HEADER ALLERGEN 18-MAR-24 9EP9 TITLE NMR SOLUTION STRUCTURE OF LIPID TRANSFER PROTEI SOLA L7 FROM TOMATO TITLE 2 SEEDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC LIPID-TRANSFER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 GENE: 101259287; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS LIPID TRANSFER PROTEIN FATTY ACIDS, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.PARRON-BALLESTEROS,L.MANTIN-PEDRAZ,R.G.GORDO,C.MAYORGA,M.VILLABA, AUTHOR 2 E.BATANERO,D.PANTOJA-UCEDA,J.TURNAY REVDAT 1 04-SEP-24 9EP9 0 JRNL AUTH J.PARRON-BALLESTEROS,L.MARTIN-PEDRAZA,R.G.GORDO,C.MAYORGA, JRNL AUTH 2 C.PASTOR-VARGAS,G.A.TITAUX-DELGADO,M.VILLALBA,E.BATANERO, JRNL AUTH 3 D.PANTOJA-UCEDA,J.TURNAY JRNL TITL LONG-CHAIN FATTY ACIDS BLOCK ALLERGIC REACTION AGAINST LIPID JRNL TITL 2 TRANSFER PROTEIN SOLA L 7 FROM TOMATO SEEDS. JRNL REF PROTEIN SCI. V. 33 E5154 2024 JRNL REFN ESSN 1469-896X JRNL PMID 39180496 JRNL DOI 10.1002/PRO.5154 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137053. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NA REMARK 210 PRESSURE : NA ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C; U-100% 15N] REMARK 210 RSOLAL7, 1 % NA DSS, 90% H2O/10% REMARK 210 D2O; 0.7 MM [U-100% 13C; U-100% REMARK 210 15N] RSOLAL7, 1 % NA DSS, 90% REMARK 210 H2O/10% D2O; 0.7 MM [U-100% 13C; REMARK 210 U-100% 15N] RSOLAL7, 1 % NA DSS, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCOI; 3D HNCA; 3D REMARK 210 HNCAI; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D H(CCO)NH; 3D (H)CC(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HC(C)-TOCSY; 3D REMARK 210 H(NCOCA)NH; 3D (H)N(COCA)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, NMRVIEW, REMARK 210 TALOS+, CYANA, PYMOL, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 23 75.90 -117.53 REMARK 500 2 GLU A 23 77.51 -117.61 REMARK 500 2 TYR A 59 77.34 -119.11 REMARK 500 2 SER A 77 87.68 -69.70 REMARK 500 3 PRO A 60 -175.30 -69.56 REMARK 500 3 ASP A 89 15.59 58.39 REMARK 500 4 GLU A 23 69.73 -115.28 REMARK 500 5 GLU A 23 73.66 -118.45 REMARK 500 5 ASP A 89 17.22 59.71 REMARK 500 6 GLU A 23 74.56 -117.51 REMARK 500 6 PRO A 60 -172.99 -69.52 REMARK 500 7 GLU A 23 77.64 -114.59 REMARK 500 7 PRO A 60 -172.52 -68.40 REMARK 500 7 ASP A 89 18.97 57.18 REMARK 500 8 GLU A 23 74.89 -116.26 REMARK 500 8 PRO A 60 -171.63 -69.44 REMARK 500 8 SER A 77 95.91 -68.43 REMARK 500 9 GLU A 23 73.41 -117.56 REMARK 500 9 ASP A 89 15.05 51.35 REMARK 500 10 THR A 19 36.38 -91.25 REMARK 500 10 PRO A 60 -176.15 -69.18 REMARK 500 10 ASN A 61 0.97 -67.96 REMARK 500 11 CYS A 14 22.09 -145.16 REMARK 500 11 GLU A 23 71.31 -118.73 REMARK 500 11 PRO A 60 -175.78 -69.92 REMARK 500 11 ASP A 89 12.78 57.66 REMARK 500 12 GLU A 23 73.07 -119.43 REMARK 500 12 TYR A 59 76.76 -118.68 REMARK 500 12 PRO A 60 -173.75 -69.67 REMARK 500 13 GLU A 23 74.65 -119.63 REMARK 500 13 TYR A 59 76.77 -119.25 REMARK 500 13 PRO A 60 -175.02 -69.39 REMARK 500 13 THR A 79 41.55 -74.64 REMARK 500 14 CYS A 14 21.33 -143.06 REMARK 500 14 PRO A 60 -174.47 -69.80 REMARK 500 14 SER A 77 93.11 -67.67 REMARK 500 15 THR A 19 41.01 -84.29 REMARK 500 15 GLU A 23 77.41 -115.29 REMARK 500 15 PRO A 60 -177.78 -67.58 REMARK 500 15 SER A 77 99.25 -69.59 REMARK 500 15 ASP A 89 19.55 59.85 REMARK 500 16 GLU A 23 77.74 -107.28 REMARK 500 17 CYS A 14 24.99 -145.89 REMARK 500 17 THR A 19 32.10 -82.94 REMARK 500 17 TYR A 59 76.54 -118.20 REMARK 500 17 CYS A 74 118.59 -164.84 REMARK 500 17 THR A 79 33.69 -78.18 REMARK 500 18 GLU A 23 71.86 -111.39 REMARK 500 18 GLN A 40 -68.57 -96.38 REMARK 500 18 PRO A 60 -173.58 -69.91 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34910 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF LIPID TRANSFER PROTEI SOLA L7 FROM TOMATO REMARK 900 SEEDS DBREF1 9EP9 A 1 92 UNP A0A3Q7EJP1_SOLLC DBREF2 9EP9 A A0A3Q7EJP1 24 115 SEQRES 1 A 92 ALA ILE THR CYS GLY GLN VAL ASP ALA ASN LEU ALA PRO SEQRES 2 A 92 CYS VAL PRO PHE LEU THR GLN GLY GLY GLU PRO GLY ALA SEQRES 3 A 92 ALA CYS CYS SER GLY VAL ARG THR LEU ASN GLY ASN THR SEQRES 4 A 92 GLN SER SER ASP ASP ARG ARG THR ALA CYS ASN CYS VAL SEQRES 5 A 92 LYS ALA ALA ALA ASN ARG TYR PRO ASN LEU LYS ASP ASP SEQRES 6 A 92 ALA ALA GLN SER LEU PRO SER LYS CYS GLY ILE SER LEU SEQRES 7 A 92 THR VAL PRO ILE SER ARG THR VAL ASN CYS ASP THR ILE SEQRES 8 A 92 SER HELIX 1 AA1 GLY A 5 ALA A 12 1 8 HELIX 2 AA2 CYS A 14 GLN A 20 1 7 HELIX 3 AA3 CYS A 29 GLY A 37 1 9 HELIX 4 AA4 SER A 42 ARG A 45 5 4 HELIX 5 AA5 ARG A 46 LYS A 53 1 8 HELIX 6 AA6 ALA A 54 ARG A 58 5 5 HELIX 7 AA7 PRO A 60 LEU A 62 5 3 HELIX 8 AA8 LYS A 63 CYS A 74 1 12 SSBOND 1 CYS A 4 CYS A 51 1555 1555 2.04 SSBOND 2 CYS A 14 CYS A 28 1555 1555 2.04 SSBOND 3 CYS A 29 CYS A 74 1555 1555 2.04 SSBOND 4 CYS A 49 CYS A 88 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1