data_9ECQ # _entry.id 9ECQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9ECQ pdb_00009ecq 10.2210/pdb9ecq/pdb WWPDB D_1000290025 ? ? BMRB 31216 ? 10.13018/BMR31216 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-16 ? 2 'Structure model' 1 1 2025-06-25 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9ECQ _pdbx_database_status.recvd_initial_deposition_date 2024-11-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR solution structure of tRNA-Arg-UCU-4-1 anticodon stem loop with no chemical modifications' _pdbx_database_related.db_id 31216 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email dfu4@ur.rochester.edu _pdbx_contact_author.name_first Dragony _pdbx_contact_author.name_last Fu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8725-8658 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Berger, K.D.' 1 0000-0002-0277-5606 'Puthenpeedikakkal, A.M.K.' 2 0009-0001-9077-4653 'Matthews, D.H.' 3 0000-0002-2907-6557 'Fu, D.' 4 0000-0002-8725-8658 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 437 _citation.language ? _citation.page_first 169096 _citation.page_last 169096 _citation.title 'Structural Impact of 3-methylcytosine Modification on the Anticodon Stem-loop of a Neuronally-enriched Arginine tRNA.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2025.169096 _citation.pdbx_database_id_PubMed 40158946 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Berger, K.D.' 1 ? primary 'Puthenpeedikakkal, A.M.K.' 2 ? primary 'Mathews, D.H.' 3 ? primary 'Fu, D.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Neuronally expressed tRNA-Arg-UCU-4-1 anticodon stem-loop' _entity.formula_weight 5364.221 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUGGACUUCUAAUCCAG _entity_poly.pdbx_seq_one_letter_code_can CUGGACUUCUAAUCCAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 G n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 C n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 A n 1 17 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 27 27 C C A . n A 1 2 U 2 28 28 U U A . n A 1 3 G 3 29 29 G G A . n A 1 4 G 4 30 30 G G A . n A 1 5 A 5 31 31 A A A . n A 1 6 C 6 32 32 C C A . n A 1 7 U 7 33 33 U U A . n A 1 8 U 8 34 34 U U A . n A 1 9 C 9 35 35 C C A . n A 1 10 U 10 36 36 U U A . n A 1 11 A 11 37 37 A A A . n A 1 12 A 12 38 38 A A A . n A 1 13 U 13 39 39 U U A . n A 1 14 C 14 40 40 C C A . n A 1 15 C 15 41 41 C C A . n A 1 16 A 16 42 42 A A A . n A 1 17 G 17 43 43 G G A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9ECQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9ECQ _struct.title 'NMR solution structure of tRNA-Arg-UCU-4-1 anticodon stem loop with no chemical modifications' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9ECQ _struct_keywords.text 'tRNA, Anticodon, ASL, anticodon stem-loop, UCU, UCU-4-1, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9ECQ _struct_ref.pdbx_db_accession 9ECQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9ECQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9ECQ _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 43 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 43 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 16 N1 ? ? A U 28 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 16 N6 ? ? A U 28 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 13 N3 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 13 O4 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 A A 12 N6 ? ? A C 32 A A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 7 O2 ? ? ? 1_555 A A 11 N6 ? ? A U 33 A A 37 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9ECQ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.93 121.90 -4.97 0.70 N 2 1 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.25 117.70 3.55 0.50 N 3 1 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.81 118.60 -4.79 0.60 N 4 1 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.55 121.90 -4.35 0.70 N 5 1 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.34 108.50 4.84 0.70 N 6 1 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.67 121.90 -4.23 0.70 N 7 1 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.15 108.50 4.65 0.70 N 8 1 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.60 117.00 -3.40 0.50 N 9 1 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.52 117.70 3.82 0.50 N 10 1 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.76 118.60 -4.84 0.60 N 11 1 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.24 108.50 4.74 0.70 N 12 1 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.70 117.00 -3.30 0.50 N 13 1 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.31 117.70 3.61 0.50 N 14 1 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.34 118.60 -5.26 0.60 N 15 1 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.06 121.90 -4.84 0.70 N 16 1 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.64 121.90 -5.26 0.70 N 17 1 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.96 117.00 -3.04 0.50 N 18 1 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.09 117.70 3.39 0.50 N 19 1 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.04 118.60 -4.56 0.60 N 20 2 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.84 121.90 -5.06 0.70 N 21 2 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.10 117.70 3.40 0.50 N 22 2 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.72 118.60 -4.88 0.60 N 23 2 "O4'" A C 32 ? ? "C1'" A C 32 ? ? N1 A C 32 ? ? 113.06 108.50 4.56 0.70 N 24 2 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.59 121.90 -4.31 0.70 N 25 2 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 112.71 108.50 4.21 0.70 N 26 2 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.96 108.50 5.46 0.70 N 27 2 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.71 117.00 -3.29 0.50 N 28 2 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.50 117.70 3.80 0.50 N 29 2 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.79 118.60 -4.81 0.60 N 30 2 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.18 108.50 4.68 0.70 N 31 2 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.52 117.00 -3.48 0.50 N 32 2 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.19 117.70 3.49 0.50 N 33 2 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.37 118.60 -5.23 0.60 N 34 2 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 113.15 108.50 4.65 0.70 N 35 2 "O4'" A C 40 ? ? "C1'" A C 40 ? ? N1 A C 40 ? ? 112.95 108.50 4.45 0.70 N 36 2 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.04 121.90 -4.86 0.70 N 37 2 "O4'" A C 41 ? ? "C1'" A C 41 ? ? N1 A C 41 ? ? 112.73 108.50 4.23 0.70 N 38 2 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.77 121.90 -5.13 0.70 N 39 2 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 120.89 117.70 3.19 0.50 N 40 2 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.18 118.60 -4.42 0.60 N 41 3 N1 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 122.58 118.90 3.68 0.60 N 42 3 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.60 121.90 -5.30 0.70 N 43 3 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.03 117.70 3.33 0.50 N 44 3 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.52 118.60 -5.08 0.60 N 45 3 "O4'" A C 32 ? ? "C1'" A C 32 ? ? N1 A C 32 ? ? 113.31 108.50 4.81 0.70 N 46 3 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.40 121.90 -4.50 0.70 N 47 3 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.11 108.50 4.61 0.70 N 48 3 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.29 121.90 -4.61 0.70 N 49 3 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.49 108.50 4.99 0.70 N 50 3 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.59 117.00 -3.41 0.50 N 51 3 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.49 117.70 3.79 0.50 N 52 3 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.48 118.60 -5.12 0.60 N 53 3 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.53 108.50 5.03 0.70 N 54 3 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.68 117.00 -3.32 0.50 N 55 3 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.17 117.70 3.47 0.50 N 56 3 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.53 118.60 -5.07 0.60 N 57 3 "O4'" A C 40 ? ? "C1'" A C 40 ? ? N1 A C 40 ? ? 112.93 108.50 4.43 0.70 N 58 3 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.95 121.90 -4.95 0.70 N 59 3 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.67 121.90 -5.23 0.70 N 60 3 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.92 117.00 -3.08 0.50 N 61 3 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.22 117.70 3.52 0.50 N 62 3 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.18 118.60 -4.42 0.60 N 63 4 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.86 121.90 -5.04 0.70 N 64 4 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.12 117.70 3.42 0.50 N 65 4 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 114.05 118.60 -4.55 0.60 N 66 4 "O4'" A C 32 ? ? "C1'" A C 32 ? ? N1 A C 32 ? ? 113.27 108.50 4.77 0.70 N 67 4 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.06 121.90 -4.84 0.70 N 68 4 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.18 108.50 4.68 0.70 N 69 4 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.36 121.90 -4.54 0.70 N 70 4 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.38 108.50 4.88 0.70 N 71 4 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.87 117.00 -3.13 0.50 N 72 4 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.49 117.70 3.79 0.50 N 73 4 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.89 118.60 -4.71 0.60 N 74 4 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.91 108.50 5.41 0.70 N 75 4 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.58 117.00 -3.42 0.50 N 76 4 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.25 117.70 3.55 0.50 N 77 4 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.13 118.60 -5.47 0.60 N 78 4 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 112.74 108.50 4.24 0.70 N 79 4 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.03 121.90 -4.87 0.70 N 80 4 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.99 121.90 -4.91 0.70 N 81 4 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.20 117.70 3.50 0.50 N 82 4 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 113.76 118.60 -4.84 0.60 N 83 5 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.10 121.90 -4.80 0.70 N 84 5 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.83 117.00 -3.17 0.50 N 85 5 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.37 117.70 3.67 0.50 N 86 5 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.48 118.60 -5.12 0.60 N 87 5 "O4'" A C 32 ? ? "C1'" A C 32 ? ? N1 A C 32 ? ? 113.49 108.50 4.99 0.70 N 88 5 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.42 121.90 -4.48 0.70 N 89 5 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.90 108.50 5.40 0.70 N 90 5 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.56 121.90 -4.34 0.70 N 91 5 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 112.80 108.50 4.30 0.70 N 92 5 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.31 117.00 -3.69 0.50 N 93 5 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.92 117.70 4.22 0.50 N 94 5 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.45 118.60 -5.15 0.60 N 95 5 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.50 108.50 5.00 0.70 N 96 5 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.48 117.00 -3.52 0.50 N 97 5 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.44 117.70 3.74 0.50 N 98 5 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.21 118.60 -5.39 0.60 N 99 5 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 113.10 108.50 4.60 0.70 N 100 5 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.83 121.90 -5.07 0.70 N 101 5 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.93 121.90 -4.97 0.70 N 102 5 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.16 117.70 3.46 0.50 N 103 5 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.19 118.60 -4.41 0.60 N 104 6 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.67 121.90 -5.23 0.70 N 105 6 "O4'" A U 28 ? ? "C1'" A U 28 ? ? N1 A U 28 ? ? 112.82 108.50 4.32 0.70 N 106 6 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.76 117.00 -3.24 0.50 N 107 6 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.17 117.70 3.47 0.50 N 108 6 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.81 118.60 -4.79 0.60 N 109 6 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.43 121.90 -4.47 0.70 N 110 6 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.32 108.50 4.82 0.70 N 111 6 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.48 121.90 -4.42 0.70 N 112 6 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.06 108.50 4.56 0.70 N 113 6 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.56 117.00 -3.44 0.50 N 114 6 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.67 117.70 3.97 0.50 N 115 6 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 114.23 118.60 -4.37 0.60 N 116 6 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.21 108.50 4.71 0.70 N 117 6 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.87 117.00 -3.13 0.50 N 118 6 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.15 117.70 3.45 0.50 N 119 6 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.12 118.60 -5.48 0.60 N 120 6 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.85 121.90 -5.05 0.70 N 121 6 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.91 121.90 -4.99 0.70 N 122 6 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.55 117.00 -3.45 0.50 N 123 6 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.14 117.70 3.44 0.50 N 124 6 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 113.86 118.60 -4.74 0.60 N 125 7 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.85 121.90 -5.05 0.70 N 126 7 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.93 117.00 -3.07 0.50 N 127 7 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.30 117.70 3.60 0.50 N 128 7 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.19 118.60 -5.41 0.60 N 129 7 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.10 121.90 -4.80 0.70 N 130 7 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.85 108.50 5.35 0.70 N 131 7 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.45 121.90 -4.45 0.70 N 132 7 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.62 108.50 5.12 0.70 N 133 7 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.30 117.00 -3.70 0.50 N 134 7 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.82 117.70 4.12 0.50 N 135 7 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.59 118.60 -5.01 0.60 N 136 7 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.91 108.50 5.41 0.70 N 137 7 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.77 117.00 -3.23 0.50 N 138 7 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.31 117.70 3.61 0.50 N 139 7 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.13 118.60 -5.47 0.60 N 140 7 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.82 121.90 -5.08 0.70 N 141 7 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 117.11 121.90 -4.79 0.70 N 142 7 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.96 117.00 -3.04 0.50 N 143 7 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.21 117.70 3.51 0.50 N 144 7 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.00 118.60 -4.60 0.60 N 145 8 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.96 121.90 -4.94 0.70 N 146 8 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.82 117.00 -3.18 0.50 N 147 8 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.49 117.70 3.79 0.50 N 148 8 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.59 118.60 -5.01 0.60 N 149 8 "O4'" A C 32 ? ? "C1'" A C 32 ? ? N1 A C 32 ? ? 113.17 108.50 4.67 0.70 N 150 8 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.56 121.90 -4.34 0.70 N 151 8 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.95 108.50 5.45 0.70 N 152 8 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.60 121.90 -4.30 0.70 N 153 8 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.00 108.50 4.50 0.70 N 154 8 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.96 117.00 -3.04 0.50 N 155 8 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.44 117.70 3.74 0.50 N 156 8 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 114.39 118.60 -4.21 0.60 N 157 8 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.56 108.50 5.06 0.70 N 158 8 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.81 117.00 -3.19 0.50 N 159 8 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.21 117.70 3.51 0.50 N 160 8 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.59 118.60 -5.01 0.60 N 161 8 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.85 121.90 -5.05 0.70 N 162 8 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 117.13 121.90 -4.77 0.70 N 163 8 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.96 117.00 -3.04 0.50 N 164 8 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.30 117.70 3.60 0.50 N 165 8 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.33 118.60 -4.27 0.60 N 166 9 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.99 121.90 -4.91 0.70 N 167 9 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 120.90 117.70 3.20 0.50 N 168 9 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.57 118.60 -5.03 0.60 N 169 9 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.70 121.90 -4.20 0.70 N 170 9 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.33 108.50 4.83 0.70 N 171 9 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.19 121.90 -4.71 0.70 N 172 9 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.53 108.50 5.03 0.70 N 173 9 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.90 117.00 -3.10 0.50 N 174 9 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.26 117.70 3.56 0.50 N 175 9 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.79 118.60 -4.81 0.60 N 176 9 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 112.71 108.50 4.21 0.70 N 177 9 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.46 117.00 -3.54 0.50 N 178 9 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.42 117.70 3.72 0.50 N 179 9 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.06 118.60 -5.54 0.60 N 180 9 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.18 121.90 -4.72 0.70 N 181 9 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.90 121.90 -5.00 0.70 N 182 9 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.71 117.00 -3.29 0.50 N 183 9 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.17 117.70 3.47 0.50 N 184 9 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 113.92 118.60 -4.68 0.60 N 185 10 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.23 121.90 -4.67 0.70 N 186 10 "O4'" A U 28 ? ? "C1'" A U 28 ? ? N1 A U 28 ? ? 112.95 108.50 4.45 0.70 N 187 10 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.56 117.00 -3.44 0.50 N 188 10 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.36 117.70 3.66 0.50 N 189 10 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.02 118.60 -5.58 0.60 N 190 10 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.61 121.90 -4.29 0.70 N 191 10 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.91 108.50 5.41 0.70 N 192 10 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.00 121.90 -4.90 0.70 N 193 10 "O4'" A U 36 ? ? "C1'" A U 36 ? ? N1 A U 36 ? ? 113.86 108.50 5.36 0.70 N 194 10 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.63 117.00 -3.37 0.50 N 195 10 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.48 117.70 3.78 0.50 N 196 10 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 114.10 118.60 -4.50 0.60 N 197 10 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.37 108.50 4.87 0.70 N 198 10 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.70 117.00 -3.30 0.50 N 199 10 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.17 117.70 3.47 0.50 N 200 10 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.21 118.60 -5.39 0.60 N 201 10 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 112.82 108.50 4.32 0.70 N 202 10 N1 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 122.55 118.90 3.65 0.60 N 203 10 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.51 121.90 -5.39 0.70 N 204 10 "O4'" A C 41 ? ? "C1'" A C 41 ? ? N1 A C 41 ? ? 112.76 108.50 4.26 0.70 N 205 10 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.64 121.90 -5.26 0.70 N 206 10 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.11 117.70 3.41 0.50 N 207 10 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.24 118.60 -4.36 0.60 N 208 11 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.69 121.90 -5.21 0.70 N 209 11 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.74 117.00 -3.26 0.50 N 210 11 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.37 117.70 3.67 0.50 N 211 11 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.26 118.60 -5.34 0.60 N 212 11 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.65 121.90 -4.25 0.70 N 213 11 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 112.74 108.50 4.24 0.70 N 214 11 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.75 117.00 -3.25 0.50 N 215 11 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.47 117.70 3.77 0.50 N 216 11 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.74 118.60 -4.86 0.60 N 217 11 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.72 117.00 -3.28 0.50 N 218 11 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.01 117.70 3.31 0.50 N 219 11 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.07 118.60 -5.53 0.60 N 220 11 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 112.94 108.50 4.44 0.70 N 221 11 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.96 121.90 -4.94 0.70 N 222 11 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 117.00 121.90 -4.90 0.70 N 223 11 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.90 117.00 -3.10 0.50 N 224 11 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.17 117.70 3.47 0.50 N 225 11 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.27 118.60 -4.33 0.60 N 226 12 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.19 121.90 -4.71 0.70 N 227 12 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.04 117.70 3.34 0.50 N 228 12 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.73 118.60 -4.87 0.60 N 229 12 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.61 108.50 5.11 0.70 N 230 12 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.40 121.90 -4.50 0.70 N 231 12 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.40 117.00 -3.60 0.50 N 232 12 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.63 117.70 3.93 0.50 N 233 12 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.86 118.60 -4.74 0.60 N 234 12 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.73 117.00 -3.27 0.50 N 235 12 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.27 117.70 3.57 0.50 N 236 12 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.15 118.60 -5.45 0.60 N 237 12 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 112.87 108.50 4.37 0.70 N 238 12 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.82 121.90 -5.08 0.70 N 239 12 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.87 121.90 -5.03 0.70 N 240 12 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.67 117.00 -3.33 0.50 N 241 12 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.45 117.70 3.75 0.50 N 242 12 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.00 118.60 -4.60 0.60 N 243 13 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.98 121.90 -4.92 0.70 N 244 13 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.13 117.70 3.43 0.50 N 245 13 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.65 118.60 -4.95 0.60 N 246 13 "O4'" A C 32 ? ? "C1'" A C 32 ? ? N1 A C 32 ? ? 112.83 108.50 4.33 0.70 N 247 13 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.57 108.50 5.07 0.70 N 248 13 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.20 121.90 -4.70 0.70 N 249 13 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.61 117.00 -3.39 0.50 N 250 13 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.46 117.70 3.76 0.50 N 251 13 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.64 118.60 -4.96 0.60 N 252 13 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 112.95 108.50 4.45 0.70 N 253 13 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.78 117.00 -3.22 0.50 N 254 13 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.28 117.70 3.58 0.50 N 255 13 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.33 118.60 -5.27 0.60 N 256 13 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.01 121.90 -4.89 0.70 N 257 13 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.99 121.90 -4.91 0.70 N 258 13 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.70 117.00 -3.30 0.50 N 259 13 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.29 117.70 3.59 0.50 N 260 13 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 113.89 118.60 -4.71 0.60 N 261 14 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.86 121.90 -5.04 0.70 N 262 14 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.81 117.00 -3.19 0.50 N 263 14 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.19 117.70 3.49 0.50 N 264 14 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.69 118.60 -4.91 0.60 N 265 14 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 117.70 121.90 -4.20 0.70 N 266 14 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 114.12 108.50 5.62 0.70 N 267 14 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.37 121.90 -4.53 0.70 N 268 14 C4 A A 37 ? ? C5 A A 37 ? ? C6 A A 37 ? ? 113.58 117.00 -3.42 0.50 N 269 14 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.51 117.70 3.81 0.50 N 270 14 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 113.59 118.60 -5.01 0.60 N 271 14 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.00 108.50 4.50 0.70 N 272 14 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.53 117.00 -3.47 0.50 N 273 14 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.31 117.70 3.61 0.50 N 274 14 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.08 118.60 -5.52 0.60 N 275 14 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.06 121.90 -4.84 0.70 N 276 14 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.89 121.90 -5.01 0.70 N 277 14 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.81 117.00 -3.19 0.50 N 278 14 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.12 117.70 3.42 0.50 N 279 14 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 113.64 118.60 -4.96 0.60 N 280 15 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.56 121.90 -5.34 0.70 N 281 15 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 113.90 117.00 -3.10 0.50 N 282 15 C5 A A 31 ? ? C6 A A 31 ? ? N1 A A 31 ? ? 121.20 117.70 3.50 0.50 N 283 15 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 113.74 118.60 -4.86 0.60 N 284 15 "O4'" A C 32 ? ? "C1'" A C 32 ? ? N1 A C 32 ? ? 113.09 108.50 4.59 0.70 N 285 15 N3 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 116.65 121.90 -5.25 0.70 N 286 15 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 114.30 108.50 5.80 0.70 N 287 15 N3 A C 35 ? ? C2 A C 35 ? ? O2 A C 35 ? ? 117.44 121.90 -4.46 0.70 N 288 15 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.44 117.70 3.74 0.50 N 289 15 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 114.71 118.60 -3.89 0.60 N 290 15 "O4'" A A 38 ? ? "C1'" A A 38 ? ? N9 A A 38 ? ? 113.60 108.50 5.10 0.70 N 291 15 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 113.62 117.00 -3.38 0.50 N 292 15 C5 A A 38 ? ? C6 A A 38 ? ? N1 A A 38 ? ? 121.32 117.70 3.62 0.50 N 293 15 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 113.19 118.60 -5.41 0.60 N 294 15 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 112.81 108.50 4.31 0.70 N 295 15 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 116.95 121.90 -4.95 0.70 N 296 15 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.96 121.90 -4.94 0.70 N 297 15 C4 A A 42 ? ? C5 A A 42 ? ? C6 A A 42 ? ? 113.69 117.00 -3.31 0.50 N 298 15 C5 A A 42 ? ? C6 A A 42 ? ? N1 A A 42 ? ? 121.33 117.70 3.63 0.50 N 299 15 N1 A A 42 ? ? C6 A A 42 ? ? N6 A A 42 ? ? 114.07 118.60 -4.53 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 35 ? ? 0.065 'SIDE CHAIN' 2 1 A A 37 ? ? 0.060 'SIDE CHAIN' 3 2 C A 32 ? ? 0.059 'SIDE CHAIN' 4 2 A A 37 ? ? 0.079 'SIDE CHAIN' 5 3 C A 35 ? ? 0.066 'SIDE CHAIN' 6 3 A A 37 ? ? 0.079 'SIDE CHAIN' 7 4 A A 37 ? ? 0.065 'SIDE CHAIN' 8 5 A A 37 ? ? 0.074 'SIDE CHAIN' 9 6 C A 35 ? ? 0.068 'SIDE CHAIN' 10 6 A A 37 ? ? 0.060 'SIDE CHAIN' 11 7 C A 32 ? ? 0.066 'SIDE CHAIN' 12 7 C A 35 ? ? 0.076 'SIDE CHAIN' 13 8 C A 32 ? ? 0.062 'SIDE CHAIN' 14 8 A A 37 ? ? 0.073 'SIDE CHAIN' 15 9 C A 27 ? ? 0.061 'SIDE CHAIN' 16 9 C A 35 ? ? 0.078 'SIDE CHAIN' 17 9 A A 37 ? ? 0.059 'SIDE CHAIN' 18 10 A A 37 ? ? 0.070 'SIDE CHAIN' 19 11 C A 27 ? ? 0.064 'SIDE CHAIN' 20 11 C A 35 ? ? 0.072 'SIDE CHAIN' 21 11 A A 37 ? ? 0.092 'SIDE CHAIN' 22 13 A A 37 ? ? 0.067 'SIDE CHAIN' 23 14 C A 27 ? ? 0.066 'SIDE CHAIN' 24 14 A A 37 ? ? 0.061 'SIDE CHAIN' 25 15 C A 32 ? ? 0.066 'SIDE CHAIN' 26 15 A A 37 ? ? 0.055 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 9ECQ _pdbx_nmr_ensemble.conformers_calculated_total_number 300 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9ECQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10 mM sodium phosphate, 300 uM tRNA-Arg-UCU-4-1 Anticodon stem-loop, 50 uM EDTA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label Unlabeled _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 'tRNA-Arg-UCU-4-1 Anticodon stem-loop' 300 ? uM 'natural abundance' 1 EDTA 50 ? uM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.3 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 15C _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_refine.entry_id 9ECQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 4 collection TopSpin ? 'Bruker Biospin' 5 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 1 'chemical shift assignment' NMRFAM-SPARKY ? 'University of Madison-Wisconsin' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' 3 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9ECQ 'double helix' 9ECQ 'a-form double helix' 9ECQ 'hairpin loop' 9ECQ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 17 1_555 0.386 -0.092 -0.028 6.842 -14.065 -0.088 1 A_C27:G43_A A 27 ? A 43 ? 19 1 1 A U 2 1_555 A A 16 1_555 -0.101 0.005 -0.117 3.108 -14.692 -0.602 2 A_U28:A42_A A 28 ? A 42 ? 20 1 1 A G 3 1_555 A C 15 1_555 -0.352 -0.095 0.070 -0.837 -8.718 -0.900 3 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A G 4 1_555 A C 14 1_555 -0.442 -0.122 0.181 3.314 -7.699 -0.557 4 A_G30:C40_A A 30 ? A 40 ? 19 1 1 A A 5 1_555 A U 13 1_555 0.077 0.014 -0.326 -9.284 -22.430 -0.399 5 A_A31:U39_A A 31 ? A 39 ? 20 1 1 A C 6 1_555 A A 12 1_555 5.071 -0.336 1.090 -25.998 -8.973 22.567 6 A_C32:A38_A A 32 ? A 38 ? ? ? 1 A U 7 1_555 A A 11 1_555 4.457 -0.538 -0.854 -2.701 -3.124 17.045 7 A_U33:A37_A A 33 ? A 37 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 17 1_555 A U 2 1_555 A A 16 1_555 0.047 -1.651 3.301 1.805 9.985 30.461 -4.664 0.217 2.640 18.375 -3.322 32.068 1 AA_C27U28:A42G43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A U 2 1_555 A A 16 1_555 A G 3 1_555 A C 15 1_555 0.129 -1.460 3.290 -1.564 14.342 30.675 -4.623 -0.452 2.382 25.422 2.773 33.824 2 AA_U28G29:C41A42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 3 1_555 A C 15 1_555 A G 4 1_555 A C 14 1_555 0.144 -1.866 3.126 -1.124 5.382 29.042 -4.693 -0.497 2.736 10.613 2.216 29.547 3 AA_G29G30:C40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A G 4 1_555 A C 14 1_555 A A 5 1_555 A U 13 1_555 0.045 -1.911 3.600 2.893 12.652 34.222 -4.801 0.329 2.741 20.605 -4.712 36.531 4 AA_G30A31:U39C40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A A 5 1_555 A U 13 1_555 A C 6 1_555 A A 12 1_555 1.453 -0.926 3.723 -2.549 7.527 50.448 -1.655 -1.883 3.488 8.768 2.970 51.030 5 AA_A31C32:A38U39_AA A 31 ? A 39 ? A 32 ? A 38 ? 1 A C 6 1_555 A A 12 1_555 A U 7 1_555 A A 11 1_555 -0.726 -1.465 2.686 19.681 -5.056 25.235 -1.923 4.073 1.900 -9.795 -38.127 32.296 6 AA_C32U33:A37A38_AA A 32 ? A 38 ? A 33 ? A 37 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GR532955 _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 9ECQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #