HEADER RNA BINDING PROTEIN 12-MAR-24 9EN7 TITLE HRP48 RRM1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 27C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HRB27-C,HRP48.1,HNRNP 48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: HRB27C, HRP48, RBP7, CG10377; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3) KEYWDS RNA-RECOGNITION MOTIF, RRM, TRANSLATIONAL CONTROL, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LOMOSCHITZ,J.HENNIG,B.MURCIANO,J.MEYER REVDAT 2 20-NOV-24 9EN7 1 JRNL REVDAT 1 13-NOV-24 9EN7 0 JRNL AUTH A.LOMOSCHITZ,J.MEYER,T.GUITART,M.KREPL,K.LAPOUGE,C.HAYN, JRNL AUTH 2 K.SCHWEIMER,B.SIMON,J.SPONER,F.GEBAUER,J.HENNIG JRNL TITL THE DROSOPHILA RNA BINDING PROTEIN HRP48 BINDS A SPECIFIC JRNL TITL 2 RNA SEQUENCE OF THE MSL-2 MRNA 3' UTR TO REGULATE JRNL TITL 3 TRANSLATION. JRNL REF BIOPHYS.CHEM. V. 316 07346 2024 JRNL REFN ISSN 0301-4622 JRNL PMID 39504588 JRNL DOI 10.1016/J.BPC.2024.107346 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 29742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.720 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8200 - 2.8600 1.00 2348 169 0.1598 0.1641 REMARK 3 2 2.8600 - 2.2700 1.00 2240 162 0.1669 0.1697 REMARK 3 3 2.2700 - 1.9800 1.00 2222 160 0.1522 0.1707 REMARK 3 4 1.9800 - 1.8000 1.00 2202 158 0.1478 0.1703 REMARK 3 5 1.8000 - 1.6700 1.00 2180 157 0.1629 0.1705 REMARK 3 6 1.6700 - 1.5700 1.00 2187 159 0.1507 0.1506 REMARK 3 7 1.5700 - 1.5000 1.00 2172 156 0.1474 0.1562 REMARK 3 8 1.5000 - 1.4300 1.00 2164 157 0.1603 0.1857 REMARK 3 9 1.4300 - 1.3800 1.00 2160 155 0.1690 0.1892 REMARK 3 10 1.3800 - 1.3300 1.00 2160 155 0.2091 0.1864 REMARK 3 11 1.3300 - 1.2900 0.99 2161 157 0.2045 0.2194 REMARK 3 12 1.2900 - 1.2500 0.93 1996 144 0.2244 0.2044 REMARK 3 13 1.2500 - 1.2200 0.58 1256 90 0.2111 0.2257 REMARK 3 14 1.2200 - 1.1900 0.14 294 21 0.2260 0.1749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.092 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 696 REMARK 3 ANGLE : 0.867 939 REMARK 3 CHIRALITY : 0.091 98 REMARK 3 PLANARITY : 0.009 126 REMARK 3 DIHEDRAL : 12.989 259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292128961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 31.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.06499 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 26.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 1.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K2SO4 AND 20% (W/V) PEG 3350, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 302K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.17200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.51300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.74800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.51300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.17200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.74800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 DBREF 9EN7 A 3 90 UNP P48809 RB27C_DROME 1 88 SEQADV 9EN7 GLY A 1 UNP P48809 EXPRESSION TAG SEQADV 9EN7 ALA A 2 UNP P48809 EXPRESSION TAG SEQRES 1 A 90 GLY ALA MET GLU GLU ASP GLU ARG GLY LYS LEU PHE VAL SEQRES 2 A 90 GLY GLY LEU SER TRP GLU THR THR GLN GLU ASN LEU SER SEQRES 3 A 90 ARG TYR PHE CYS ARG PHE GLY ASP ILE ILE ASP CYS VAL SEQRES 4 A 90 VAL MET LYS ASN ASN GLU SER GLY ARG SER ARG GLY PHE SEQRES 5 A 90 GLY PHE VAL THR PHE ALA ASP PRO THR ASN VAL ASN HIS SEQRES 6 A 90 VAL LEU GLN ASN GLY PRO HIS THR LEU ASP GLY ARG THR SEQRES 7 A 90 ILE ASP PRO LYS PRO CYS ASN PRO ARG THR LEU GLN HET GOL A 101 14 HET GOL A 102 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *121(H2 O) HELIX 1 AA1 THR A 21 CYS A 30 1 10 HELIX 2 AA2 ARG A 31 GLY A 33 5 3 HELIX 3 AA3 THR A 61 ASN A 69 1 9 SHEET 1 AA1 5 ILE A 35 LYS A 42 0 SHEET 2 AA1 5 SER A 49 PHE A 57 -1 O ARG A 50 N MET A 41 SHEET 3 AA1 5 LYS A 10 GLY A 14 -1 N LEU A 11 O VAL A 55 SHEET 4 AA1 5 ARG A 77 PRO A 83 -1 O LYS A 82 N PHE A 12 SHEET 5 AA1 5 HIS A 72 LEU A 74 -1 N LEU A 74 O ARG A 77 CISPEP 1 GLY A 70 PRO A 71 0 -1.45 CRYST1 38.344 45.496 57.026 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017536 0.00000 CONECT 672 673 674 678 679 CONECT 673 672 680 CONECT 674 672 675 676 681 CONECT 675 674 682 CONECT 676 674 677 683 684 CONECT 677 676 685 CONECT 678 672 CONECT 679 672 CONECT 680 673 CONECT 681 674 CONECT 682 675 CONECT 683 676 CONECT 684 676 CONECT 685 677 CONECT 686 687 688 692 693 CONECT 687 686 694 CONECT 688 686 689 690 695 CONECT 689 688 696 CONECT 690 688 691 697 698 CONECT 691 690 699 CONECT 692 686 CONECT 693 686 CONECT 694 687 CONECT 695 688 CONECT 696 689 CONECT 697 690 CONECT 698 690 CONECT 699 691 MASTER 213 0 2 3 5 0 0 6 797 1 28 7 END