 9 1 OP2 M A 68 ? ? O M HOH 202 ? ? 1.85 10 1 OP1 A G 25 ? ? O A HOH 202 ? ? 1.89 11 1 "O3'" M A 10 ? ? O M HOH 203 ? ? 1.93 12 1 "O5'" M A 11 ? ? O M HOH 203 ? ? 2.03 13 1 OP2 A A 42 ? ? O A HOH 203 ? ? 2.03 14 1 O1A M GDP 1 ? ? O M HOH 204 ? ? 2.04 15 1 N7 A G 60 ? ? N1 A IRI 107 ? ? 2.06 16 1 OP1 M U 26 ? ? N1 M IRI 102 ? ? 2.07 17 1 O4 A U 18 ? ? N5 A IRI 103 ? ? 2.09 18 1 OP2 A U 75 ? ? N1 M IRI 104 ? ? 2.10 19 1 O4 A U 35 ? ? N3 A IRI 105 ? ? 2.11 20 1 OP1 A A 40 ? ? O A HOH 204 ? ? 2.11 21 1 O6 A G 36 ? ? N2 A IRI 105 ? ? 2.13 22 1 "O2'" A U 29 ? ? O A HOH 205 ? ? 2.14 23 1 C8 M A 11 ? ? O M HOH 203 ? ? 2.15 24 1 "O2'" M U 55 ? ? O M HOH 205 ? ? 2.15 25 1 "O4'" M A 11 ? ? O M HOH 203 ? ? 2.15 26 1 N1 A GDP 1 ? ? N3 A C 80 ? ? 2.16 27 1 O2 A C 53 ? ? N2 A G 70 ? ? 2.16 28 1 O A HOH 211 ? ? O A HOH 214 ? ? 2.17 29 1 OP2 A A 8 ? ? O A HOH 206 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N2 A IRI 107 ? ? 1_555 IR M IRI 105 ? ? 2_766 1.11 2 1 HN63 A IRI 107 ? ? 1_555 HN21 M IRI 105 ? ? 2_766 1.24 3 1 N5 A IRI 107 ? ? 1_555 HN32 M IRI 105 ? ? 2_766 1.27 4 1 IR A IRI 107 ? ? 1_555 IR M IRI 105 ? ? 2_766 1.29 5 1 IR A IRI 107 ? ? 1_555 N5 M IRI 105 ? ? 2_766 1.38 6 1 N1 A IRI 107 ? ? 1_555 HN33 M IRI 105 ? ? 2_766 1.41 7 1 N3 A IRI 107 ? ? 1_555 N5 M IRI 105 ? ? 2_766 1.93 8 1 N1 A IRI 107 ? ? 1_555 N3 M IRI 105 ? ? 2_766 1.98 9 1 N6 A IRI 107 ? ? 1_555 N2 M IRI 105 ? ? 2_766 1.98 10 1 N2 A IRI 107 ? ? 1_555 N4 M IRI 105 ? ? 2_766 2.03 11 1 N1 A IRI 107 ? ? 1_555 N2 M IRI 105 ? ? 2_766 2.05 12 1 N5 A IRI 107 ? ? 1_555 N3 M IRI 105 ? ? 2_766 2.10 13 1 N2 A IRI 107 ? ? 1_555 N1 M IRI 105 ? ? 2_766 2.18 14 1 N5 A IRI 107 ? ? 1_555 N5 M IRI 105 ? ? 2_766 2.18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GDP PB P N N 111 GDP O1B O N N 112 GDP O2B O N N 113 GDP O3B O N N 114 GDP O3A O N N 115 GDP PA P N N 116 GDP O1A O N N 117 GDP O2A O N N 118 GDP "O5'" O N N 119 GDP "C5'" C N N 120 GDP "C4'" C N R 121 GDP "O4'" O N N 122 GDP "C3'" C N S 123 GDP "O3'" O N N 124 GDP "C2'" C N R 125 GDP "O2'" O N N 126 GDP "C1'" C N R 127 GDP N9 N Y N 128 GDP C8 C Y N 129 GDP N7 N Y N 130 GDP C5 C Y N 131 GDP C6 C N N 132 GDP O6 O N N 133 GDP N1 N N N 134 GDP C2 C N N 135 GDP N2 N N N 136 GDP N3 N N N 137 GDP C4 C Y N 138 GDP HOB2 H N N 139 GDP HOB3 H N N 140 GDP HOA2 H N N 141 GDP "H5'" H N N 142 GDP "H5''" H N N 143 GDP "H4'" H N N 144 GDP "H3'" H N N 145 GDP "HO3'" H N N 146 GDP "H2'" H N N 147 GDP "HO2'" H N N 148 GDP "H1'" H N N 149 GDP H8 H N N 150 GDP HN1 H N N 151 GDP HN21 H N N 152 GDP HN22 H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 IRI IR IR N N 157 IRI N1 N N N 158 IRI N2 N N N 159 IRI N3 N N N 160 IRI N4 N N N 161 IRI N5 N N N 162 IRI N6 N N N 163 IRI HN11 H N N 164 IRI HN12 H N N 165 IRI HN13 H N N 166 IRI HN21 H N N 167 IRI HN22 H N N 168 IRI HN23 H N N 169 IRI HN31 H N N 170 IRI HN32 H N N 171 IRI HN33 H N N 172 IRI HN41 H N N 173 IRI HN42 H N N 174 IRI HN43 H N N 175 IRI HN51 H N N 176 IRI HN52 H N N 177 IRI HN53 H N N 178 IRI HN61 H N N 179 IRI HN62 H N N 180 IRI HN63 H N N 181 LUM N1 N Y N 182 LUM C2 C Y N 183 LUM C10 C Y N 184 LUM O2 O N N 185 LUM N3 N Y N 186 LUM C4 C Y N 187 LUM O4 O N N 188 LUM C4A C Y N 189 LUM N5 N Y N 190 LUM C5A C Y N 191 LUM C6 C Y N 192 LUM C9A C Y N 193 LUM C7 C Y N 194 LUM C7M C N N 195 LUM C8 C Y N 196 LUM C8M C N N 197 LUM C9 C Y N 198 LUM N10 N Y N 199 LUM HN1 H N N 200 LUM HN3 H N N 201 LUM HC6 H N N 202 LUM H7M1 H N N 203 LUM H7M2 H N N 204 LUM H7M3 H N N 205 LUM H8M1 H N N 206 LUM H8M2 H N N 207 LUM H8M3 H N N 208 LUM HC9 H N N 209 U OP3 O N N 210 U P P N N 211 U OP1 O N N 212 U OP2 O N N 213 U "O5'" O N N 214 U "C5'" C N N 215 U "C4'" C N R 216 U "O4'" O N N 217 U "C3'" C N S 218 U "O3'" O N N 219 U "C2'" C N R 220 U "O2'" O N N 221 U "C1'" C N R 222 U N1 N N N 223 U C2 C N N 224 U O2 O N N 225 U N3 N N N 226 U C4 C N N 227 U O4 O N N 228 U C5 C N N 229 U C6 C N N 230 U HOP3 H N N 231 U HOP2 H N N 232 U "H5'" H N N 233 U "H5''" H N N 234 U "H4'" H N N 235 U "H3'" H N N 236 U "HO3'" H N N 237 U "H2'" H N N 238 U "HO2'" H N N 239 U "H1'" H N N 240 U H3 H N N 241 U H5 H N N 242 U H6 H N N 243 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GDP PB O1B doub N N 116 GDP PB O2B sing N N 117 GDP PB O3B sing N N 118 GDP PB O3A sing N N 119 GDP O2B HOB2 sing N N 120 GDP O3B HOB3 sing N N 121 GDP O3A PA sing N N 122 GDP PA O1A doub N N 123 GDP PA O2A sing N N 124 GDP PA "O5'" sing N N 125 GDP O2A HOA2 sing N N 126 GDP "O5'" "C5'" sing N N 127 GDP "C5'" "C4'" sing N N 128 GDP "C5'" "H5'" sing N N 129 GDP "C5'" "H5''" sing N N 130 GDP "C4'" "O4'" sing N N 131 GDP "C4'" "C3'" sing N N 132 GDP "C4'" "H4'" sing N N 133 GDP "O4'" "C1'" sing N N 134 GDP "C3'" "O3'" sing N N 135 GDP "C3'" "C2'" sing N N 136 GDP "C3'" "H3'" sing N N 137 GDP "O3'" "HO3'" sing N N 138 GDP "C2'" "O2'" sing N N 139 GDP "C2'" "C1'" sing N N 140 GDP "C2'" "H2'" sing N N 141 GDP "O2'" "HO2'" sing N N 142 GDP "C1'" N9 sing N N 143 GDP "C1'" "H1'" sing N N 144 GDP N9 C8 sing Y N 145 GDP N9 C4 sing Y N 146 GDP C8 N7 doub Y N 147 GDP C8 H8 sing N N 148 GDP N7 C5 sing Y N 149 GDP C5 C6 sing N N 150 GDP C5 C4 doub Y N 151 GDP C6 O6 doub N N 152 GDP C6 N1 sing N N 153 GDP N1 C2 sing N N 154 GDP N1 HN1 sing N N 155 GDP C2 N2 sing N N 156 GDP C2 N3 doub N N 157 GDP N2 HN21 sing N N 158 GDP N2 HN22 sing N N 159 GDP N3 C4 sing N N 160 HOH O H1 sing N N 161 HOH O H2 sing N N 162 IRI IR N1 sing N N 163 IRI IR N2 sing N N 164 IRI IR N3 sing N N 165 IRI IR N4 sing N N 166 IRI IR N5 sing N N 167 IRI IR N6 sing N N 168 IRI N1 HN11 sing N N 169 IRI N1 HN12 sing N N 170 IRI N1 HN13 sing N N 171 IRI N2 HN21 sing N N 172 IRI N2 HN22 sing N N 173 IRI N2 HN23 sing N N 174 IRI N3 HN31 sing N N 175 IRI N3 HN32 sing N N 176 IRI N3 HN33 sing N N 177 IRI N4 HN41 sing N N 178 IRI N4 HN42 sing N N 179 IRI N4 HN43 sing N N 180 IRI N5 HN51 sing N N 181 IRI N5 HN52 sing N N 182 IRI N5 HN53 sing N N 183 IRI N6 HN61 sing N N 184 IRI N6 HN62 sing N N 185 IRI N6 HN63 sing N N 186 LUM N1 C2 sing Y N 187 LUM N1 C10 sing Y N 188 LUM N1 HN1 sing N N 189 LUM C2 O2 doub N N 190 LUM C2 N3 sing Y N 191 LUM C10 C4A doub Y N 192 LUM C10 N10 sing Y N 193 LUM N3 C4 sing Y N 194 LUM N3 HN3 sing N N 195 LUM C4 O4 doub N N 196 LUM C4 C4A sing Y N 197 LUM C4A N5 sing Y N 198 LUM N5 C5A doub Y N 199 LUM C5A C6 sing Y N 200 LUM C5A C9A sing Y N 201 LUM C6 C7 doub Y N 202 LUM C6 HC6 sing N N 203 LUM C9A C9 sing Y N 204 LUM C9A N10 doub Y N 205 LUM C7 C7M sing N N 206 LUM C7 C8 sing Y N 207 LUM C7M H7M1 sing N N 208 LUM C7M H7M2 sing N N 209 LUM C7M H7M3 sing N N 210 LUM C8 C8M sing N N 211 LUM C8 C9 doub Y N 212 LUM C8M H8M1 sing N N 213 LUM C8M H8M2 sing N N 214 LUM C8M H8M3 sing N N 215 LUM C9 HC9 sing N N 216 U OP3 P sing N N 217 U OP3 HOP3 sing N N 218 U P OP1 doub N N 219 U P OP2 sing N N 220 U P "O5'" sing N N 221 U OP2 HOP2 sing N N 222 U "O5'" "C5'" sing N N 223 U "C5'" "C4'" sing N N 224 U "C5'" "H5'" sing N N 225 U "C5'" "H5''" sing N N 226 U "C4'" "O4'" sing N N 227 U "C4'" "C3'" sing N N 228 U "C4'" "H4'" sing N N 229 U "O4'" "C1'" sing N N 230 U "C3'" "O3'" sing N N 231 U "C3'" "C2'" sing N N 232 U "C3'" "H3'" sing N N 233 U "O3'" "HO3'" sing N N 234 U "C2'" "O2'" sing N N 235 U "C2'" "C1'" sing N N 236 U "C2'" "H2'" sing N N 237 U "O2'" "HO2'" sing N N 238 U "C1'" N1 sing N N 239 U "C1'" "H1'" sing N N 240 U N1 C2 sing N N 241 U N1 C6 sing N N 242 U C2 O2 doub N N 243 U C2 N3 sing N N 244 U N3 C4 sing N N 245 U N3 H3 sing N N 246 U C4 O4 doub N N 247 U C4 C5 sing N N 248 U C5 C6 doub N N 249 U C5 H5 sing N N 250 U C6 H6 sing N N 251 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9EBP 'double helix' 9EBP 'a-form double helix' 9EBP tetraloop 9EBP 'mismatched base pair' 9EBP 'triple helix' 9EBP 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GDP 1 1_555 A C 80 1_555 0.358 -0.933 -0.678 -9.956 -14.511 -22.879 1 A_GDP1:C80_A A 1 ? A 80 ? 22 1 1 A G 2 1_555 A C 79 1_555 0.146 -0.040 -0.477 -12.408 -2.684 6.151 2 A_G2:C79_A A 2 ? A 79 ? 19 1 1 A A 3 1_555 A U 78 1_555 0.106 0.020 -0.285 -10.685 -14.698 -1.442 3 A_A3:U78_A A 3 ? A 78 ? 20 1 1 A U 4 1_555 A A 77 1_555 -0.010 -0.269 -0.310 1.978 -12.326 0.034 4 A_U4:A77_A A 4 ? A 77 ? 20 1 1 A G 5 1_555 A C 76 1_555 -0.620 -0.203 -0.023 -1.062 -10.914 5.129 5 A_G5:C76_A A 5 ? A 76 ? 19 1 1 A A 6 1_555 A U 75 1_555 -0.943 0.091 0.686 17.408 -10.560 6.870 6 A_A6:U75_A A 6 ? A 75 ? 20 1 1 A C 12 1_555 A G 48 1_555 -0.845 3.152 -0.347 21.502 -4.859 178.525 7 A_C12:G48_A A 12 ? A 48 ? ? ? 1 A A 13 1_555 A U 29 1_555 -0.625 -0.052 -0.433 -4.938 12.156 -10.207 8 A_A13:U29_A A 13 ? A 29 ? 20 1 1 A C 14 1_555 A G 28 1_555 0.229 -0.370 0.093 13.688 -4.946 -1.093 9 A_C14:G28_A A 14 ? A 28 ? 19 1 1 A G 24 1_555 A C 73 1_555 -0.176 0.022 0.505 8.353 -10.631 -2.625 10 A_G24:C73_A A 24 ? A 73 ? 19 1 1 A G 25 1_555 A C 72 1_555 0.148 -0.093 -0.434 -8.834 -18.457 -0.835 11 A_G25:C72_A A 25 ? A 72 ? 19 1 1 A U 26 1_555 A A 10 1_555 -0.188 3.211 -0.573 -2.819 -11.400 -66.270 12 A_U26:A10_A A 26 ? A 10 ? 23 3 1 A A 27 1_555 A U 49 1_555 0.587 -0.174 0.985 28.728 6.090 -9.517 13 A_A27:U49_A A 27 ? A 49 ? 20 1 1 A G 21 1_555 A C 30 1_555 -0.007 -0.206 -0.569 -15.229 -20.175 -3.733 14 A_G21:C30_A A 21 ? A 30 ? 19 1 1 A G 20 1_555 A C 31 1_555 -0.013 -0.036 0.084 6.396 -7.547 3.103 15 A_G20:C31_A A 20 ? A 31 ? 19 1 1 A C 19 1_555 A G 32 1_555 0.303 -0.303 0.125 2.234 -3.947 -2.521 16 A_C19:G32_A A 19 ? A 32 ? 19 1 1 A U 18 1_555 A G 33 1_555 2.662 -0.747 -0.272 4.242 -18.544 3.916 17 A_U18:G33_A A 18 ? A 33 ? 28 1 1 A U 17 1_555 A A 34 1_555 -0.113 -0.059 0.762 -2.189 -20.143 2.872 18 A_U17:A34_A A 17 ? A 34 ? 20 1 1 A A 16 1_555 A U 35 1_555 0.103 -0.077 0.493 11.070 -0.062 10.359 19 A_A16:U35_A A 16 ? A 35 ? 20 1 1 A U 45 1_555 A G 36 1_555 3.114 -0.319 0.478 -12.348 -7.174 3.652 20 A_U45:G36_A A 45 ? A 36 ? 28 1 1 A G 44 1_555 A C 37 1_555 -0.660 -0.201 -0.032 -6.841 -13.124 -3.001 21 A_G44:C37_A A 44 ? A 37 ? 19 1 1 A G 43 1_555 A C 38 1_555 -0.393 -0.191 -0.179 -5.355 -12.064 -0.962 22 A_G43:C38_A A 43 ? A 38 ? 19 1 1 A A 42 1_555 A G 39 1_555 -7.821 -5.087 0.998 -5.467 -22.560 -41.227 23 A_A42:G39_A A 42 ? A 39 ? ? ? 1 A C 53 1_555 A G 70 1_555 0.584 -0.105 0.581 20.961 -18.985 12.312 24 A_C53:G70_A A 53 ? A 70 ? 22 1 1 A U 54 1_555 A U 69 1_555 -1.249 -1.470 0.969 5.722 -31.611 2.756 25 A_U54:U69_A A 54 ? A 69 ? 16 1 1 A U 55 1_555 A A 68 1_555 -0.355 0.013 -0.017 -1.877 -22.553 -5.300 26 A_U55:A68_A A 55 ? A 68 ? 20 1 1 A C 56 1_555 A G 67 1_555 0.626 -0.045 0.150 -1.620 -12.704 2.252 27 A_C56:G67_A A 56 ? A 67 ? 19 1 1 A C 57 1_555 A G 66 1_555 0.117 0.021 0.246 -1.943 -11.247 5.600 28 A_C57:G66_A A 57 ? A 66 ? 19 1 1 A A 58 1_555 A U 65 1_555 0.132 -0.080 -0.518 -7.288 -8.284 3.134 29 A_A58:U65_A A 58 ? A 65 ? 20 1 1 A C 59 1_555 A G 64 1_555 0.226 -0.040 -0.044 3.977 3.523 -3.830 30 A_C59:G64_A A 59 ? A 64 ? 19 1 1 A G 60 1_555 A A 63 1_555 7.505 -5.120 1.674 13.126 -0.948 -42.483 31 A_G60:A63_A A 60 ? A 63 ? ? ? 1 B GDP 1 1_555 B C 80 1_555 -0.218 -0.225 0.119 0.645 0.203 -1.388 32 M_GDP1:C80_M M 1 ? M 80 ? 19 1 1 B G 2 1_555 B C 79 1_555 0.037 -0.101 -0.122 -8.265 -14.371 3.904 33 M_G2:C79_M M 2 ? M 79 ? 19 1 1 B A 3 1_555 B U 78 1_555 -0.137 -0.078 -0.251 -20.053 -18.213 3.274 34 M_A3:U78_M M 3 ? M 78 ? 20 1 1 B U 4 1_555 B A 77 1_555 -0.190 -0.134 -0.136 -6.990 -12.315 0.694 35 M_U4:A77_M M 4 ? M 77 ? 20 1 1 B G 5 1_555 B C 76 1_555 -0.738 0.007 -0.221 -7.296 -9.212 4.793 36 M_G5:C76_M M 5 ? M 76 ? 19 1 1 B A 6 1_555 B U 75 1_555 0.418 -0.223 0.376 13.830 -7.189 3.710 37 M_A6:U75_M M 6 ? M 75 ? 20 1 1 B C 12 1_555 B G 48 1_555 0.005 -4.288 0.789 -32.355 11.292 -171.060 38 M_C12:G48_M M 12 ? M 48 ? 22 2 1 B A 13 1_555 B U 29 1_555 -0.715 0.014 -0.568 -8.562 -1.418 -1.693 39 M_A13:U29_M M 13 ? M 29 ? 20 1 1 B C 14 1_555 B G 28 1_555 -0.149 -0.229 0.197 10.476 -18.278 -1.166 40 M_C14:G28_M M 14 ? M 28 ? 19 1 1 B G 24 1_555 B C 73 1_555 -0.116 -0.146 0.336 13.070 -12.620 -8.651 41 M_G24:C73_M M 24 ? M 73 ? 19 1 1 B G 25 1_555 B C 72 1_555 0.152 -0.181 -0.195 -5.751 -15.528 -2.500 42 M_G25:C72_M M 25 ? M 72 ? 19 1 1 B U 26 1_555 B A 10 1_555 -0.772 3.653 -0.360 2.920 -19.785 -70.670 43 M_U26:A10_M M 26 ? M 10 ? 23 3 1 B A 27 1_555 B U 49 1_555 0.927 0.108 0.619 27.197 -14.489 6.847 44 M_A27:U49_M M 27 ? M 49 ? 20 1 1 B G 21 1_555 B C 30 1_555 0.141 -0.289 0.463 -10.296 -16.186 -2.226 45 M_G21:C30_M M 21 ? M 30 ? 19 1 1 B G 20 1_555 B C 31 1_555 -0.181 -0.092 0.239 1.465 -12.898 -0.398 46 M_G20:C31_M M 20 ? M 31 ? 19 1 1 B C 19 1_555 B G 32 1_555 0.448 -0.092 -0.034 -5.583 -7.146 1.943 47 M_C19:G32_M M 19 ? M 32 ? 19 1 1 B U 18 1_555 B G 33 1_555 2.650 -0.696 0.449 -11.841 -1.070 -3.435 48 M_U18:G33_M M 18 ? M 33 ? 28 1 1 B U 17 1_555 B A 34 1_555 0.056 -0.272 -0.101 -1.929 -2.983 0.533 49 M_U17:A34_M M 17 ? M 34 ? 20 1 1 B A 16 1_555 B U 35 1_555 0.263 0.155 0.239 -1.188 -1.493 -3.425 50 M_A16:U35_M M 16 ? M 35 ? 20 1 1 B U 45 1_555 B G 36 1_555 2.742 -0.733 0.347 -12.146 -3.670 -2.824 51 M_U45:G36_M M 45 ? M 36 ? 28 1 1 B G 44 1_555 B C 37 1_555 0.103 -0.034 -0.302 -12.785 -18.389 0.650 52 M_G44:C37_M M 44 ? M 37 ? 19 1 1 B G 43 1_555 B C 38 1_555 0.056 -0.101 -0.155 -2.352 -1.588 -0.581 53 M_G43:C38_M M 43 ? M 38 ? 19 1 1 B A 42 1_555 B G 39 1_555 -6.935 -5.027 1.268 -13.519 0.404 -18.776 54 M_A42:G39_M M 42 ? M 39 ? ? ? 1 B C 53 1_555 B G 70 1_555 0.346 0.038 0.304 23.787 -8.215 10.974 55 M_C53:G70_M M 53 ? M 70 ? 19 1 1 B U 54 1_555 B U 69 1_555 -2.207 -1.856 0.101 -1.022 -15.946 4.543 56 M_U54:U69_M M 54 ? M 69 ? 16 1 1 B U 55 1_555 B A 68 1_555 -0.717 -0.190 -0.138 -4.195 -6.967 0.104 57 M_U55:A68_M M 55 ? M 68 ? 20 1 1 B C 56 1_555 B G 67 1_555 -0.159 0.095 -0.009 -0.144 -8.755 9.511 58 M_C56:G67_M M 56 ? M 67 ? 19 1 1 B C 57 1_555 B G 66 1_555 -0.058 -0.054 -0.162 3.336 -10.795 1.552 59 M_C57:G66_M M 57 ? M 66 ? 19 1 1 B A 58 1_555 B U 65 1_555 -0.116 -0.187 0.230 4.225 -6.004 -1.499 60 M_A58:U65_M M 58 ? M 65 ? 20 1 1 B C 59 1_555 B G 64 1_555 0.205 -0.244 -0.340 4.907 -4.923 -4.195 61 M_C59:G64_M M 59 ? M 64 ? 19 1 1 B G 60 1_555 B A 63 1_555 7.240 -5.237 0.962 -5.142 -21.668 -28.443 62 M_G60:A63_M M 60 ? M 63 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GDP 1 1_555 A C 80 1_555 A G 2 1_555 A C 79 1_555 0.590 -2.646 3.624 -0.721 3.442 23.827 -7.499 -1.657 3.196 8.279 1.735 24.081 1 AA_GDP1G2:C79C80_AA A 1 ? A 80 ? A 2 ? A 79 ? 1 A G 2 1_555 A C 79 1_555 A A 3 1_555 A U 78 1_555 0.072 -2.160 3.382 1.713 6.180 26.580 -6.048 0.258 2.816 13.197 -3.658 27.329 2 AA_G2A3:U78C79_AA A 2 ? A 79 ? A 3 ? A 78 ? 1 A A 3 1_555 A U 78 1_555 A U 4 1_555 A A 77 1_555 -0.200 -1.165 2.832 0.567 3.701 34.597 -2.427 0.408 2.693 6.201 -0.951 34.793 3 AA_A3U4:A77U78_AA A 3 ? A 78 ? A 4 ? A 77 ? 1 A U 4 1_555 A A 77 1_555 A G 5 1_555 A C 76 1_555 0.343 -1.606 3.352 -1.161 10.724 26.304 -5.571 -0.947 2.500 22.405 2.426 28.393 4 AA_U4G5:C76A77_AA A 4 ? A 77 ? A 5 ? A 76 ? 1 A G 5 1_555 A C 76 1_555 A A 6 1_555 A U 75 1_555 0.607 -1.446 2.678 -3.382 1.324 28.539 -3.149 -1.826 2.522 2.673 6.824 28.765 5 AA_G5A6:U75C76_AA A 5 ? A 76 ? A 6 ? A 75 ? 1 A C 12 1_555 A G 48 1_555 A A 13 1_555 A U 29 1_555 3.751 2.301 3.299 4.299 -1.338 140.162 1.231 -1.971 3.340 -0.712 -2.286 140.194 6 AA_C12A13:U29G48_AA A 12 ? A 48 ? A 13 ? A 29 ? 1 A A 13 1_555 A U 29 1_555 A C 14 1_555 A G 28 1_555 0.711 -2.115 2.999 -8.445 7.653 26.945 -5.524 -2.878 2.025 15.570 17.181 29.215 7 AA_A13C14:G28U29_AA A 13 ? A 29 ? A 14 ? A 28 ? 1 A G 24 1_555 A C 73 1_555 A G 25 1_555 A C 72 1_555 0.574 -1.928 3.772 6.614 6.314 34.457 -4.180 0.138 3.425 10.433 -10.929 35.614 8 AA_G24G25:C72C73_AA A 24 ? A 73 ? A 25 ? A 72 ? 1 A G 25 1_555 A C 72 1_555 A U 26 1_555 A A 10 1_555 -0.105 -3.105 2.954 -0.436 2.643 63.758 -3.039 0.082 2.837 2.501 0.412 63.808 9 AA_G25U26:A10C72_AA A 25 ? A 72 ? A 26 ? A 10 ? 1 A U 26 1_555 A A 10 1_555 A A 27 1_555 A U 49 1_555 1.971 -1.282 6.317 -19.527 5.438 -0.739 -2.814 -17.582 2.473 -23.590 -84.711 -20.283 10 AA_U26A27:U49A10_AA A 26 ? A 10 ? A 27 ? A 49 ? 1 A A 27 1_555 A U 49 1_555 A G 21 1_555 A C 30 1_555 5.134 2.218 2.046 -68.152 -159.162 -108.428 -0.208 2.183 4.032 80.175 -34.331 -175.990 11 AA_A27G21:C30U49_AA A 27 ? A 49 ? A 21 ? A 30 ? 1 A G 21 1_555 A C 30 1_555 A G 20 1_555 A C 31 1_555 -0.268 2.152 -3.744 -7.030 -15.342 -34.627 -5.232 0.491 -2.601 24.087 -11.037 -38.407 12 AA_G21G20:C31C30_AA A 21 ? A 30 ? A 20 ? A 31 ? 1 A G 20 1_555 A C 31 1_555 A C 19 1_555 A G 32 1_555 -0.473 1.546 -2.991 0.333 -8.576 -30.275 -4.219 -0.926 -2.466 16.020 0.621 -31.441 13 AA_G20C19:G32C31_AA A 20 ? A 31 ? A 19 ? A 32 ? 1 A C 19 1_555 A G 32 1_555 A U 18 1_555 A G 33 1_555 1.067 1.949 -3.264 3.984 -8.568 -18.416 -8.804 1.403 -2.313 24.767 11.517 -20.680 14 AA_C19U18:G33G32_AA A 19 ? A 32 ? A 18 ? A 33 ? 1 A U 18 1_555 A G 33 1_555 A U 17 1_555 A A 34 1_555 0.282 0.959 -3.132 -4.790 1.725 -46.354 -1.073 0.741 -3.121 -2.183 -6.063 -46.617 15 AA_U18U17:A34G33_AA A 18 ? A 33 ? A 17 ? A 34 ? 1 A U 17 1_555 A A 34 1_555 A A 16 1_555 A U 35 1_555 0.747 1.245 -3.589 3.446 -0.045 -33.374 -2.165 0.667 -3.644 0.078 5.981 -33.546 16 AA_U17A16:U35A34_AA A 17 ? A 34 ? A 16 ? A 35 ? 1 A A 16 1_555 A U 35 1_555 A U 45 1_555 A G 36 1_555 0.808 0.899 -2.329 -2.256 -11.365 -26.114 -3.504 1.972 -1.721 23.722 -4.708 -28.528 17 AA_A16U45:G36U35_AA A 16 ? A 35 ? A 45 ? A 36 ? 1 A U 45 1_555 A G 36 1_555 A G 44 1_555 A C 37 1_555 -0.380 0.674 -3.592 -1.443 -4.237 -51.769 -1.079 -0.328 -3.539 4.843 -1.649 -51.949 18 AA_U45G44:C37G36_AA A 45 ? A 36 ? A 44 ? A 37 ? 1 A G 44 1_555 A C 37 1_555 A G 43 1_555 A C 38 1_555 -0.172 1.834 -3.337 0.877 -4.998 -31.334 -4.251 -0.472 -3.010 9.178 1.611 -31.733 19 AA_G44G43:C38C37_AA A 44 ? A 37 ? A 43 ? A 38 ? 1 A G 43 1_555 A C 38 1_555 A A 42 1_555 A G 39 1_555 -3.970 1.351 -3.478 1.809 -20.748 -55.358 -2.430 -4.132 -2.738 21.503 1.875 -58.855 20 AA_G43A42:G39C38_AA A 43 ? A 38 ? A 42 ? A 39 ? 1 A C 53 1_555 A G 70 1_555 A U 54 1_555 A U 69 1_555 -0.428 -1.600 3.012 -5.794 10.616 29.293 -4.607 -0.129 2.345 19.953 10.891 31.640 21 AA_C53U54:U69G70_AA A 53 ? A 70 ? A 54 ? A 69 ? 1 A U 54 1_555 A U 69 1_555 A U 55 1_555 A A 68 1_555 -0.549 -1.796 3.221 3.126 3.072 39.812 -2.960 1.144 3.030 4.495 -4.573 40.043 22 AA_U54U55:A68U69_AA A 54 ? A 69 ? A 55 ? A 68 ? 1 A U 55 1_555 A A 68 1_555 A C 56 1_555 A G 67 1_555 -0.414 -1.309 3.100 -3.044 1.954 33.751 -2.537 0.249 3.046 3.353 5.224 33.939 23 AA_U55C56:G67A68_AA A 55 ? A 68 ? A 56 ? A 67 ? 1 A C 56 1_555 A G 67 1_555 A C 57 1_555 A G 66 1_555 -0.124 -1.475 3.225 -1.225 4.458 29.977 -3.677 0.001 2.982 8.555 2.350 30.323 24 AA_C56C57:G66G67_AA A 56 ? A 67 ? A 57 ? A 66 ? 1 A C 57 1_555 A G 66 1_555 A A 58 1_555 A U 65 1_555 -0.226 -1.666 3.256 3.882 13.990 28.299 -5.307 1.041 2.165 26.521 -7.359 31.738 25 AA_C57A58:U65G66_AA A 57 ? A 66 ? A 58 ? A 65 ? 1 A A 58 1_555 A U 65 1_555 A C 59 1_555 A G 64 1_555 -0.012 -1.813 3.068 -4.711 5.883 33.623 -3.881 -0.634 2.699 10.014 8.019 34.434 26 AA_A58C59:G64U65_AA A 58 ? A 65 ? A 59 ? A 64 ? 1 A C 59 1_555 A G 64 1_555 A G 60 1_555 A A 63 1_555 -4.042 -1.622 2.894 0.969 18.347 56.379 -2.405 4.141 2.251 18.872 -0.997 59.063 27 AA_C59G60:A63G64_AA A 59 ? A 64 ? A 60 ? A 63 ? 1 B GDP 1 1_555 B C 80 1_555 B G 2 1_555 B C 79 1_555 0.964 -2.483 3.500 6.985 9.468 27.334 -6.800 -0.436 2.671 18.961 -13.988 29.714 28 MM_GDP1G2:C79C80_MM M 1 ? M 80 ? M 2 ? M 79 ? 1 B G 2 1_555 B C 79 1_555 B A 3 1_555 B U 78 1_555 -0.155 -1.737 3.449 2.561 9.508 30.014 -4.917 0.749 2.761 17.768 -4.785 31.553 29 MM_G2A3:U78C79_MM M 2 ? M 79 ? M 3 ? M 78 ? 1 B A 3 1_555 B U 78 1_555 B U 4 1_555 B A 77 1_555 -0.163 -1.084 2.998 -0.088 7.439 33.111 -2.911 0.267 2.698 12.851 0.153 33.914 30 MM_A3U4:A77U78_MM M 3 ? M 78 ? M 4 ? M 77 ? 1 B U 4 1_555 B A 77 1_555 B G 5 1_555 B C 76 1_555 0.915 -1.330 3.385 1.096 12.743 25.419 -5.492 -1.625 2.483 26.897 -2.312 28.408 31 MM_U4G5:C76A77_MM M 4 ? M 77 ? M 5 ? M 76 ? 1 B G 5 1_555 B C 76 1_555 B A 6 1_555 B U 75 1_555 0.432 -1.237 2.797 -5.036 -4.604 32.564 -1.490 -1.488 2.844 -8.101 8.859 33.252 32 MM_G5A6:U75C76_MM M 5 ? M 76 ? M 6 ? M 75 ? 1 B C 12 1_555 B G 48 1_555 B A 13 1_555 B U 29 1_555 2.224 -2.922 3.717 -7.211 -9.445 -44.850 4.600 2.153 3.369 12.130 -9.259 -46.319 33 MM_C12A13:U29G48_MM M 12 ? M 48 ? M 13 ? M 29 ? 1 B A 13 1_555 B U 29 1_555 B C 14 1_555 B G 28 1_555 0.428 -1.215 2.888 -8.419 7.042 30.612 -3.195 -1.987 2.360 12.831 15.341 32.476 34 MM_A13C14:G28U29_MM M 13 ? M 29 ? M 14 ? M 28 ? 1 B G 24 1_555 B C 73 1_555 B G 25 1_555 B C 72 1_555 0.598 -1.775 3.719 0.817 6.204 38.631 -3.469 -0.786 3.416 9.303 -1.225 39.115 35 MM_G24G25:C72C73_MM M 24 ? M 73 ? M 25 ? M 72 ? 1 B G 25 1_555 B C 72 1_555 B U 26 1_555 B A 10 1_555 -0.834 -3.547 2.833 -3.432 1.764 56.539 -3.822 0.715 2.773 1.860 3.618 56.659 36 MM_G25U26:A10C72_MM M 25 ? M 72 ? M 26 ? M 10 ? 1 B U 26 1_555 B A 10 1_555 B A 27 1_555 B U 49 1_555 0.983 -0.380 6.767 -7.264 8.448 -7.941 -17.170 -12.010 4.692 -41.420 -35.616 -13.675 37 MM_U26A27:U49A10_MM M 26 ? M 10 ? M 27 ? M 49 ? 1 B A 27 1_555 B U 49 1_555 B G 21 1_555 B C 30 1_555 -2.966 2.778 4.119 65.590 153.705 113.856 0.258 1.970 4.214 77.806 -33.202 172.979 38 MM_A27G21:C30U49_MM M 27 ? M 49 ? M 21 ? M 30 ? 1 B G 21 1_555 B C 30 1_555 B G 20 1_555 B C 31 1_555 -0.450 1.869 -3.339 -4.147 -5.611 -41.025 -3.221 -0.199 -3.097 7.937 -5.866 -41.589 39 MM_G21G20:C31C30_MM M 21 ? M 30 ? M 20 ? M 31 ? 1 B G 20 1_555 B C 31 1_555 B C 19 1_555 B G 32 1_555 0.112 1.838 -3.103 4.785 -5.279 -25.806 -5.201 -0.872 -2.658 11.544 10.463 -26.755 40 MM_G20C19:G32C31_MM M 20 ? M 31 ? M 19 ? M 32 ? 1 B C 19 1_555 B G 32 1_555 B U 18 1_555 B G 33 1_555 0.491 2.182 -2.866 -5.984 -5.782 -18.638 -8.124 3.415 -1.865 16.809 -17.397 -20.396 41 MM_C19U18:G33G32_MM M 19 ? M 32 ? M 18 ? M 33 ? 1 B U 18 1_555 B G 33 1_555 B U 17 1_555 B A 34 1_555 0.342 1.767 -3.503 0.920 -5.042 -43.282 -2.887 0.368 -3.293 6.807 1.242 -43.570 42 MM_U18U17:A34G33_MM M 18 ? M 33 ? M 17 ? M 34 ? 1 B U 17 1_555 B A 34 1_555 B A 16 1_555 B U 35 1_555 -0.848 2.805 -3.319 -2.833 0.743 -28.179 -5.553 -1.052 -3.457 -1.521 -5.798 -28.327 43 MM_U17A16:U35A34_MM M 17 ? M 34 ? M 16 ? M 35 ? 1 B A 16 1_555 B U 35 1_555 B U 45 1_555 B G 36 1_555 3.576 0.656 -2.852 -4.683 -8.480 -49.348 -1.265 4.485 -2.389 10.044 -5.547 -50.231 44 MM_A16U45:G36U35_MM M 16 ? M 35 ? M 45 ? M 36 ? 1 B U 45 1_555 B G 36 1_555 B G 44 1_555 B C 37 1_555 0.027 1.371 -3.337 1.057 -8.072 -42.819 -2.613 -0.064 -3.042 10.938 1.432 -43.550 45 MM_U45G44:C37G36_MM M 45 ? M 36 ? M 44 ? M 37 ? 1 B G 44 1_555 B C 37 1_555 B G 43 1_555 B C 38 1_555 -0.192 1.636 -3.652 -2.813 -11.079 -35.560 -4.095 0.089 -3.031 17.589 -4.466 -37.296 46 MM_G44G43:C38C37_MM M 44 ? M 37 ? M 43 ? M 38 ? 1 B G 43 1_555 B C 38 1_555 B A 42 1_555 B G 39 1_555 -2.139 1.259 -2.853 -4.004 -13.435 -53.738 -2.026 -2.100 -2.634 14.585 -4.347 -55.405 47 MM_G43A42:G39C38_MM M 43 ? M 38 ? M 42 ? M 39 ? 1 B C 53 1_555 B G 70 1_555 B U 54 1_555 B U 69 1_555 -0.857 -2.664 3.382 -4.635 14.321 24.553 -8.087 0.846 1.726 30.308 9.810 28.739 48 MM_C53U54:U69G70_MM M 53 ? M 70 ? M 54 ? M 69 ? 1 B U 54 1_555 B U 69 1_555 B U 55 1_555 B A 68 1_555 -0.401 -1.166 3.286 -1.244 3.728 43.141 -1.940 0.424 3.189 5.058 1.687 43.311 49 MM_U54U55:A68U69_MM M 54 ? M 69 ? M 55 ? M 68 ? 1 B U 55 1_555 B A 68 1_555 B C 56 1_555 B G 67 1_555 -0.136 -1.332 3.166 -1.895 8.951 31.567 -3.761 -0.057 2.701 16.037 3.395 32.834 50 MM_U55C56:G67A68_MM M 55 ? M 68 ? M 56 ? M 67 ? 1 B C 56 1_555 B G 67 1_555 B C 57 1_555 B G 66 1_555 -0.529 -1.445 3.127 -1.087 11.411 29.153 -4.579 0.801 2.421 21.643 2.062 31.280 51 MM_C56C57:G66G67_MM M 56 ? M 67 ? M 57 ? M 66 ? 1 B C 57 1_555 B G 66 1_555 B A 58 1_555 B U 65 1_555 -0.803 -1.405 3.175 -3.343 11.727 31.867 -4.099 0.886 2.582 20.447 5.828 34.064 52 MM_C57A58:U65G66_MM M 57 ? M 66 ? M 58 ? M 65 ? 1 B A 58 1_555 B U 65 1_555 B C 59 1_555 B G 64 1_555 0.391 -1.379 3.363 2.868 12.664 35.839 -3.671 -0.248 2.759 19.796 -4.484 38.046 53 MM_A58C59:G64U65_MM M 58 ? M 65 ? M 59 ? M 64 ? 1 B C 59 1_555 B G 64 1_555 B G 60 1_555 B A 63 1_555 -2.394 -1.701 3.817 -0.512 19.620 56.606 -2.791 2.378 3.145 20.036 0.523 59.645 54 MM_C59G60:A63G64_MM M 59 ? M 64 ? M 60 ? M 63 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R35 152029' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9EBP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.008963 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015194 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012308 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H IR N O P # loop_ #