HEADER TRANSFERASE 12-MAR-24 9EN0 TITLE KOD-H4 DNA POLYMERASE MUTANT IN A UNPRODUCTIVE BINARY COMPLEX WITH TITLE 2 DNA:DNA CONTAINING SIX HNA NUCLEOTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*AP*CP*(6HT)P*(6HG)P*(6HT)P*(6HG)P*(6HG)P*(6HC) COMPND 8 P*CP*GP*TP*GP*GP*TP*C)-3'); COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*CP*A)-3'); COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE, XNA, MODIFIED NUCLEOTIDES, REVERSE TRANSCRIPTASE, ATNA, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.GUTFREUND,K.BETZ REVDAT 1 24-SEP-25 9EN0 0 JRNL AUTH C.GUTFREUND,K.BETZ JRNL TITL CRYSTALLOGRAPHIC INSIGHTS INTO A MUTANT ARCHAEAL B-FAMILY JRNL TITL 2 POLYMERASE PROCESSING HNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 74166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7200 - 6.9100 0.97 3385 141 0.1394 0.1767 REMARK 3 2 6.9100 - 5.4900 0.96 3343 139 0.1845 0.2839 REMARK 3 3 5.4900 - 4.7900 0.97 3392 148 0.1658 0.2260 REMARK 3 4 4.7900 - 4.3600 0.97 3380 141 0.1571 0.2373 REMARK 3 5 4.3600 - 4.0400 0.98 3427 139 0.1776 0.2414 REMARK 3 6 4.0400 - 3.8100 0.98 3405 143 0.2045 0.2613 REMARK 3 7 3.8100 - 3.6200 0.97 3398 138 0.2164 0.2910 REMARK 3 8 3.6200 - 3.4600 0.95 3283 140 0.2381 0.2663 REMARK 3 9 3.4600 - 3.3300 0.96 3364 140 0.2489 0.3601 REMARK 3 10 3.3200 - 3.2100 0.96 3340 139 0.2816 0.3290 REMARK 3 11 3.2100 - 3.1100 0.97 3421 141 0.3016 0.3732 REMARK 3 12 3.1100 - 3.0200 0.97 3390 145 0.3070 0.3485 REMARK 3 13 3.0200 - 2.9400 0.98 3412 150 0.3108 0.4116 REMARK 3 14 2.9400 - 2.8700 0.98 3339 139 0.3169 0.2991 REMARK 3 15 2.8700 - 2.8000 0.98 3502 146 0.3236 0.3449 REMARK 3 16 2.8000 - 2.7400 0.98 3370 140 0.3406 0.3712 REMARK 3 17 2.7400 - 2.6900 0.98 3443 144 0.3555 0.3463 REMARK 3 18 2.6900 - 2.6400 0.98 3425 141 0.3659 0.3875 REMARK 3 19 2.6400 - 2.5900 0.98 3383 138 0.4040 0.4505 REMARK 3 20 2.5900 - 2.5500 0.97 3416 145 0.4357 0.5144 REMARK 3 21 2.5500 - 2.5100 0.96 3371 140 0.4337 0.5234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.567 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.785 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6985 REMARK 3 ANGLE : 0.656 9513 REMARK 3 CHIRALITY : 0.042 1022 REMARK 3 PLANARITY : 0.005 1120 REMARK 3 DIHEDRAL : 21.179 2706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 6.5338 -4.1293 18.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.4162 T22: 0.3808 REMARK 3 T33: 0.4674 T12: -0.0176 REMARK 3 T13: -0.0261 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 0.7093 L22: 0.6071 REMARK 3 L33: 1.1768 L12: 0.0426 REMARK 3 L13: -0.6729 L23: 0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.0992 S13: -0.0522 REMARK 3 S21: -0.2290 S22: 0.0709 S23: -0.0552 REMARK 3 S31: 0.0249 S32: 0.0797 S33: -0.0400 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000020 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 44.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 1.820 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 4000, 20% V/V GLYCEROL, REMARK 280 0.02 M D-GLUCOSE, 0.02 M D-MANNOSE, 0.02 M D-GALACTOSE, 0.02 M L- REMARK 280 FUCOSE, 0.02 M D-XYLOSE, 0.02 M N-ACETYL-D-GLUCOSAMINE, 0.1 M REMARK 280 MES/IMIDAZOLE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.15600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 386 REMARK 465 GLY A 387 REMARK 465 TYR A 388 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 THR A 760 REMARK 465 ARG A 761 REMARK 465 GLN A 762 REMARK 465 VAL A 763 REMARK 465 GLY A 764 REMARK 465 LEU A 765 REMARK 465 SER A 766 REMARK 465 ALA A 767 REMARK 465 TRP A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 GLY A 773 REMARK 465 THR A 774 REMARK 465 DA T 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 608 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 6HT T 4 O3' - P - O5' ANGL. DEV. = 13.8 DEGREES REMARK 500 6HT T 4 C3' - O3' - P ANGL. DEV. = 13.6 DEGREES REMARK 500 6HG T 7 O3' - P - OP2 ANGL. DEV. = 8.1 DEGREES REMARK 500 6HG T 7 C3' - O3' - P ANGL. DEV. = 10.6 DEGREES REMARK 500 6HG T 8 O3' - P - OP1 ANGL. DEV. = 12.4 DEGREES REMARK 500 6HC T 9 O3' - P - OP2 ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 8 -169.12 -117.46 REMARK 500 HIS A 59 -138.56 59.54 REMARK 500 ALA A 231 58.32 -90.85 REMARK 500 TYR A 273 58.58 -119.09 REMARK 500 GLN A 436 -58.69 71.02 REMARK 500 TRP A 504 43.28 -87.72 REMARK 500 CYS A 506 96.11 -164.50 REMARK 500 THR A 541 -65.93 69.54 REMARK 500 GLU A 609 119.59 60.24 REMARK 500 ILE A 610 -24.84 -154.22 REMARK 500 ARG A 612 101.05 -49.84 REMARK 500 GLN A 736 -60.79 -136.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 804 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 37 OH REMARK 620 2 TYR A 39 OH 89.9 REMARK 620 3 GLU A 111 OE1 115.7 105.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 161 OG REMARK 620 2 SER A 312 OG 69.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 211 O REMARK 620 2 ALA A 217 N 114.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8S84 RELATED DB: PDB REMARK 900 KOD-H4, DNA:DNA, TERNARY, NON-HYDROLYZABLE TRIPHOSPHATE REMARK 900 RELATED ID: 8S8T RELATED DB: PDB REMARK 900 KOD-H4, DNA:DNA, BINARY, REMARK 900 RELATED ID: 8S87 RELATED DB: PDB REMARK 900 KOD-H4, APO STRUCTURE REMARK 900 RELATED ID: 9EMF RELATED DB: PDB REMARK 900 KOD-H4, BINARY, ONE HNA NUCLEOTIDE REMARK 900 RELATED ID: 9EMH RELATED DB: PDB REMARK 900 KOD-H4, BINARY, TWO HNA NUCLEOTIDES REMARK 900 RELATED ID: 9EMI RELATED DB: PDB REMARK 900 KOD-H4, TERNARY, SIX HNA NUCLEOTIDES, NON-HYDROLYZABLE TRIPHOSPHATE DBREF 9EN0 A 1 774 UNP D0VWU9 D0VWU9_THEKO 1 774 DBREF 9EN0 T 1 16 PDB 9EN0 9EN0 1 16 DBREF 9EN0 P 1 13 PDB 9EN0 9EN0 1 13 SEQADV 9EN0 GLN A 93 UNP D0VWU9 VAL 93 CONFLICT SEQADV 9EN0 THR A 114 UNP D0VWU9 ILE 114 CONFLICT SEQADV 9EN0 ALA A 141 UNP D0VWU9 ASP 141 CONFLICT SEQADV 9EN0 ALA A 143 UNP D0VWU9 GLU 143 CONFLICT SEQADV 9EN0 HIS A 147 UNP D0VWU9 GLU 147 CONFLICT SEQADV 9EN0 LYS A 383 UNP D0VWU9 SER 383 CONFLICT SEQADV 9EN0 GLY A 429 UNP D0VWU9 LYS 429 CONFLICT SEQADV 9EN0 LEU A 445 UNP D0VWU9 PHE 445 CONFLICT SEQADV 9EN0 LEU A 485 UNP D0VWU9 ALA 485 CONFLICT SEQADV 9EN0 VAL A 493 UNP D0VWU9 TYR 493 CONFLICT SEQADV 9EN0 HIS A 496 UNP D0VWU9 TYR 496 CONFLICT SEQADV 9EN0 MET A 497 UNP D0VWU9 TYR 497 CONFLICT SEQADV 9EN0 PHE A 499 UNP D0VWU9 TYR 499 CONFLICT SEQADV 9EN0 GLU A 500 UNP D0VWU9 ALA 500 CONFLICT SEQADV 9EN0 ASN A 501 UNP D0VWU9 ARG 501 CONFLICT SEQADV 9EN0 LEU A 521 UNP D0VWU9 ILE 521 CONFLICT SEQADV 9EN0 LYS A 584 UNP D0VWU9 GLU 584 CONFLICT SEQADV 9EN0 LYS A 664 UNP D0VWU9 GLU 664 CONFLICT SEQADV 9EN0 ARG A 726 UNP D0VWU9 LYS 726 CONFLICT SEQADV 9EN0 LYS A 735 UNP D0VWU9 ASN 735 CONFLICT SEQRES 1 A 774 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 774 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 774 LYS ILE GLU TYR ASP ARG THR PHE GLU PRO TYR PHE TYR SEQRES 4 A 774 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU GLU VAL LYS SEQRES 5 A 774 LYS ILE THR ALA GLU ARG HIS GLY THR VAL VAL THR VAL SEQRES 6 A 774 LYS ARG VAL GLU LYS VAL GLN LYS LYS PHE LEU GLY ARG SEQRES 7 A 774 PRO VAL GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 774 ASP GLN PRO ALA ILE ARG ASP LYS ILE ARG GLU HIS PRO SEQRES 9 A 774 ALA VAL ILE ASP ILE TYR GLU TYR ASP THR PRO PHE ALA SEQRES 10 A 774 LYS ARG TYR LEU ILE ASP LYS GLY LEU VAL PRO MET GLU SEQRES 11 A 774 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 774 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 774 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 774 VAL ILE THR TRP LYS ASN VAL ASP LEU PRO TYR VAL ASP SEQRES 15 A 774 VAL VAL SER THR GLU ARG GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 774 ARG VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 774 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 774 ARG CYS GLU LYS LEU GLY ILE ASN PHE ALA LEU GLY ARG SEQRES 19 A 774 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 774 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 774 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 774 THR LEU GLU ALA VAL TYR GLU ALA VAL PHE GLY GLN PRO SEQRES 23 A 774 LYS GLU LYS VAL TYR ALA GLU GLU ILE THR THR ALA TRP SEQRES 24 A 774 GLU THR GLY GLU ASN LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 774 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 774 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU ILE GLY SEQRES 27 A 774 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 774 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 774 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU LYS GLU LEU SEQRES 30 A 774 ALA ARG ARG ARG GLN LYS TYR GLU GLY GLY TYR VAL LYS SEQRES 31 A 774 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 774 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 774 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS GLY SEQRES 34 A 774 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS ARG PHE CYS SEQRES 35 A 774 LYS ASP LEU PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 774 LEU LEU GLU GLU ARG GLN LYS ILE LYS LYS LYS MET LYS SEQRES 37 A 774 ALA THR ILE ASP PRO ILE GLU ARG LYS LEU LEU ASP TYR SEQRES 38 A 774 ARG GLN ARG LEU ILE LYS ILE LEU ALA ASN SER VAL TYR SEQRES 39 A 774 GLY HIS MET GLY PHE GLU ASN ALA ARG TRP TYR CYS LYS SEQRES 40 A 774 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLU TYR SEQRES 41 A 774 LEU THR MET THR ILE LYS GLU ILE GLU GLU LYS TYR GLY SEQRES 42 A 774 PHE LYS VAL ILE TYR SER ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 774 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 774 ALA MET GLU PHE LEU LYS TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 774 GLY ALA LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG SEQRES 46 A 774 GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 774 GLU GLU GLY LYS ILE THR THR ARG GLY LEU GLU ILE VAL SEQRES 48 A 774 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 774 ARG VAL LEU GLU ALA LEU LEU LYS ASP GLY ASP VAL GLU SEQRES 50 A 774 LYS ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 774 SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE HIS SEQRES 52 A 774 LYS GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR SEQRES 53 A 774 GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 774 GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 774 VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 774 PRO PHE ASP GLU PHE ASP PRO THR LYS HIS ARG TYR ASP SEQRES 57 A 774 ALA GLU TYR TYR ILE GLU LYS GLN VAL LEU PRO ALA VAL SEQRES 58 A 774 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 774 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU SER ALA SEQRES 60 A 774 TRP LEU LYS PRO LYS GLY THR SEQRES 1 T 16 DA DA DC 6HT 6HG 6HT 6HG 6HG 6HC DC DG DT DG SEQRES 2 T 16 DG DT DC SEQRES 1 P 13 DG DA DC DC DA DC DG DG DC DC DA DC DA HET 6HT T 4 21 HET 6HG T 5 23 HET 6HT T 6 21 HET 6HG T 7 23 HET 6HG T 8 23 HET 6HC T 9 20 HET MG A 801 1 HET MG A 802 1 HET MG A 803 1 HET MG A 804 1 HET GOL A 805 6 HET GOL A 806 6 HET GOL A 807 6 HET GOL T 101 6 HETNAM 6HT 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(THYMIN-1-YL)-6'-O- HETNAM 2 6HT PHOSPHORYL-D-ARABINO-HEXITOL HETNAM 6HG 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(GUANIN-9-YL)-6'-O- HETNAM 2 6HG PHOSPHORYL-D-ARABINO-HEXITOL HETNAM 6HC 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(CYTOSIN-1-YL)-6'-O- HETNAM 2 6HC PHOSPHORYL-D-ARABINO-HEXITOL HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 6HT 2(C11 H17 N2 O8 P) FORMUL 2 6HG 3(C11 H16 N5 O7 P) FORMUL 2 6HC C10 H16 N3 O7 P FORMUL 4 MG 4(MG 2+) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 HOH *12(H2 O) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 53 1 7 HELIX 3 AA3 HIS A 89 GLN A 91 5 3 HELIX 4 AA4 ASP A 92 HIS A 103 1 12 HELIX 5 AA5 PRO A 115 LYS A 124 1 10 HELIX 6 AA6 THR A 186 ASP A 202 1 17 HELIX 7 AA7 PHE A 214 GLY A 227 1 14 HELIX 8 AA8 LEU A 260 ILE A 268 1 9 HELIX 9 AA9 THR A 274 GLY A 284 1 11 HELIX 10 AB1 TYR A 291 GLY A 302 1 12 HELIX 11 AB2 ASN A 304 GLY A 338 1 35 HELIX 12 AB3 SER A 340 SER A 345 1 6 HELIX 13 AB4 SER A 348 ARG A 364 1 17 HELIX 14 AB5 ASP A 373 ARG A 380 1 8 HELIX 15 AB6 SER A 407 HIS A 416 1 10 HELIX 16 AB7 GLY A 447 ALA A 469 1 23 HELIX 17 AB8 ASP A 472 MET A 497 1 26 HELIX 18 AB9 CYS A 506 LYS A 531 1 26 HELIX 19 AC1 ASP A 552 LEU A 571 1 20 HELIX 20 AC2 SER A 616 LYS A 632 1 17 HELIX 21 AC3 ASP A 635 LYS A 652 1 18 HELIX 22 AC4 PRO A 656 VAL A 661 5 6 HELIX 23 AC5 ASP A 669 TYR A 673 5 5 HELIX 24 AC6 GLY A 677 GLY A 690 1 14 HELIX 25 AC7 ARG A 709 ARG A 713 1 5 HELIX 26 AC8 ASP A 718 PHE A 720 5 3 HELIX 27 AC9 ASP A 728 LYS A 735 1 8 HELIX 28 AD1 GLN A 736 ALA A 747 1 12 HELIX 29 AD2 ARG A 751 LEU A 755 5 5 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O LYS A 13 N GLU A 10 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O GLU A 25 N GLU A 22 SHEET 1 AA2 4 VAL A 65 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 PHE A 87 -1 O TYR A 86 N ARG A 67 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N ALA A 40 O TRP A 83 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ASP A 108 N LEU A 41 SHEET 1 AA3 2 ALA A 56 ARG A 58 0 SHEET 2 AA3 2 THR A 61 VAL A 63 -1 O VAL A 63 N ALA A 56 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N ILE A 160 O ILE A 171 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 139 O ALA A 163 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O ILE A 207 N PHE A 140 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O PHE A 258 N LEU A 206 SHEET 1 AA5 2 LYS A 240 MET A 244 0 SHEET 2 AA5 2 ARG A 247 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 6 LYS A 535 SER A 539 0 SHEET 2 AA6 6 GLY A 543 THR A 547 -1 O PHE A 545 N TYR A 538 SHEET 3 AA6 6 LEU A 396 PHE A 405 -1 N VAL A 401 O ALA A 546 SHEET 4 AA6 6 LEU A 577 THR A 590 -1 O GLU A 578 N ASP A 404 SHEET 5 AA6 6 LYS A 593 ILE A 597 -1 O ALA A 595 N PHE A 587 SHEET 6 AA6 6 ILE A 603 ARG A 606 -1 O THR A 604 N VAL A 596 SHEET 1 AA7 2 TYR A 431 VAL A 433 0 SHEET 2 AA7 2 ARG A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SHEET 1 AA8 3 ILE A 662 GLN A 665 0 SHEET 2 AA8 3 VAL A 698 VAL A 703 -1 O ILE A 699 N LYS A 664 SHEET 3 AA8 3 ALA A 714 PRO A 716 -1 O ILE A 715 N ILE A 702 SSBOND 1 CYS A 428 CYS A 442 1555 1555 2.04 SSBOND 2 CYS A 506 CYS A 509 1555 1555 2.04 LINK O3' DC T 3 P 6HT T 4 1555 1555 1.56 LINK O3' 6HT T 4 P 6HG T 5 1555 1555 1.56 LINK O3' 6HG T 5 P 6HT T 6 1555 1555 1.56 LINK O3' 6HT T 6 P 6HG T 7 1555 1555 1.56 LINK O3' 6HG T 7 P 6HG T 8 1555 1555 1.56 LINK O3' 6HG T 8 P 6HC T 9 1555 1555 1.56 LINK O3' 6HC T 9 P DC T 10 1555 1555 1.60 LINK OH TYR A 37 MG MG A 804 1555 1555 2.78 LINK OH TYR A 39 MG MG A 804 1555 1555 2.90 LINK OE1 GLU A 111 MG MG A 804 1555 1555 2.82 LINK OG SER A 161 MG MG A 801 1555 1555 2.88 LINK O GLY A 211 MG MG A 802 1555 1555 2.95 LINK N ALA A 217 MG MG A 802 1555 1555 2.70 LINK OG SER A 312 MG MG A 801 1555 1555 2.66 LINK NH2 ARG A 503 MG MG A 803 1555 1555 2.67 CRYST1 69.081 112.312 77.971 90.00 108.50 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014476 0.000000 0.004844 0.00000 SCALE2 0.000000 0.008904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013524 0.00000 CONECT 318 6775 CONECT 341 6775 CONECT 934 6775 CONECT 1332 6772 CONECT 1745 6773 CONECT 1792 6773 CONECT 2575 6772 CONECT 3513 3623 CONECT 3623 3513 CONECT 4122 6774 CONECT 4154 4178 CONECT 4178 4154 CONECT 6223 6234 CONECT 6234 6223 6235 6236 6237 CONECT 6235 6234 CONECT 6236 6234 CONECT 6237 6234 6238 CONECT 6238 6237 6239 CONECT 6239 6238 6240 6241 CONECT 6240 6239 6245 CONECT 6241 6239 6242 6243 CONECT 6242 6241 6255 CONECT 6243 6241 6244 CONECT 6244 6243 6245 6246 CONECT 6245 6240 6244 CONECT 6246 6244 6247 6254 CONECT 6247 6246 6248 6249 CONECT 6248 6247 CONECT 6249 6247 6250 CONECT 6250 6249 6251 6252 CONECT 6251 6250 CONECT 6252 6250 6253 6254 CONECT 6253 6252 CONECT 6254 6246 6252 CONECT 6255 6242 6256 6257 6258 CONECT 6256 6255 CONECT 6257 6255 CONECT 6258 6255 6259 CONECT 6259 6258 6260 CONECT 6260 6259 6261 6262 CONECT 6261 6260 6266 CONECT 6262 6260 6263 6264 CONECT 6263 6262 6278 CONECT 6264 6262 6265 CONECT 6265 6264 6266 6267 CONECT 6266 6261 6265 CONECT 6267 6265 6268 6277 CONECT 6268 6267 6269 CONECT 6269 6268 6270 CONECT 6270 6269 6271 6277 CONECT 6271 6270 6272 6273 CONECT 6272 6271 CONECT 6273 6271 6274 CONECT 6274 6273 6275 6276 CONECT 6275 6274 CONECT 6276 6274 6277 CONECT 6277 6267 6270 6276 CONECT 6278 6263 6279 6280 6281 CONECT 6279 6278 CONECT 6280 6278 CONECT 6281 6278 6282 CONECT 6282 6281 6283 CONECT 6283 6282 6284 6285 CONECT 6284 6283 6289 CONECT 6285 6283 6286 6287 CONECT 6286 6285 6299 CONECT 6287 6285 6288 CONECT 6288 6287 6289 6290 CONECT 6289 6284 6288 CONECT 6290 6288 6291 6298 CONECT 6291 6290 6292 6293 CONECT 6292 6291 CONECT 6293 6291 6294 CONECT 6294 6293 6295 6296 CONECT 6295 6294 CONECT 6296 6294 6297 6298 CONECT 6297 6296 CONECT 6298 6290 6296 CONECT 6299 6286 6300 6301 6302 CONECT 6300 6299 CONECT 6301 6299 CONECT 6302 6299 6303 CONECT 6303 6302 6304 CONECT 6304 6303 6305 6306 CONECT 6305 6304 6310 CONECT 6306 6304 6307 6308 CONECT 6307 6306 6322 CONECT 6308 6306 6309 CONECT 6309 6308 6310 6311 CONECT 6310 6305 6309 CONECT 6311 6309 6312 6321 CONECT 6312 6311 6313 CONECT 6313 6312 6314 CONECT 6314 6313 6315 6321 CONECT 6315 6314 6316 6317 CONECT 6316 6315 CONECT 6317 6315 6318 CONECT 6318 6317 6319 6320 CONECT 6319 6318 CONECT 6320 6318 6321 CONECT 6321 6311 6314 6320 CONECT 6322 6307 6323 6324 6325 CONECT 6323 6322 CONECT 6324 6322 CONECT 6325 6322 6326 CONECT 6326 6325 6327 CONECT 6327 6326 6328 6329 CONECT 6328 6327 6333 CONECT 6329 6327 6330 6331 CONECT 6330 6329 6345 CONECT 6331 6329 6332 CONECT 6332 6331 6333 6334 CONECT 6333 6328 6332 CONECT 6334 6332 6335 6344 CONECT 6335 6334 6336 CONECT 6336 6335 6337 CONECT 6337 6336 6338 6344 CONECT 6338 6337 6339 6340 CONECT 6339 6338 CONECT 6340 6338 6341 CONECT 6341 6340 6342 6343 CONECT 6342 6341 CONECT 6343 6341 6344 CONECT 6344 6334 6337 6343 CONECT 6345 6330 6346 6347 6348 CONECT 6346 6345 CONECT 6347 6345 CONECT 6348 6345 6349 CONECT 6349 6348 6350 CONECT 6350 6349 6351 6352 CONECT 6351 6350 6356 CONECT 6352 6350 6353 6354 CONECT 6353 6352 6365 CONECT 6354 6352 6355 CONECT 6355 6354 6356 6357 CONECT 6356 6351 6355 CONECT 6357 6355 6358 6364 CONECT 6358 6357 6359 6360 CONECT 6359 6358 CONECT 6360 6358 6361 CONECT 6361 6360 6362 6363 CONECT 6362 6361 CONECT 6363 6361 6364 CONECT 6364 6357 6363 CONECT 6365 6353 CONECT 6772 1332 2575 CONECT 6773 1745 1792 CONECT 6774 4122 CONECT 6775 318 341 934 CONECT 6776 6777 6778 CONECT 6777 6776 CONECT 6778 6776 6779 6780 CONECT 6779 6778 CONECT 6780 6778 6781 CONECT 6781 6780 CONECT 6782 6783 6784 CONECT 6783 6782 CONECT 6784 6782 6785 6786 CONECT 6785 6784 CONECT 6786 6784 6787 CONECT 6787 6786 CONECT 6788 6789 6790 CONECT 6789 6788 CONECT 6790 6788 6791 6792 CONECT 6791 6790 CONECT 6792 6790 6793 CONECT 6793 6792 CONECT 6794 6795 6796 CONECT 6795 6794 CONECT 6796 6794 6797 6798 CONECT 6797 6796 CONECT 6798 6796 6799 CONECT 6799 6798 MASTER 344 0 14 29 28 0 0 6 6808 3 173 63 END