HEADER HYDROLASE 08-MAR-24 9EMG TITLE SMNUC1 NUCLEASE FROM STENOTROPHOMONAS MALTOPHILIA IN COMPLEX WITH TITLE 2 GUANOSINE-5'-MONOPHOSPHATE AS A PRODUCT OF C-DI-GMP CLEAVAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S1/P1 NUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_TAXID: 40324; SOURCE 4 STRAIN: SANG_2012; SOURCE 5 GENE: FEO86_17535, HKK60_04680, I5U85_21415; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET303/CT-HIS_SMNUC1 KEYWDS NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ADAMKOVA,T.KOVAL,P.KOLENKO,J.DOHNALEK REVDAT 2 15-JAN-25 9EMG 1 JRNL REVDAT 1 25-DEC-24 9EMG 0 JRNL AUTH K.ADAMKOVA,M.TRUNDOVA,T.KOVAL,B.HUSTAKOVA,P.KOLENKO, JRNL AUTH 2 J.DUSKOVA,T.SKALOVA,J.DOHNALEK JRNL TITL SUBSTRATE PREFERENCE, RNA BINDING AND ACTIVE SITE JRNL TITL 2 VERSATILITY OF STENOTROPHOMONAS MALTOPHILIA NUCLEASE SMNUC1, JRNL TITL 3 EXPLAINED BY A STRUCTURAL STUDY. JRNL REF FEBS J. V. 292 129 2025 JRNL REFN ISSN 1742-464X JRNL PMID 39361520 JRNL DOI 10.1111/FEBS.17265 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 165597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.131 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7969 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7305 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 747 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21800 REMARK 3 B22 (A**2) : -0.31900 REMARK 3 B33 (A**2) : 0.06300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4354 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4100 ; 0.007 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5967 ; 1.606 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9432 ; 1.579 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 5.936 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 284 ;30.984 ;20.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 743 ;13.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;17.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5582 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1104 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1014 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 135 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2078 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 484 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.242 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 12 ; 0.051 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.107 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2082 ; 1.440 ; 1.227 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2081 ; 1.426 ;59.016 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2624 ; 1.799 ; 1.853 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2625 ; 1.799 ;23.176 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2272 ; 2.228 ; 1.576 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2244 ; 2.218 ; 8.247 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3300 ; 2.679 ; 2.254 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3259 ; 2.654 ; 2.228 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4346 ; 2.237 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0837 4.4726 39.6643 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: 0.0071 REMARK 3 T33: 0.0063 T12: 0.0002 REMARK 3 T13: -0.0000 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0242 L22: 0.0105 REMARK 3 L33: 0.0110 L12: 0.0027 REMARK 3 L13: -0.0072 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0002 S13: -0.0015 REMARK 3 S21: 0.0003 S22: -0.0007 S23: -0.0007 REMARK 3 S31: 0.0011 S32: 0.0005 S33: 0.0006 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 271 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2630 -4.8505 5.1849 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.0072 REMARK 3 T33: 0.0112 T12: -0.0004 REMARK 3 T13: 0.0049 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0185 L22: 0.0859 REMARK 3 L33: 0.0918 L12: -0.0083 REMARK 3 L13: -0.0360 L23: -0.0180 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0002 S13: 0.0015 REMARK 3 S21: -0.0314 S22: -0.0011 S23: -0.0105 REMARK 3 S31: 0.0024 S32: -0.0006 S33: -0.0026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS. THE LAST REFINEMENT CYCLE WAS PERFORMED REMARK 3 AGAINST ALL REFLECTIONS. REMARK 4 REMARK 4 9EMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292136185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 165597 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.148 REMARK 200 RESOLUTION RANGE LOW (A) : 43.393 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M MES PH REMARK 280 6.5, 30% W/V POLYETHYLENE GLYCOL 5000. PROTEIN CONCENTRATION 7.5 REMARK 280 MG/ML. CRYO-PROTECTION BY GLYCEROL 25 % V/V., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.31850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 ARG B 272 REMARK 465 LEU B 273 REMARK 465 GLU B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 81.68 -154.14 REMARK 500 ILE A 92 17.08 -146.10 REMARK 500 ASP A 95 31.46 -99.62 REMARK 500 CYS A 105 49.64 -144.70 REMARK 500 CYS A 105 50.94 -145.35 REMARK 500 THR A 172 -158.58 -155.72 REMARK 500 SER A 180 -32.40 -151.40 REMARK 500 ASP B 77 79.20 -163.94 REMARK 500 CYS B 105 46.83 -141.94 REMARK 500 CYS B 105 48.03 -142.46 REMARK 500 THR B 172 -158.46 -148.46 REMARK 500 SER B 180 -28.04 -154.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 908 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B1337 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1338 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1339 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 27 N REMARK 620 2 TRP A 27 O 75.7 REMARK 620 3 HIS A 32 NE2 111.4 90.3 REMARK 620 4 ASP A 145 OD1 87.4 162.4 91.4 REMARK 620 5 HOH A 617 O 131.0 98.4 117.3 96.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 HIS A 88 ND1 84.6 REMARK 620 3 HIS A 141 NE2 86.3 101.1 REMARK 620 4 ASP A 145 OD2 177.8 94.1 92.4 REMARK 620 5 HOH A 617 O 86.7 141.9 115.2 95.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 HIS A 175 NE2 102.5 REMARK 620 3 ASP A 179 OD2 127.1 100.9 REMARK 620 4 HIS A 275 NE2 34.7 136.1 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP B 27 N REMARK 620 2 TRP B 27 O 76.9 REMARK 620 3 HIS B 32 NE2 113.4 89.8 REMARK 620 4 ASP B 145 OD1 86.9 163.4 93.1 REMARK 620 5 HOH B1030 O 133.0 95.5 112.9 98.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 71 OD1 REMARK 620 2 HIS B 88 ND1 84.1 REMARK 620 3 HIS B 141 NE2 84.3 98.9 REMARK 620 4 ASP B 145 OD2 177.6 94.6 93.9 REMARK 620 5 HOH B1030 O 83.5 149.0 108.0 98.5 REMARK 620 6 HOH B1039 O 79.4 78.7 163.7 102.4 71.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 151 NE2 REMARK 620 2 HIS B 175 NE2 98.2 REMARK 620 3 ASP B 179 OD1 83.0 98.4 REMARK 620 4 ASP B 179 OD2 137.8 92.7 55.0 REMARK 620 5 5GP B 405 O3' 112.5 96.9 156.3 106.3 REMARK 620 6 HOH B1008 O 93.4 167.2 88.2 82.2 73.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QJL RELATED DB: PDB REMARK 900 RELATED ID: 8GJM RELATED DB: PDB REMARK 900 RELATED ID: 8QJN RELATED DB: PDB REMARK 900 RELATED ID: 8QJO RELATED DB: PDB REMARK 900 RELATED ID: 8QJP RELATED DB: PDB REMARK 900 RELATED ID: 8QJQ RELATED DB: PDB DBREF1 9EMG A 27 272 UNP A0A6C8X1V5_STEMA DBREF2 9EMG A A0A6C8X1V5 27 272 DBREF1 9EMG B 27 272 UNP A0A6C8X1V5_STEMA DBREF2 9EMG B A0A6C8X1V5 27 272 SEQADV 9EMG LEU A 273 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG GLU A 274 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS A 275 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS A 276 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS A 277 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS A 278 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS A 279 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS A 280 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG LEU B 273 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG GLU B 274 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS B 275 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS B 276 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS B 277 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS B 278 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS B 279 UNP A0A6C8X1V EXPRESSION TAG SEQADV 9EMG HIS B 280 UNP A0A6C8X1V EXPRESSION TAG SEQRES 1 A 254 TRP GLY ALA GLN GLY HIS ARG LEU VAL ALA GLU VAL ALA SEQRES 2 A 254 ASP ALA ARG LEU ASN PRO THR ALA ARG ALA GLU VAL ASP SEQRES 3 A 254 ARG LEU LEU ALA THR GLU PRO ASP ALA THR LEU ALA SER SEQRES 4 A 254 ILE ALA PRO TRP ALA ASP GLN LEU ARG ALA LYS ASP PRO SEQRES 5 A 254 GLY LEU GLY ARG ARG SER ALA GLY TRP HIS TYR VAL ASN SEQRES 6 A 254 ILE ALA GLU ASP ASN CYS HIS TYR GLU ALA PRO LYS HIS SEQRES 7 A 254 CYS ARG ASN GLY ASN CYS ILE VAL GLU ALA LEU LYS ALA SEQRES 8 A 254 GLN SER THR ILE LEU GLY ASP ARG SER LEU THR ASP GLY SEQRES 9 A 254 GLU ARG LEU GLN ALA LEU LYS PHE VAL VAL HIS LEU VAL SEQRES 10 A 254 GLY ASP ILE HIS GLN PRO MET HIS ALA GLY TYR ALA HIS SEQRES 11 A 254 ASP LYS GLY GLY ASN ASP PHE GLN LEU GLN PHE GLY ASN SEQRES 12 A 254 ARG GLY THR ASN LEU HIS SER LEU TRP ASP SER GLY MET SEQRES 13 A 254 LEU ASN THR ARG LYS LEU ASP ASP ALA GLY TYR LEU PRO SEQRES 14 A 254 LEU LEU GLN SER GLN ARG ALA PRO LYS LEU ALA ARG GLN SEQRES 15 A 254 SER ASN PRO GLN ARG ASP PRO GLN THR TRP ALA GLU ALA SEQRES 16 A 254 SER CYS ARG ILE SER MET GLN ALA GLY VAL TYR PRO ALA SEQRES 17 A 254 THR ARG LYS ILE GLY ASP GLU TYR THR GLU ARG TYR ARG SEQRES 18 A 254 PRO LEU ALA GLU ALA GLN LEU ARG LEU ALA GLY GLU ASN SEQRES 19 A 254 LEU ALA GLN LEU LEU ASN ARG VAL LEU GLY ALA ARG LEU SEQRES 20 A 254 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 254 TRP GLY ALA GLN GLY HIS ARG LEU VAL ALA GLU VAL ALA SEQRES 2 B 254 ASP ALA ARG LEU ASN PRO THR ALA ARG ALA GLU VAL ASP SEQRES 3 B 254 ARG LEU LEU ALA THR GLU PRO ASP ALA THR LEU ALA SER SEQRES 4 B 254 ILE ALA PRO TRP ALA ASP GLN LEU ARG ALA LYS ASP PRO SEQRES 5 B 254 GLY LEU GLY ARG ARG SER ALA GLY TRP HIS TYR VAL ASN SEQRES 6 B 254 ILE ALA GLU ASP ASN CYS HIS TYR GLU ALA PRO LYS HIS SEQRES 7 B 254 CYS ARG ASN GLY ASN CYS ILE VAL GLU ALA LEU LYS ALA SEQRES 8 B 254 GLN SER THR ILE LEU GLY ASP ARG SER LEU THR ASP GLY SEQRES 9 B 254 GLU ARG LEU GLN ALA LEU LYS PHE VAL VAL HIS LEU VAL SEQRES 10 B 254 GLY ASP ILE HIS GLN PRO MET HIS ALA GLY TYR ALA HIS SEQRES 11 B 254 ASP LYS GLY GLY ASN ASP PHE GLN LEU GLN PHE GLY ASN SEQRES 12 B 254 ARG GLY THR ASN LEU HIS SER LEU TRP ASP SER GLY MET SEQRES 13 B 254 LEU ASN THR ARG LYS LEU ASP ASP ALA GLY TYR LEU PRO SEQRES 14 B 254 LEU LEU GLN SER GLN ARG ALA PRO LYS LEU ALA ARG GLN SEQRES 15 B 254 SER ASN PRO GLN ARG ASP PRO GLN THR TRP ALA GLU ALA SEQRES 16 B 254 SER CYS ARG ILE SER MET GLN ALA GLY VAL TYR PRO ALA SEQRES 17 B 254 THR ARG LYS ILE GLY ASP GLU TYR THR GLU ARG TYR ARG SEQRES 18 B 254 PRO LEU ALA GLU ALA GLN LEU ARG LEU ALA GLY GLU ASN SEQRES 19 B 254 LEU ALA GLN LEU LEU ASN ARG VAL LEU GLY ALA ARG LEU SEQRES 20 B 254 GLU HIS HIS HIS HIS HIS HIS HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET PEG A 406 7 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET GOL B 404 6 HET 5GP B 405 24 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HET SO4 B 409 5 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 6(ZN 2+) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 8 PEG C4 H10 O3 FORMUL 9 SO4 7(O4 S 2-) FORMUL 16 5GP C10 H14 N5 O8 P FORMUL 21 HOH *747(H2 O) HELIX 1 AA1 GLY A 28 ALA A 41 1 14 HELIX 2 AA2 ASN A 44 THR A 57 1 14 HELIX 3 AA3 THR A 62 ALA A 67 1 6 HELIX 4 AA4 PRO A 68 LYS A 76 5 9 HELIX 5 AA5 ASP A 77 ALA A 85 1 9 HELIX 6 AA6 GLY A 86 TYR A 89 5 4 HELIX 7 AA7 ILE A 92 ASN A 96 5 5 HELIX 8 AA8 GLU A 100 CYS A 105 1 6 HELIX 9 AA9 ARG A 106 ASN A 109 5 4 HELIX 10 AB1 CYS A 110 ASP A 124 1 15 HELIX 11 AB2 THR A 128 HIS A 147 1 20 HELIX 12 AB3 GLN A 148 ALA A 152 5 5 HELIX 13 AB4 LEU A 174 SER A 180 1 7 HELIX 14 AB5 SER A 180 THR A 185 1 6 HELIX 15 AB6 ASP A 189 SER A 199 1 11 HELIX 16 AB7 ARG A 213 MET A 227 1 15 HELIX 17 AB8 GLY A 239 GLY A 270 1 32 HELIX 18 AB9 GLY B 28 ALA B 41 1 14 HELIX 19 AC1 ASN B 44 THR B 57 1 14 HELIX 20 AC2 THR B 62 ALA B 67 1 6 HELIX 21 AC3 PRO B 68 ASP B 71 5 4 HELIX 22 AC4 GLN B 72 ASP B 77 1 6 HELIX 23 AC5 ASP B 77 ALA B 85 1 9 HELIX 24 AC6 GLY B 86 TYR B 89 5 4 HELIX 25 AC7 ILE B 92 ASN B 96 5 5 HELIX 26 AC8 GLU B 100 CYS B 105 1 6 HELIX 27 AC9 ARG B 106 ASN B 109 5 4 HELIX 28 AD1 CYS B 110 GLY B 123 1 14 HELIX 29 AD2 THR B 128 HIS B 147 1 20 HELIX 30 AD3 GLN B 148 GLY B 153 5 6 HELIX 31 AD4 LEU B 174 SER B 180 1 7 HELIX 32 AD5 SER B 180 THR B 185 1 6 HELIX 33 AD6 ASP B 189 SER B 199 1 11 HELIX 34 AD7 ARG B 213 MET B 227 1 15 HELIX 35 AD8 GLY B 239 GLY B 270 1 32 SHEET 1 AA1 3 ARG A 170 ASN A 173 0 SHEET 2 AA1 3 GLN A 164 PHE A 167 -1 N PHE A 167 O ARG A 170 SHEET 3 AA1 3 LYS A 237 ILE A 238 1 O ILE A 238 N GLN A 166 SHEET 1 AA2 3 ARG B 170 ASN B 173 0 SHEET 2 AA2 3 GLN B 164 PHE B 167 -1 N LEU B 165 O THR B 172 SHEET 3 AA2 3 LYS B 237 ILE B 238 1 O ILE B 238 N GLN B 166 SSBOND 1 CYS A 97 CYS A 223 1555 1555 2.05 SSBOND 2 CYS A 105 CYS A 110 1555 1555 2.01 SSBOND 3 CYS B 97 CYS B 223 1555 1555 2.08 SSBOND 4 CYS B 105 CYS B 110 1555 1555 2.02 LINK N TRP A 27 ZN ZN A 401 1555 1555 2.13 LINK O TRP A 27 ZN ZN A 401 1555 1555 2.26 LINK NE2 HIS A 32 ZN ZN A 401 1555 1555 2.04 LINK OD1 ASP A 71 ZN ZN A 402 1555 1555 2.36 LINK ND1 HIS A 88 ZN ZN A 402 1555 1555 2.04 LINK NE2 HIS A 141 ZN ZN A 402 1555 1555 2.09 LINK OD1 ASP A 145 ZN ZN A 401 1555 1555 2.08 LINK OD2 ASP A 145 ZN ZN A 402 1555 1555 2.10 LINK NE2 HIS A 151 ZN ZN A 403 1555 1555 2.03 LINK NE2 HIS A 175 ZN ZN A 403 1555 1555 2.02 LINK OD2 ASP A 179 ZN ZN A 403 1555 1555 1.96 LINK NE2 HIS A 275 ZN ZN A 403 1555 1455 1.95 LINK ZN ZN A 401 O HOH A 617 1555 1555 1.95 LINK ZN ZN A 402 O HOH A 617 1555 1555 1.95 LINK N TRP B 27 ZN ZN B 401 1555 1555 2.11 LINK O TRP B 27 ZN ZN B 401 1555 1555 2.27 LINK NE2 HIS B 32 ZN ZN B 401 1555 1555 2.00 LINK OD1 ASP B 71 ZN ZN B 402 1555 1555 2.37 LINK ND1 HIS B 88 ZN ZN B 402 1555 1555 2.04 LINK NE2 HIS B 141 ZN ZN B 402 1555 1555 2.09 LINK OD1 ASP B 145 ZN ZN B 401 1555 1555 2.09 LINK OD2 ASP B 145 ZN ZN B 402 1555 1555 2.05 LINK NE2 HIS B 151 ZN ZN B 403 1555 1555 2.11 LINK NE2 HIS B 175 ZN ZN B 403 1555 1555 2.05 LINK OD1 ASP B 179 ZN ZN B 403 1555 1555 2.58 LINK OD2 ASP B 179 ZN ZN B 403 1555 1555 2.10 LINK ZN ZN B 401 O HOH B1030 1555 1555 1.93 LINK ZN ZN B 402 O HOH B1030 1555 1555 1.99 LINK ZN ZN B 402 O HOH B1039 1555 1555 2.65 LINK ZN ZN B 403 O3' 5GP B 405 1555 1555 2.14 LINK ZN ZN B 403 O HOH B1008 1555 1555 2.08 CRYST1 44.340 72.637 82.940 90.00 102.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022553 0.000000 0.004834 0.00000 SCALE2 0.000000 0.013767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012331 0.00000 CONECT 1 4149 CONECT 4 4149 CONECT 46 4149 CONECT 348 4150 CONECT 502 4150 CONECT 604 1665 CONECT 674 714 CONECT 714 674 CONECT 968 4150 CONECT 994 4149 CONECT 995 4150 CONECT 1058 4151 CONECT 1265 4151 CONECT 1304 4151 CONECT 1665 604 CONECT 2150 4186 CONECT 2153 4186 CONECT 2195 4186 CONECT 2513 4187 CONECT 2645 4187 CONECT 2724 3753 CONECT 2794 2834 CONECT 2795 2835 CONECT 2834 2794 CONECT 2835 2795 CONECT 3074 4187 CONECT 3100 4186 CONECT 3101 4187 CONECT 3158 4188 CONECT 3366 4188 CONECT 3401 4188 CONECT 3402 4188 CONECT 3753 2724 CONECT 4149 1 4 46 994 CONECT 4149 4358 CONECT 4150 348 502 968 995 CONECT 4150 4358 CONECT 4151 1058 1265 1304 CONECT 4152 4153 4154 CONECT 4153 4152 CONECT 4154 4152 4155 4156 CONECT 4155 4154 CONECT 4156 4154 4157 CONECT 4157 4156 CONECT 4158 4159 4160 CONECT 4159 4158 CONECT 4160 4158 4161 4162 CONECT 4161 4160 CONECT 4162 4160 4163 CONECT 4163 4162 CONECT 4164 4165 4166 CONECT 4165 4164 CONECT 4166 4164 4167 CONECT 4167 4166 4168 CONECT 4168 4167 4169 CONECT 4169 4168 4170 CONECT 4170 4169 CONECT 4171 4172 4173 4174 4175 CONECT 4172 4171 CONECT 4173 4171 CONECT 4174 4171 CONECT 4175 4171 CONECT 4176 4177 4178 4179 4180 CONECT 4177 4176 CONECT 4178 4176 CONECT 4179 4176 CONECT 4180 4176 CONECT 4181 4182 4183 4184 4185 CONECT 4182 4181 CONECT 4183 4181 CONECT 4184 4181 CONECT 4185 4181 CONECT 4186 2150 2153 2195 3100 CONECT 4186 4688 CONECT 4187 2513 2645 3074 3101 CONECT 4187 4688 4697 CONECT 4188 3158 3366 3401 3402 CONECT 4188 4204 4666 CONECT 4189 4190 4191 CONECT 4190 4189 CONECT 4191 4189 4192 4193 CONECT 4192 4191 CONECT 4193 4191 4194 CONECT 4194 4193 CONECT 4195 4196 4197 4198 4199 CONECT 4196 4195 CONECT 4197 4195 CONECT 4198 4195 CONECT 4199 4195 4200 CONECT 4200 4199 4201 CONECT 4201 4200 4202 4203 CONECT 4202 4201 4207 CONECT 4203 4201 4204 4205 CONECT 4204 4188 4203 CONECT 4205 4203 4206 4207 CONECT 4206 4205 CONECT 4207 4202 4205 4208 CONECT 4208 4207 4209 4218 CONECT 4209 4208 4210 CONECT 4210 4209 4211 CONECT 4211 4210 4212 4218 CONECT 4212 4211 4213 4214 CONECT 4213 4212 CONECT 4214 4212 4215 CONECT 4215 4214 4216 4217 CONECT 4216 4215 CONECT 4217 4215 4218 CONECT 4218 4208 4211 4217 CONECT 4219 4220 4221 4222 4223 CONECT 4220 4219 CONECT 4221 4219 CONECT 4222 4219 CONECT 4223 4219 CONECT 4224 4225 4226 4227 4228 CONECT 4225 4224 CONECT 4226 4224 CONECT 4227 4224 CONECT 4228 4224 CONECT 4229 4230 4231 4232 4233 CONECT 4230 4229 CONECT 4231 4229 CONECT 4232 4229 CONECT 4233 4229 CONECT 4234 4235 4236 4237 4238 CONECT 4235 4234 CONECT 4236 4234 CONECT 4237 4234 CONECT 4238 4234 CONECT 4358 4149 4150 CONECT 4666 4188 CONECT 4688 4186 4187 CONECT 4697 4187 MASTER 409 0 18 35 6 0 0 6 4709 2 132 40 END