HEADER CELL ADHESION 12-MAR-24 9EN2 TITLE CRYSTAL STRUCTURE OF THE METALLOPROTEINASE ENHANCER PCPE-1 COMPLEXED TITLE 2 WITH NANOBODIES VHH-H4 AND VHH-I5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROCOLLAGEN C-ENDOPEPTIDASE ENHANCER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROCOLLAGEN COOH-TERMINAL PROTEINASE ENHANCER 1,PCPE-1, COMPND 5 PROCOLLAGEN C-PROTEINASE ENHANCER 1,TYPE 1 PROCOLLAGEN C-PROTEINASE COMPND 6 ENHANCER PROTEIN,TYPE I PROCOLLAGEN COOH-TERMINAL PROTEINASE COMPND 7 ENHANCER; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: VHH-H4; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: VHH-I5; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCOLCE, PCPE1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: 293-F; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 16 ORGANISM_TAXID: 9844; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COLLAGEN, STRUCTURAL PROTEIN, EXTRACELLULAR MATRIX, FIBROSIS, KEYWDS 2 NANOBODIES, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR P.LAGOUTTE,V.GUEGUEN-CHAIGNON,J.-M.BOURHIS,S.VADON-LE GOFF REVDAT 2 17-JUL-24 9EN2 1 JRNL REVDAT 1 03-JUL-24 9EN2 0 JRNL AUTH P.LAGOUTTE,J.M.BOURHIS,N.MARIANO,V.GUEGUEN-CHAIGNON, JRNL AUTH 2 D.VANDROUX,C.MOALI,S.VADON-LE GOFF JRNL TITL MONO- AND BI-SPECIFIC NANOBODIES TARGETING THE CUB DOMAINS JRNL TITL 2 OF PCPE-1 REDUCE THE PROTEOLYTIC PROCESSING OF FIBRILLAR JRNL TITL 3 PROCOLLAGENS. JRNL REF J.MOL.BIOL. V. 436 68667 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38901640 JRNL DOI 10.1016/J.JMB.2024.168667 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210322 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.03300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 50 MM L-ARGININAMIDE REMARK 280 DIHYDROCHLORIDE, 50 MM SPERMINE, 50 MM SODIUM CACODYLATE PH 6.5, REMARK 280 50 MM POTASSIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.38550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.97250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.38550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.97250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 ILE A -19 REMARK 465 LEU A -18 REMARK 465 PRO A -17 REMARK 465 SER A -16 REMARK 465 PRO A -15 REMARK 465 GLY A -14 REMARK 465 MET A -13 REMARK 465 PRO A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 SER A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 SER A -5 REMARK 465 LEU A -4 REMARK 465 LEU A -3 REMARK 465 SER A -2 REMARK 465 VAL A -1 REMARK 465 LEU A 0 REMARK 465 LEU A 1 REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 CYS A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 LEU A 16 REMARK 465 GLU A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 GLY A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 GLN A 26 REMARK 465 THR A 27 REMARK 465 PRO A 28 REMARK 465 ASN A 29 REMARK 465 TYR A 30 REMARK 465 SER A 152 REMARK 465 GLY A 153 REMARK 465 THR A 154 REMARK 465 GLU A 155 REMARK 465 HIS A 156 REMARK 465 THR A 277 REMARK 465 LEU A 278 REMARK 465 GLY A 279 REMARK 465 THR A 280 REMARK 465 MET B -19 REMARK 465 LYS B -18 REMARK 465 TYR B -17 REMARK 465 LEU B -16 REMARK 465 LEU B -15 REMARK 465 PRO B -14 REMARK 465 THR B -13 REMARK 465 ALA B -12 REMARK 465 ALA B -11 REMARK 465 ALA B -10 REMARK 465 GLY B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 LEU B -6 REMARK 465 LEU B -5 REMARK 465 ALA B -4 REMARK 465 ALA B -3 REMARK 465 GLN B -2 REMARK 465 PRO B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 124 REMARK 465 ALA B 125 REMARK 465 ALA B 126 REMARK 465 ALA B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 GLY B 134 REMARK 465 MET C -21 REMARK 465 LYS C -20 REMARK 465 TYR C -19 REMARK 465 LEU C -18 REMARK 465 LEU C -17 REMARK 465 PRO C -16 REMARK 465 THR C -15 REMARK 465 ALA C -14 REMARK 465 ALA C -13 REMARK 465 ALA C -12 REMARK 465 GLY C -11 REMARK 465 LEU C -10 REMARK 465 LEU C -9 REMARK 465 LEU C -8 REMARK 465 LEU C -7 REMARK 465 ALA C -6 REMARK 465 ALA C -5 REMARK 465 GLN C -4 REMARK 465 PRO C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 40 O HOH A 401 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 85 CD GLU A 85 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 169 CA - CB - OG1 ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG C 66 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 83 72.94 -151.44 REMARK 500 TYR A 92 -74.08 -81.60 REMARK 500 THR A 137 115.78 70.02 REMARK 500 ASN A 174 -9.08 79.26 REMARK 500 ASP A 210 138.16 -172.88 REMARK 500 TYR A 215 -95.23 -98.58 REMARK 500 VAL A 261 112.12 62.59 REMARK 500 VAL B 50 -71.36 -134.96 REMARK 500 ASN B 77 -133.65 41.95 REMARK 500 ALA B 95 169.73 175.39 REMARK 500 ALA C 91 169.14 179.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 356 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE1 REMARK 620 2 ASP A 93 OD1 91.4 REMARK 620 3 ASP A 93 OD2 81.3 50.9 REMARK 620 4 ASP A 134 OD1 95.7 73.3 123.8 REMARK 620 5 GLY A 136 O 87.9 152.6 155.0 79.4 REMARK 620 6 THR A 137 O 86.3 130.8 80.4 155.8 76.5 REMARK 620 7 HOH A 488 O 175.4 93.2 101.6 85.7 88.0 90.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 208 OE1 REMARK 620 2 ASP A 216 OD1 85.0 REMARK 620 3 ASP A 216 OD2 84.9 54.3 REMARK 620 4 ASP A 258 OD1 98.2 77.4 131.3 REMARK 620 5 SER A 260 O 92.1 145.3 160.0 68.8 REMARK 620 6 VAL A 261 O 90.4 137.0 82.7 145.3 77.5 REMARK 620 7 HOH A 409 O 167.6 84.8 83.3 86.4 100.3 92.3 REMARK 620 N 1 2 3 4 5 6 DBREF 9EN2 A 25 277 UNP Q15113 PCOC1_HUMAN 25 277 DBREF 9EN2 B -19 134 PDB 9EN2 9EN2 -19 134 DBREF 9EN2 C -21 122 PDB 9EN2 9EN2 -21 122 SEQADV 9EN2 MET A -21 UNP Q15113 INITIATING METHIONINE SEQADV 9EN2 GLY A -20 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 ILE A -19 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A -18 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 PRO A -17 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 SER A -16 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 PRO A -15 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLY A -14 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 MET A -13 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 PRO A -12 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 ALA A -11 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A -10 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A -9 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 SER A -8 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A -7 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 VAL A -6 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 SER A -5 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A -4 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A -3 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 SER A -2 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 VAL A -1 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A 0 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A 1 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 MET A 2 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLY A 3 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 CYS A 4 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 VAL A 5 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 ALA A 6 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLU A 7 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 THR A 8 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLY A 9 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 HIS A 10 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 HIS A 11 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 HIS A 12 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 HIS A 13 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 HIS A 14 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 HIS A 15 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A 16 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLU A 17 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 VAL A 18 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 LEU A 19 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 PHE A 20 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLN A 21 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLY A 22 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 PRO A 23 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 ALA A 24 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 ALA A 31 UNP Q15113 THR 31 CONFLICT SEQADV 9EN2 LEU A 278 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 GLY A 279 UNP Q15113 EXPRESSION TAG SEQADV 9EN2 THR A 280 UNP Q15113 EXPRESSION TAG SEQRES 1 A 302 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 A 302 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 A 302 VAL ALA GLU THR GLY HIS HIS HIS HIS HIS HIS LEU GLU SEQRES 4 A 302 VAL LEU PHE GLN GLY PRO ALA GLY GLN THR PRO ASN TYR SEQRES 5 A 302 ALA ARG PRO VAL PHE LEU CYS GLY GLY ASP VAL LYS GLY SEQRES 6 A 302 GLU SER GLY TYR VAL ALA SER GLU GLY PHE PRO ASN LEU SEQRES 7 A 302 TYR PRO PRO ASN LYS GLU CYS ILE TRP THR ILE THR VAL SEQRES 8 A 302 PRO GLU GLY GLN THR VAL SER LEU SER PHE ARG VAL PHE SEQRES 9 A 302 ASP LEU GLU LEU HIS PRO ALA CYS ARG TYR ASP ALA LEU SEQRES 10 A 302 GLU VAL PHE ALA GLY SER GLY THR SER GLY GLN ARG LEU SEQRES 11 A 302 GLY ARG PHE CYS GLY THR PHE ARG PRO ALA PRO LEU VAL SEQRES 12 A 302 ALA PRO GLY ASN GLN VAL THR LEU ARG MET THR THR ASP SEQRES 13 A 302 GLU GLY THR GLY GLY ARG GLY PHE LEU LEU TRP TYR SER SEQRES 14 A 302 GLY ARG ALA THR SER GLY THR GLU HIS GLN PHE CYS GLY SEQRES 15 A 302 GLY ARG LEU GLU LYS ALA GLN GLY THR LEU THR THR PRO SEQRES 16 A 302 ASN TRP PRO GLU SER ASP TYR PRO PRO GLY ILE SER CYS SEQRES 17 A 302 SER TRP HIS ILE ILE ALA PRO PRO ASP GLN VAL ILE ALA SEQRES 18 A 302 LEU THR PHE GLU LYS PHE ASP LEU GLU PRO ASP THR TYR SEQRES 19 A 302 CYS ARG TYR ASP SER VAL SER VAL PHE ASN GLY ALA VAL SEQRES 20 A 302 SER ASP ASP SER ARG ARG LEU GLY LYS PHE CYS GLY ASP SEQRES 21 A 302 ALA VAL PRO GLY SER ILE SER SER GLU GLY ASN GLU LEU SEQRES 22 A 302 LEU VAL GLN PHE VAL SER ASP LEU SER VAL THR ALA ASP SEQRES 23 A 302 GLY PHE SER ALA SER TYR LYS THR LEU PRO ARG GLY THR SEQRES 24 A 302 LEU GLY THR SEQRES 1 B 154 MET LYS TYR LEU LEU PRO THR ALA ALA ALA GLY LEU LEU SEQRES 2 B 154 LEU LEU ALA ALA GLN PRO ALA MET ALA GLU VAL GLN LEU SEQRES 3 B 154 GLN ALA SER GLY GLY GLY PHE VAL GLN PRO GLY GLY SER SEQRES 4 B 154 LEU ARG LEU SER CYS ALA ALA SER GLY PHE THR SER GLU SEQRES 5 B 154 ILE SER ASN MET GLY TRP PHE ARG GLN ALA PRO GLY LYS SEQRES 6 B 154 GLU ARG GLU PHE VAL SER ALA ILE SER GLY THR HIS THR SEQRES 7 B 154 THR GLN THR TYR TYR ALA ASP SER VAL LYS GLY ARG PHE SEQRES 8 B 154 THR ILE SER ARG ASP ASN SER LYS ASN THR VAL TYR LEU SEQRES 9 B 154 GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA THR TYR SEQRES 10 B 154 TYR CYS ALA ALA GLU GLN ASP MET SER ASP LEU TRP LEU SEQRES 11 B 154 GLY SER TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 12 B 154 SER ALA ALA ALA HIS HIS HIS HIS HIS HIS GLY SEQRES 1 C 144 MET LYS TYR LEU LEU PRO THR ALA ALA ALA GLY LEU LEU SEQRES 2 C 144 LEU LEU ALA ALA GLN PRO ALA MET ALA GLN VAL GLN LEU SEQRES 3 C 144 VAL GLU SER GLY GLY GLY LEU VAL GLN PRO GLY GLY PHE SEQRES 4 C 144 LEU ARG LEU LEU CYS THR ALA SER GLY ASN ILE PHE SER SEQRES 5 C 144 SER ASN THR MET GLY TRP TYR ARG ARG ALA PRO GLY LYS SEQRES 6 C 144 GLN ARG GLU TRP VAL ALA SER ILE SER LYS GLY GLY SER SEQRES 7 C 144 THR ASN TYR ALA ASP SER VAL LYS ASP ARG PHE THR ILE SEQRES 8 C 144 SER ARG SER ILE THR LYS ASN THR VAL TYR LEU GLN MET SEQRES 9 C 144 VAL ASN LEU LYS PRO GLU ASP THR ALA VAL TYR TYR CYS SEQRES 10 C 144 ASN PRO VAL PRO ASP SER ASP ASN TYR ALA SER GLY GLN SEQRES 11 C 144 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 12 C 144 HIS HET CA A 301 1 HET CA A 302 1 HET GOL B 201 6 HET GOL C 201 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CA 2(CA 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *365(H2 O) HELIX 1 AA1 ASP A 227 SER A 229 5 3 HELIX 2 AA2 ASP B 65 LYS B 68 5 4 HELIX 3 AA3 ARG B 90 THR B 94 5 5 HELIX 4 AA4 ASP B 104 SER B 106 5 3 HELIX 5 AA5 ASP B 107 SER B 112 1 6 HELIX 6 AA6 LYS C 86 THR C 90 5 5 SHEET 1 AA1 5 GLY A 39 LYS A 42 0 SHEET 2 AA1 5 LYS A 61 THR A 68 1 O THR A 66 N VAL A 41 SHEET 3 AA1 5 GLN A 126 THR A 133 -1 O MET A 131 N CYS A 63 SHEET 4 AA1 5 ALA A 94 ALA A 99 -1 N GLU A 96 O ARG A 130 SHEET 5 AA1 5 ARG A 107 PHE A 111 -1 O LEU A 108 N VAL A 97 SHEET 1 AA2 4 SER A 45 ALA A 49 0 SHEET 2 AA2 4 GLY A 141 ALA A 150 -1 O LEU A 144 N VAL A 48 SHEET 3 AA2 4 GLN A 73 ASP A 83 -1 N SER A 78 O TRP A 145 SHEET 4 AA2 4 LEU A 120 VAL A 121 -1 O LEU A 120 N LEU A 77 SHEET 1 AA3 5 GLY A 161 LEU A 163 0 SHEET 2 AA3 5 ILE A 184 ILE A 191 1 O SER A 187 N GLY A 161 SHEET 3 AA3 5 GLU A 250 SER A 257 -1 O SER A 257 N ILE A 184 SHEET 4 AA3 5 SER A 217 ASN A 222 -1 N SER A 219 O GLN A 254 SHEET 5 AA3 5 ARG A 231 PHE A 235 -1 O LEU A 232 N VAL A 220 SHEET 1 AA4 4 GLN A 167 THR A 171 0 SHEET 2 AA4 4 GLY A 265 LEU A 273 -1 O ALA A 268 N LEU A 170 SHEET 3 AA4 4 VAL A 197 ASP A 206 -1 N THR A 201 O SER A 269 SHEET 4 AA4 4 ILE A 244 SER A 245 -1 O ILE A 244 N LEU A 200 SHEET 1 AA5 4 GLN B 5 SER B 9 0 SHEET 2 AA5 4 LEU B 20 SER B 27 -1 O SER B 27 N GLN B 5 SHEET 3 AA5 4 THR B 81 MET B 86 -1 O MET B 86 N LEU B 20 SHEET 4 AA5 4 PHE B 71 ARG B 75 -1 N THR B 72 O GLN B 85 SHEET 1 AA6 6 PHE B 13 VAL B 14 0 SHEET 2 AA6 6 THR B 118 VAL B 122 1 O THR B 121 N VAL B 14 SHEET 3 AA6 6 ALA B 95 GLU B 102 -1 N TYR B 97 O THR B 118 SHEET 4 AA6 6 ASN B 35 GLN B 41 -1 N PHE B 39 O TYR B 98 SHEET 5 AA6 6 GLU B 48 SER B 54 -1 O SER B 51 N TRP B 38 SHEET 6 AA6 6 GLN B 60 TYR B 63 -1 O GLN B 60 N SER B 54 SHEET 1 AA7 5 PHE C 67 SER C 72 0 SHEET 2 AA7 5 THR C 77 MET C 82 -1 O TYR C 79 N SER C 70 SHEET 3 AA7 5 LEU C 18 SER C 25 -1 N LEU C 18 O MET C 82 SHEET 4 AA7 5 VAL C 2 SER C 7 -1 N VAL C 5 O THR C 23 SHEET 5 AA7 5 TYR C 104 ALA C 105 1 O ALA C 105 N VAL C 2 SHEET 1 AA8 6 GLY C 10 VAL C 12 0 SHEET 2 AA8 6 THR C 110 VAL C 114 1 O THR C 113 N VAL C 12 SHEET 3 AA8 6 ALA C 91 VAL C 98 -1 N ALA C 91 O VAL C 112 SHEET 4 AA8 6 THR C 33 ARG C 39 -1 N TYR C 37 O TYR C 94 SHEET 5 AA8 6 GLU C 46 SER C 52 -1 O GLU C 46 N ARG C 38 SHEET 6 AA8 6 THR C 57 TYR C 59 -1 O ASN C 58 N SER C 50 SSBOND 1 CYS A 37 CYS A 63 1555 1555 2.11 SSBOND 2 CYS A 90 CYS A 112 1555 1555 2.21 SSBOND 3 CYS A 159 CYS A 186 1555 1555 2.11 SSBOND 4 CYS A 213 CYS A 236 1555 1555 2.09 SSBOND 5 CYS B 24 CYS B 99 1555 1555 2.15 SSBOND 6 CYS C 22 CYS C 95 1555 1555 2.05 LINK OE1 GLU A 85 CA CA A 301 1555 1555 2.12 LINK OD1 ASP A 93 CA CA A 301 1555 1555 2.72 LINK OD2 ASP A 93 CA CA A 301 1555 1555 2.48 LINK OD1 ASP A 134 CA CA A 301 1555 1555 2.20 LINK O GLY A 136 CA CA A 301 1555 1555 2.45 LINK O THR A 137 CA CA A 301 1555 1555 2.15 LINK OE1 GLU A 208 CA CA A 302 1555 1555 2.25 LINK OD1 ASP A 216 CA CA A 302 1555 1555 2.31 LINK OD2 ASP A 216 CA CA A 302 1555 1555 2.51 LINK OD1 ASP A 258 CA CA A 302 1555 1555 2.39 LINK O SER A 260 CA CA A 302 1555 1555 2.21 LINK O VAL A 261 CA CA A 302 1555 1555 2.22 LINK CA CA A 301 O HOH A 488 1555 1555 2.34 LINK CA CA A 302 O HOH A 409 1555 1555 2.30 CISPEP 1 PHE A 53 PRO A 54 0 7.90 CISPEP 2 TRP A 175 PRO A 176 0 -3.87 CISPEP 3 VAL C 98 PRO C 99 0 -8.62 CRYST1 54.830 95.945 110.771 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009028 0.00000