HEADER HYDROLASE 13-MAR-24 9ENT TITLE SSX STRUCTURE OF AUTOTAXIN IN CRYOGENIC CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 6 EC: 3.1.4.39; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ENPP2, ATX, NPPS2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS AUTOTAXIN, LPA, SSX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.EYMERY,A.A.MCCARTHY,N.FOOS,S.BASU REVDAT 1 31-JUL-24 9ENT 0 JRNL AUTH N.FOOS,J.B.FLORIAL,M.EYMERY,J.SINOIR,F.FELISAZ,M.OSCARSSON, JRNL AUTH 2 A.BETEVA,M.W.BOWLER,D.NURIZZO,G.PAPP,M.SOLER-LOPEZ,M.NANAO, JRNL AUTH 3 S.BASU,A.A.MCCARTHY JRNL TITL IN SITU SERIAL CRYSTALLOGRAPHY FACILITATES 96-WELL PLATE JRNL TITL 2 STRUCTURAL ANALYSIS AT LOW SYMMETRY. JRNL REF IUCRJ 2024 JRNL REFN ESSN 2052-2525 JRNL PMID 39008358 JRNL DOI 10.1107/S2052252524005785 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 39724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5100 - 5.3000 0.99 2695 141 0.1876 0.2060 REMARK 3 2 5.3000 - 4.2100 0.99 2703 143 0.1519 0.2041 REMARK 3 3 4.2100 - 3.6800 0.99 2697 142 0.1563 0.1796 REMARK 3 4 3.6800 - 3.3400 0.99 2668 140 0.1668 0.1964 REMARK 3 5 3.3400 - 3.1000 0.99 2698 142 0.1831 0.2560 REMARK 3 6 3.1000 - 2.9200 0.99 2708 143 0.2000 0.2483 REMARK 3 7 2.9200 - 2.7700 0.99 2717 143 0.2175 0.2803 REMARK 3 8 2.7700 - 2.6500 0.99 2676 141 0.2202 0.2772 REMARK 3 9 2.6500 - 2.5500 0.99 2653 139 0.2287 0.2717 REMARK 3 10 2.5500 - 2.4600 0.99 2725 144 0.2427 0.2755 REMARK 3 11 2.4600 - 2.3800 0.99 2721 143 0.2572 0.3305 REMARK 3 12 2.3800 - 2.3200 0.99 2672 140 0.2829 0.3346 REMARK 3 13 2.3200 - 2.2600 0.99 2711 143 0.2922 0.3039 REMARK 3 14 2.2600 - 2.2000 0.99 2694 142 0.3097 0.3550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6691 REMARK 3 ANGLE : 0.643 9099 REMARK 3 CHIRALITY : 0.043 961 REMARK 3 PLANARITY : 0.007 1190 REMARK 3 DIHEDRAL : 15.646 2528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ENT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL V.0.10.1 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL V.0.10.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 270477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.770 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% (M/V) PEG3350, 0.1-0.3 M NH4I REMARK 280 AND 0.1-0.3 M NASCN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 CYS A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 PHE A 10 REMARK 465 GLN A 11 REMARK 465 VAL A 12 REMARK 465 ILE A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 THR A 17 REMARK 465 PHE A 18 REMARK 465 ALA A 19 REMARK 465 ILE A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 ASN A 23 REMARK 465 ILE A 24 REMARK 465 CYS A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 PHE A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 ARG A 32 REMARK 465 ILE A 33 REMARK 465 LYS A 34 REMARK 465 ARG A 35 REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 TRP A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 VAL A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 TRP A 51 REMARK 465 THR A 52 REMARK 465 ASN A 53 REMARK 465 THR A 54 REMARK 465 SER A 55 REMARK 465 ASN A 398 REMARK 465 ASN A 399 REMARK 465 SER A 400 REMARK 465 VAL A 572 REMARK 465 GLU A 573 REMARK 465 PRO A 574 REMARK 465 LYS A 575 REMARK 465 ASN A 576 REMARK 465 LYS A 577 REMARK 465 LEU A 578 REMARK 465 GLU A 579 REMARK 465 GLU A 580 REMARK 465 LEU A 581 REMARK 465 ASN A 582 REMARK 465 LYS A 583 REMARK 465 ARG A 584 REMARK 465 LEU A 585 REMARK 465 HIS A 586 REMARK 465 THR A 587 REMARK 465 SER A 860 REMARK 465 GLU A 861 REMARK 465 ILE A 862 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 PRO A 464 CG CD REMARK 470 SER A 465 OG REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 LYS A 571 CG CD CE NZ REMARK 470 ASN A 806 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 315 ZN ZN A 903 1.55 REMARK 500 O GLY A 678 O HOH A 1001 2.00 REMARK 500 O PRO A 550 O HOH A 1002 2.04 REMARK 500 OD1 ASP A 380 O HOH A 1003 2.07 REMARK 500 O LYS A 456 O HOH A 1004 2.09 REMARK 500 OE2 GLU A 618 O HOH A 1005 2.13 REMARK 500 O VAL A 702 O HOH A 1001 2.13 REMARK 500 O HOH A 1165 O HOH A 1272 2.16 REMARK 500 OE2 GLU A 121 O HOH A 1006 2.17 REMARK 500 OE1 GLU A 817 O HOH A 1007 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 468 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 -162.89 -104.23 REMARK 500 SER A 84 15.57 -143.86 REMARK 500 LEU A 94 49.48 -103.16 REMARK 500 CYS A 137 -61.33 -90.45 REMARK 500 GLU A 155 78.90 -111.97 REMARK 500 SER A 182 -59.65 64.76 REMARK 500 GLU A 323 1.23 -69.86 REMARK 500 ARG A 368 74.82 -106.40 REMARK 500 ALA A 435 -35.91 -160.56 REMARK 500 CYS A 468 106.98 -163.22 REMARK 500 CYS A 468 79.97 174.10 REMARK 500 ASP A 570 17.18 -163.65 REMARK 500 SER A 676 -152.77 -112.09 REMARK 500 ASN A 801 41.43 -105.54 REMARK 500 TRP A 814 -21.21 -160.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1442 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1443 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A1446 DISTANCE = 7.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 904 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 THR A 209 OG1 131.5 REMARK 620 3 ASP A 358 OD2 95.6 127.9 REMARK 620 4 HIS A 359 NE2 96.6 104.3 87.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 311 OD1 REMARK 620 2 ASP A 311 OD2 59.2 REMARK 620 3 HIS A 315 ND1 100.2 80.9 REMARK 620 4 HIS A 474 NE2 86.7 141.3 126.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 921 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 669 O REMARK 620 2 ASP A 672 O 63.8 REMARK 620 3 MET A 675 O 84.1 73.7 REMARK 620 4 HOH A1312 O 68.2 130.1 88.6 REMARK 620 5 HOH A1348 O 77.2 93.8 160.8 88.6 REMARK 620 6 HOH A1379 O 151.5 138.9 87.8 84.4 110.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 739 OD1 REMARK 620 2 ASN A 741 OD1 79.4 REMARK 620 3 ASP A 743 OD1 71.6 76.1 REMARK 620 4 LEU A 745 O 80.1 157.9 89.5 REMARK 620 5 ASP A 747 OD1 98.9 88.8 163.3 102.7 REMARK 620 6 HOH A1291 O 158.8 97.0 87.2 99.0 101.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 922 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 801 O REMARK 620 2 SER A 804 O 74.6 REMARK 620 3 SER A 807 OG 86.9 82.3 REMARK 620 4 HOH A1146 O 91.6 84.1 166.3 REMARK 620 5 HOH A1321 O 75.0 148.3 87.2 105.6 REMARK 620 6 HOH A1378 O 177.5 102.9 92.7 88.2 107.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 923 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1366 O REMARK 620 2 HOH A1398 O 89.4 REMARK 620 N 1 DBREF 9ENT A 1 862 UNP Q64610 ENPP2_RAT 1 887 SEQADV 9ENT A UNP Q64610 GLU 592 DELETION SEQADV 9ENT A UNP Q64610 ALA 593 DELETION SEQADV 9ENT A UNP Q64610 GLU 594 DELETION SEQADV 9ENT A UNP Q64610 THR 595 DELETION SEQADV 9ENT A UNP Q64610 GLY 596 DELETION SEQADV 9ENT A UNP Q64610 LYS 597 DELETION SEQADV 9ENT A UNP Q64610 PHE 598 DELETION SEQADV 9ENT A UNP Q64610 ARG 599 DELETION SEQADV 9ENT A UNP Q64610 GLY 600 DELETION SEQADV 9ENT A UNP Q64610 SER 601 DELETION SEQADV 9ENT A UNP Q64610 LYS 602 DELETION SEQADV 9ENT A UNP Q64610 HIS 603 DELETION SEQADV 9ENT A UNP Q64610 GLU 604 DELETION SEQADV 9ENT A UNP Q64610 ASN 605 DELETION SEQADV 9ENT A UNP Q64610 LYS 606 DELETION SEQADV 9ENT A UNP Q64610 LYS 607 DELETION SEQADV 9ENT A UNP Q64610 ASN 608 DELETION SEQADV 9ENT A UNP Q64610 LEU 609 DELETION SEQADV 9ENT A UNP Q64610 ASN 610 DELETION SEQADV 9ENT A UNP Q64610 GLY 611 DELETION SEQADV 9ENT A UNP Q64610 SER 612 DELETION SEQADV 9ENT A UNP Q64610 VAL 613 DELETION SEQADV 9ENT A UNP Q64610 GLU 614 DELETION SEQADV 9ENT A UNP Q64610 PRO 615 DELETION SEQADV 9ENT A UNP Q64610 ARG 616 DELETION SEQRES 1 A 862 MET ALA ARG GLN GLY CYS LEU GLY SER PHE GLN VAL ILE SEQRES 2 A 862 SER LEU PHE THR PHE ALA ILE SER VAL ASN ILE CYS LEU SEQRES 3 A 862 GLY PHE THR ALA SER ARG ILE LYS ARG ALA GLU TRP ASP SEQRES 4 A 862 GLU GLY PRO PRO THR VAL LEU SER ASP SER PRO TRP THR SEQRES 5 A 862 ASN THR SER GLY SER CYS LYS GLY ARG CYS PHE GLU LEU SEQRES 6 A 862 GLN GLU VAL GLY PRO PRO ASP CYS ARG CYS ASP ASN LEU SEQRES 7 A 862 CYS LYS SER TYR SER SER CYS CYS HIS ASP PHE ASP GLU SEQRES 8 A 862 LEU CYS LEU LYS THR ALA ARG GLY TRP GLU CYS THR LYS SEQRES 9 A 862 ASP ARG CYS GLY GLU VAL ARG ASN GLU GLU ASN ALA CYS SEQRES 10 A 862 HIS CYS SER GLU ASP CYS LEU SER ARG GLY ASP CYS CYS SEQRES 11 A 862 THR ASN TYR GLN VAL VAL CYS LYS GLY GLU SER HIS TRP SEQRES 12 A 862 VAL ASP ASP ASP CYS GLU GLU ILE LYS VAL PRO GLU CYS SEQRES 13 A 862 PRO ALA GLY PHE VAL ARG PRO PRO LEU ILE ILE PHE SER SEQRES 14 A 862 VAL ASP GLY PHE ARG ALA SER TYR MET LYS LYS GLY SER SEQRES 15 A 862 LYS VAL MET PRO ASN ILE GLU LYS LEU ARG SER CYS GLY SEQRES 16 A 862 THR HIS ALA PRO TYR MET ARG PRO VAL TYR PRO THR LYS SEQRES 17 A 862 THR PHE PRO ASN LEU TYR THR LEU ALA THR GLY LEU TYR SEQRES 18 A 862 PRO GLU SER HIS GLY ILE VAL GLY ASN SER MET TYR ASP SEQRES 19 A 862 PRO VAL PHE ASP ALA SER PHE HIS LEU ARG GLY ARG GLU SEQRES 20 A 862 LYS PHE ASN HIS ARG TRP TRP GLY GLY GLN PRO LEU TRP SEQRES 21 A 862 ILE THR ALA THR LYS GLN GLY VAL ARG ALA GLY THR PHE SEQRES 22 A 862 PHE TRP SER VAL SER ILE PRO HIS GLU ARG ARG ILE LEU SEQRES 23 A 862 THR ILE LEU GLN TRP LEU SER LEU PRO ASP ASN GLU ARG SEQRES 24 A 862 PRO SER VAL TYR ALA PHE TYR SER GLU GLN PRO ASP PHE SEQRES 25 A 862 SER GLY HIS LYS TYR GLY PRO PHE GLY PRO GLU MET THR SEQRES 26 A 862 ASN PRO LEU ARG GLU ILE ASP LYS THR VAL GLY GLN LEU SEQRES 27 A 862 MET ASP GLY LEU LYS GLN LEU ARG LEU HIS ARG CYS VAL SEQRES 28 A 862 ASN VAL ILE PHE VAL GLY ASP HIS GLY MET GLU ASP VAL SEQRES 29 A 862 THR CYS ASP ARG THR GLU PHE LEU SER ASN TYR LEU THR SEQRES 30 A 862 ASN VAL ASP ASP ILE THR LEU VAL PRO GLY THR LEU GLY SEQRES 31 A 862 ARG ILE ARG ALA LYS SER ILE ASN ASN SER LYS TYR ASP SEQRES 32 A 862 PRO LYS THR ILE ILE ALA ASN LEU THR CYS LYS LYS PRO SEQRES 33 A 862 ASP GLN HIS PHE LYS PRO TYR MET LYS GLN HIS LEU PRO SEQRES 34 A 862 LYS ARG LEU HIS TYR ALA ASN ASN ARG ARG ILE GLU ASP SEQRES 35 A 862 ILE HIS LEU LEU VAL ASP ARG ARG TRP HIS VAL ALA ARG SEQRES 36 A 862 LYS PRO LEU ASP VAL TYR LYS LYS PRO SER GLY LYS CYS SEQRES 37 A 862 PHE PHE GLN GLY ASP HIS GLY PHE ASP ASN LYS VAL ASN SEQRES 38 A 862 SER MET GLN THR VAL PHE VAL GLY TYR GLY PRO THR PHE SEQRES 39 A 862 LYS TYR ARG THR LYS VAL PRO PRO PHE GLU ASN ILE GLU SEQRES 40 A 862 LEU TYR ASN VAL MET CYS ASP LEU LEU GLY LEU LYS PRO SEQRES 41 A 862 ALA PRO ASN ASN GLY THR HIS GLY SER LEU ASN HIS LEU SEQRES 42 A 862 LEU ARG THR ASN THR PHE ARG PRO THR MET PRO ASP GLU SEQRES 43 A 862 VAL SER ARG PRO ASN TYR PRO GLY ILE MET TYR LEU GLN SEQRES 44 A 862 SER GLU PHE ASP LEU GLY CYS THR CYS ASP ASP LYS VAL SEQRES 45 A 862 GLU PRO LYS ASN LYS LEU GLU GLU LEU ASN LYS ARG LEU SEQRES 46 A 862 HIS THR LYS GLY SER THR LYS GLU ARG HIS LEU LEU TYR SEQRES 47 A 862 GLY ARG PRO ALA VAL LEU TYR ARG THR SER TYR ASP ILE SEQRES 48 A 862 LEU TYR HIS THR ASP PHE GLU SER GLY TYR SER GLU ILE SEQRES 49 A 862 PHE LEU MET PRO LEU TRP THR SER TYR THR ILE SER LYS SEQRES 50 A 862 GLN ALA GLU VAL SER SER ILE PRO GLU HIS LEU THR ASN SEQRES 51 A 862 CYS VAL ARG PRO ASP VAL ARG VAL SER PRO GLY PHE SER SEQRES 52 A 862 GLN ASN CYS LEU ALA TYR LYS ASN ASP LYS GLN MET SER SEQRES 53 A 862 TYR GLY PHE LEU PHE PRO PRO TYR LEU SER SER SER PRO SEQRES 54 A 862 GLU ALA LYS TYR ASP ALA PHE LEU VAL THR ASN MET VAL SEQRES 55 A 862 PRO MET TYR PRO ALA PHE LYS ARG VAL TRP ALA TYR PHE SEQRES 56 A 862 GLN ARG VAL LEU VAL LYS LYS TYR ALA SER GLU ARG ASN SEQRES 57 A 862 GLY VAL ASN VAL ILE SER GLY PRO ILE PHE ASP TYR ASN SEQRES 58 A 862 TYR ASP GLY LEU ARG ASP THR GLU ASP GLU ILE LYS GLN SEQRES 59 A 862 TYR VAL GLU GLY SER SER ILE PRO VAL PRO THR HIS TYR SEQRES 60 A 862 TYR SER ILE ILE THR SER CYS LEU ASP PHE THR GLN PRO SEQRES 61 A 862 ALA ASP LYS CYS ASP GLY PRO LEU SER VAL SER SER PHE SEQRES 62 A 862 ILE LEU PRO HIS ARG PRO ASP ASN ASP GLU SER CYS ASN SEQRES 63 A 862 SER SER GLU ASP GLU SER LYS TRP VAL GLU GLU LEU MET SEQRES 64 A 862 LYS MET HIS THR ALA ARG VAL ARG ASP ILE GLU HIS LEU SEQRES 65 A 862 THR GLY LEU ASP PHE TYR ARG LYS THR SER ARG SER TYR SEQRES 66 A 862 SER GLU ILE LEU THR LEU LYS THR TYR LEU HIS THR TYR SEQRES 67 A 862 GLU SER GLU ILE HET NAG B 1 14 HET NAG B 2 14 HET NAG B 3 14 HET 5JK A 901 29 HET SCN A 902 3 HET ZN A 903 1 HET ZN A 904 1 HET CA A 905 1 HET IOD A 906 1 HET IOD A 907 1 HET IOD A 908 1 HET IOD A 909 1 HET IOD A 910 1 HET IOD A 911 1 HET IOD A 912 1 HET IOD A 913 1 HET IOD A 914 1 HET IOD A 915 1 HET IOD A 916 1 HET IOD A 917 1 HET IOD A 918 1 HET IOD A 919 1 HET IOD A 920 1 HET NA A 921 1 HET NA A 922 1 HET NA A 923 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 5JK 7ALPHA-HYDROXYCHOLESTEROL HETNAM SCN THIOCYANATE ION HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 5JK (3BETA,7ALPHA,9BETA,14BETA)-CHOLEST-5-ENE-3,7-DIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 5JK C27 H46 O2 FORMUL 4 SCN C N S 1- FORMUL 5 ZN 2(ZN 2+) FORMUL 7 CA CA 2+ FORMUL 8 IOD 15(I 1-) FORMUL 23 NA 3(NA 1+) FORMUL 26 HOH *449(H2 O) HELIX 1 AA1 ASP A 88 CYS A 93 1 6 HELIX 2 AA2 THR A 103 CYS A 107 5 5 HELIX 3 AA3 ASP A 122 GLY A 127 1 6 HELIX 4 AA4 ASN A 132 CYS A 137 1 6 HELIX 5 AA5 ARG A 174 LYS A 180 5 7 HELIX 6 AA6 MET A 185 GLY A 195 1 11 HELIX 7 AA7 LYS A 208 GLY A 219 1 12 HELIX 8 AA8 TYR A 221 GLY A 226 1 6 HELIX 9 AA9 ARG A 246 TRP A 254 5 9 HELIX 10 AB1 PRO A 258 GLN A 266 1 9 HELIX 11 AB2 PRO A 280 LEU A 292 1 13 HELIX 12 AB3 ASP A 311 GLY A 318 1 8 HELIX 13 AB4 GLY A 321 GLU A 323 5 3 HELIX 14 AB5 MET A 324 LEU A 345 1 22 HELIX 15 AB6 SER A 373 TYR A 375 5 3 HELIX 16 AB7 ASN A 378 ASP A 380 5 3 HELIX 17 AB8 ASP A 403 ASN A 410 1 8 HELIX 18 AB9 GLN A 426 LEU A 428 5 3 HELIX 19 AC1 PRO A 429 HIS A 433 5 5 HELIX 20 AC2 VAL A 480 GLN A 484 5 5 HELIX 21 AC3 GLU A 507 LEU A 516 1 10 HELIX 22 AC4 LEU A 530 LEU A 534 5 5 HELIX 23 AC5 LEU A 558 PHE A 562 5 5 HELIX 24 AC6 GLY A 589 LEU A 596 1 8 HELIX 25 AC7 PRO A 645 THR A 649 5 5 HELIX 26 AC8 SER A 659 SER A 663 5 5 HELIX 27 AC9 ASN A 665 ASP A 672 1 8 HELIX 28 AD1 PRO A 682 SER A 686 5 5 HELIX 29 AD2 GLU A 690 THR A 699 5 10 HELIX 30 AD3 TYR A 705 VAL A 718 1 14 HELIX 31 AD4 VAL A 718 ARG A 727 1 10 HELIX 32 AD5 THR A 748 ILE A 752 5 5 HELIX 33 AD6 PRO A 780 CYS A 784 5 5 HELIX 34 AD7 ASP A 810 LYS A 813 5 4 HELIX 35 AD8 TRP A 814 HIS A 822 1 9 HELIX 36 AD9 ARG A 825 GLY A 834 1 10 HELIX 37 AE1 SER A 844 THR A 853 1 10 SHEET 1 AA1 6 VAL A 302 PRO A 310 0 SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N LEU A 165 O TYR A 303 SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA1 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA1 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197 SHEET 1 AA2 6 VAL A 302 PRO A 310 0 SHEET 2 AA2 6 LEU A 165 ASP A 171 1 N LEU A 165 O TYR A 303 SHEET 3 AA2 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA2 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA2 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA2 6 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202 SHEET 1 AA3 2 MET A 232 ASP A 234 0 SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O PHE A 241 N MET A 232 SHEET 1 AA4 2 GLU A 362 ASP A 363 0 SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362 SHEET 1 AA5 2 THR A 369 PHE A 371 0 SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O ALA A 454 N GLU A 370 SHEET 1 AA6 4 ILE A 382 VAL A 385 0 SHEET 2 AA6 4 LEU A 389 ALA A 394 -1 O ARG A 393 N THR A 383 SHEET 3 AA6 4 ILE A 443 VAL A 447 -1 O LEU A 445 N GLY A 390 SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444 SHEET 1 AA7 2 ALA A 602 VAL A 603 0 SHEET 2 AA7 2 LEU A 835 ASP A 836 -1 O ASP A 836 N ALA A 602 SHEET 1 AA8 7 TYR A 609 TYR A 613 0 SHEET 2 AA8 7 GLU A 618 SER A 622 -1 O TYR A 621 N ASP A 610 SHEET 3 AA8 7 MET A 627 ILE A 635 -1 O LEU A 629 N GLY A 620 SHEET 4 AA8 7 VAL A 730 ILE A 737 -1 O VAL A 732 N TYR A 633 SHEET 5 AA8 7 HIS A 766 CYS A 774 -1 O THR A 772 N ASN A 731 SHEET 6 AA8 7 LEU A 788 PRO A 796 -1 O SER A 791 N ILE A 771 SHEET 7 AA8 7 THR A 823 ALA A 824 -1 O ALA A 824 N SER A 792 SHEET 1 AA9 2 SER A 676 PHE A 679 0 SHEET 2 AA9 2 MET A 701 MET A 704 -1 O VAL A 702 N GLY A 678 SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.03 SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.03 SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.03 SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.04 SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.03 SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.03 SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.03 SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.03 SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.03 SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.03 SSBOND 11 CYS A 366 CYS A 468 1555 1555 2.04 SSBOND 12 CYS A 413 CYS A 805 1555 1555 2.03 SSBOND 13 CYS A 566 CYS A 666 1555 1555 2.03 SSBOND 14 CYS A 568 CYS A 651 1555 1555 2.03 SSBOND 15 CYS A 774 CYS A 784 1555 1555 2.03 LINK ND2 ASN A 524 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.49 LINK OD1 ASP A 171 ZN ZN A 904 1555 1555 1.95 LINK OG1 THR A 209 ZN ZN A 904 1555 1555 1.97 LINK OD1 ASP A 311 ZN ZN A 903 1555 1555 2.27 LINK OD2 ASP A 311 ZN ZN A 903 1555 1555 2.17 LINK ND1 HIS A 315 ZN ZN A 903 1555 1555 2.32 LINK OD2 ASP A 358 ZN ZN A 904 1555 1555 2.03 LINK NE2 HIS A 359 ZN ZN A 904 1555 1555 2.30 LINK NE2 HIS A 474 ZN ZN A 903 1555 1555 2.29 LINK O TYR A 669 NA NA A 921 1555 1555 2.81 LINK O ASP A 672 NA NA A 921 1555 1555 2.60 LINK O MET A 675 NA NA A 921 1555 1555 2.49 LINK OD1 ASP A 739 CA CA A 905 1555 1555 2.42 LINK OD1 ASN A 741 CA CA A 905 1555 1555 2.36 LINK OD1 ASP A 743 CA CA A 905 1555 1555 2.42 LINK O LEU A 745 CA CA A 905 1555 1555 2.41 LINK OD1 ASP A 747 CA CA A 905 1555 1555 2.30 LINK O ASN A 801 NA NA A 922 1555 1555 2.54 LINK O SER A 804 NA NA A 922 1555 1555 2.43 LINK OG SER A 807 NA NA A 922 1555 1555 2.47 LINK CA CA A 905 O HOH A1291 1555 1555 2.41 LINK NA NA A 921 O HOH A1312 1555 1555 2.55 LINK NA NA A 921 O HOH A1348 1555 1555 2.91 LINK NA NA A 921 O HOH A1379 1555 1555 2.50 LINK NA NA A 922 O HOH A1146 1555 1555 2.54 LINK NA NA A 922 O HOH A1321 1555 1555 2.46 LINK NA NA A 922 O HOH A1378 1555 1555 2.48 LINK NA NA A 923 O HOH A1366 1555 1555 2.47 LINK NA NA A 923 O HOH A1398 1555 1454 3.04 CISPEP 1 PRO A 70 PRO A 71 0 -1.34 CISPEP 2 TYR A 205 PRO A 206 0 -3.27 CISPEP 3 GLN A 309 PRO A 310 0 3.10 CRYST1 53.510 61.190 65.010 102.57 99.13 93.67 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018688 0.001199 0.003371 0.00000 SCALE2 0.000000 0.016376 0.003891 0.00000 SCALE3 0.000000 0.000000 0.016013 0.00000