HEADER VIRUS LIKE PARTICLE 18-MAR-24 9EPF TITLE HUMAN PICOBIRNAVIRUS CP VLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN PRECURSOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEGMENT-1, ORF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS PICOBIRNAVIRUS, CRYOEM, ASSEMBLY, VLP, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR M.J.RODRIGUEZ-ESPINOSA,G.NOVOA,J.M.MARTINEZ-ROMERO,P.J.DE PABLO, AUTHOR 2 J.R.CASTON REVDAT 2 09-JUL-25 9EPF 1 REMARK REVDAT 1 26-MAR-25 9EPF 0 JRNL AUTH M.J.RODRIGUEZ-ESPINOSA,G.NOVOA,J.M.MARTINEZ-ROMERO, JRNL AUTH 2 P.J.DE PABLO,J.R.CASTON JRNL TITL HUMAN PICOBIRNAVIRUS CP VLP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.540 REMARK 3 NUMBER OF PARTICLES : 80582 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9EPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137002. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : 3D ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN PICOBIRNAVIRUS VLP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS TALOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2950.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 120-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 120-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.14_B42094. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.499178 -0.809381 0.309392 -0.59480 REMARK 350 BIOMT2 2 0.809982 0.309017 -0.498436 -0.98426 REMARK 350 BIOMT3 2 0.307817 0.499409 0.809839 0.36747 REMARK 350 BIOMT1 3 -0.311170 -0.499625 0.808423 0.01862 REMARK 350 BIOMT2 3 0.501196 -0.809016 -0.307076 -1.95335 REMARK 350 BIOMT3 3 0.807450 0.309626 0.502151 -0.00957 REMARK 350 BIOMT1 4 -0.311170 0.501196 0.807450 0.99253 REMARK 350 BIOMT2 4 -0.499625 -0.809016 0.309626 -1.56802 REMARK 350 BIOMT3 4 0.808423 -0.307076 0.502151 -0.61007 REMARK 350 BIOMT1 5 0.499178 0.809982 0.307817 0.98103 REMARK 350 BIOMT2 5 -0.809382 0.309017 0.499409 -0.36079 REMARK 350 BIOMT3 5 0.309392 -0.498436 0.809839 -0.60415 REMARK 350 BIOMT1 6 -0.811189 0.307577 0.497361 -0.25957 REMARK 350 BIOMT2 6 0.307577 -0.498949 0.810213 0.45086 REMARK 350 BIOMT3 6 0.497361 0.810213 0.310139 -0.18028 REMARK 350 BIOMT1 7 -0.002699 0.999995 -0.001500 0.10296 REMARK 350 BIOMT2 7 -0.001207 0.001497 0.999998 1.05674 REMARK 350 BIOMT3 7 0.999996 0.002701 0.001203 -1.15960 REMARK 350 BIOMT1 8 0.808169 0.310452 -0.500483 -0.88024 REMARK 350 BIOMT2 8 0.308427 0.500848 0.808718 1.42345 REMARK 350 BIOMT3 8 0.501734 -0.807943 0.309018 -1.75662 REMARK 350 BIOMT1 9 0.500823 -0.808128 -0.310010 -1.85042 REMARK 350 BIOMT2 9 0.808574 0.309017 0.500715 1.04422 REMARK 350 BIOMT3 9 -0.308844 -0.501436 0.808194 -1.14627 REMARK 350 BIOMT1 10 -0.499995 -0.809904 0.306692 -1.46682 REMARK 350 BIOMT2 10 0.808049 -0.308891 0.501640 0.44312 REMARK 350 BIOMT3 10 -0.311546 0.498640 0.808887 -0.17204 REMARK 350 BIOMT1 11 -0.498606 -0.809418 0.310217 -1.45798 REMARK 350 BIOMT2 11 -0.809418 0.306672 -0.500794 -2.39494 REMARK 350 BIOMT3 11 0.310217 -0.500794 -0.808066 -3.89238 REMARK 350 BIOMT1 12 -0.809017 0.308363 0.500404 -0.25074 REMARK 350 BIOMT2 12 -0.309798 0.499794 -0.808846 -2.39937 REMARK 350 BIOMT3 12 -0.499517 -0.809394 -0.308811 -3.88093 REMARK 350 BIOMT1 13 -0.000041 0.999999 0.001244 0.11084 REMARK 350 BIOMT2 13 0.001203 0.001244 -0.999999 -3.00425 REMARK 350 BIOMT3 13 -0.999999 -0.000040 -0.001203 -2.90065 REMARK 350 BIOMT1 14 0.810343 0.309672 -0.497440 -0.87294 REMARK 350 BIOMT2 14 -0.306208 -0.499998 -0.810086 -3.37367 REMARK 350 BIOMT3 14 -0.499580 0.808768 -0.310346 -2.30625 REMARK 350 BIOMT1 15 0.502213 -0.808609 -0.306485 -1.84252 REMARK 350 BIOMT2 15 -0.807200 -0.311233 -0.501560 -2.99709 REMARK 350 BIOMT3 15 0.310178 0.499285 -0.809014 -2.91918 REMARK 350 BIOMT1 16 0.309795 0.501841 -0.807578 -1.74942 REMARK 350 BIOMT2 16 0.501841 -0.807723 -0.309419 -1.95629 REMARK 350 BIOMT3 16 -0.807578 -0.309419 -0.502073 -4.05302 REMARK 350 BIOMT1 17 0.312538 -0.498977 -0.808296 -2.72439 REMARK 350 BIOMT2 17 -0.498977 -0.810308 0.307283 -1.57348 REMARK 350 BIOMT3 17 -0.808296 0.307283 -0.502230 -3.45262 REMARK 350 BIOMT1 18 -0.496957 -0.810826 -0.309184 -2.71619 REMARK 350 BIOMT2 18 -0.810826 0.306924 0.498357 -0.36622 REMARK 350 BIOMT3 18 -0.309184 0.498357 -0.809966 -3.45884 REMARK 350 BIOMT1 19 -0.999996 -0.002741 0.000000 -1.73616 REMARK 350 BIOMT2 19 -0.002741 0.999996 -0.000256 -0.00290 REMARK 350 BIOMT3 19 0.000000 -0.000256 -1.000000 -4.06309 REMARK 350 BIOMT1 20 -0.501396 0.808532 -0.308024 -1.13866 REMARK 350 BIOMT2 20 0.808532 0.311107 -0.499489 -0.98562 REMARK 350 BIOMT3 20 -0.308024 -0.499489 -0.809711 -4.43031 REMARK 350 BIOMT1 21 -0.499999 -0.808652 -0.309972 -2.71831 REMARK 350 BIOMT2 21 0.809459 -0.309143 -0.499205 -1.58904 REMARK 350 BIOMT3 21 0.307858 -0.500512 0.809143 -0.60892 REMARK 350 BIOMT1 22 -0.999996 0.000000 -0.002662 -1.73889 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000252 -1.94967 REMARK 350 BIOMT3 22 -0.002662 0.000252 0.999996 -0.00207 REMARK 350 BIOMT1 23 -0.499995 0.808049 -0.311546 -1.14507 REMARK 350 BIOMT2 23 -0.809904 -0.308891 0.498640 -0.96532 REMARK 350 BIOMT3 23 0.306692 0.501640 0.808887 0.36674 REMARK 350 BIOMT1 24 0.309019 0.498800 -0.809757 -1.75748 REMARK 350 BIOMT2 24 -0.500993 0.809094 0.307203 0.00367 REMARK 350 BIOMT3 24 0.808402 0.310751 0.499921 -0.01218 REMARK 350 BIOMT1 25 0.309017 -0.500377 -0.808784 -2.72980 REMARK 350 BIOMT2 25 0.499829 0.808938 -0.309500 -0.38180 REMARK 350 BIOMT3 25 0.809123 -0.308613 0.500079 -0.61517 REMARK 350 BIOMT1 26 0.002703 -0.001455 -0.999995 -2.89723 REMARK 350 BIOMT2 26 -0.999996 -0.001245 -0.002701 -1.84853 REMARK 350 BIOMT3 26 -0.001241 0.999998 -0.001458 -1.06037 REMARK 350 BIOMT1 27 -0.307645 -0.502044 -0.808273 -3.26488 REMARK 350 BIOMT2 27 -0.501015 0.807644 -0.310957 -1.25350 REMARK 350 BIOMT3 27 0.808912 0.309293 -0.499999 -2.04442 REMARK 350 BIOMT1 28 -0.809017 -0.309798 -0.499517 -2.88477 REMARK 350 BIOMT2 28 0.308363 0.499794 -0.809394 -1.86469 REMARK 350 BIOMT3 28 0.500404 -0.808846 -0.308811 -3.01372 REMARK 350 BIOMT1 29 -0.808534 0.309607 -0.500417 -2.28220 REMARK 350 BIOMT2 29 0.309607 -0.499358 -0.809188 -2.83746 REMARK 350 BIOMT3 29 -0.500417 -0.809188 0.307891 -2.62873 REMARK 350 BIOMT1 30 -0.306863 0.500173 -0.809730 -2.28990 REMARK 350 BIOMT2 30 -0.499004 -0.809016 -0.310625 -2.82748 REMARK 350 BIOMT3 30 -0.810451 0.308739 0.497846 -1.42149 REMARK 350 BIOMT1 31 0.807682 0.311949 0.500338 1.15388 REMARK 350 BIOMT2 31 -0.308237 -0.499997 0.809316 -0.08574 REMARK 350 BIOMT3 31 0.502633 -0.807892 -0.307684 -3.00857 REMARK 350 BIOMT1 32 0.809862 -0.307452 0.499596 0.55030 REMARK 350 BIOMT2 32 -0.309732 0.499154 0.809266 0.88713 REMARK 350 BIOMT3 32 -0.498185 -0.810135 0.309018 -2.62543 REMARK 350 BIOMT1 33 0.309019 -0.500993 0.808402 0.55479 REMARK 350 BIOMT2 33 0.498800 0.809094 0.310751 0.87745 REMARK 350 BIOMT3 33 -0.809757 0.307202 0.499921 -1.41817 REMARK 350 BIOMT1 34 -0.002699 -0.001207 0.999996 1.16115 REMARK 350 BIOMT2 34 0.999995 0.001497 0.002701 -0.10141 REMARK 350 BIOMT3 34 -0.001500 0.999998 0.001203 -1.05519 REMARK 350 BIOMT1 35 0.305491 0.501219 0.809601 1.53141 REMARK 350 BIOMT2 35 0.501219 -0.807566 0.310832 -0.69669 REMARK 350 BIOMT3 35 0.809601 0.310832 -0.497925 -2.03811 REMARK 350 BIOMT1 36 -0.310386 0.498158 0.809629 0.99468 REMARK 350 BIOMT2 36 0.498773 0.810385 -0.307410 -0.37706 REMARK 350 BIOMT3 36 -0.809250 0.308406 -0.500000 -3.44782 REMARK 350 BIOMT1 37 0.497779 0.809496 0.311339 0.98650 REMARK 350 BIOMT2 37 0.810748 -0.306798 -0.498561 -1.58432 REMARK 350 BIOMT3 37 -0.308065 0.500590 -0.809015 -3.45376 REMARK 350 BIOMT1 38 0.999993 0.002741 0.002661 0.00807 REMARK 350 BIOMT2 38 0.002741 -0.999996 0.000004 -1.94780 REMARK 350 BIOMT3 38 0.002661 0.000004 -0.999996 -4.06052 REMARK 350 BIOMT1 39 0.502213 -0.807200 0.310178 -0.58845 REMARK 350 BIOMT2 39 -0.808609 -0.311233 0.499285 -0.96517 REMARK 350 BIOMT3 39 -0.306485 -0.501560 -0.809014 -4.42958 REMARK 350 BIOMT1 40 -0.307645 -0.501015 0.808912 0.02131 REMARK 350 BIOMT2 40 -0.502044 0.807644 0.309293 0.00560 REMARK 350 BIOMT3 40 -0.808273 -0.310957 -0.499999 -4.05091 REMARK 350 BIOMT1 41 -0.499999 0.809459 0.307858 0.11457 REMARK 350 BIOMT2 41 -0.808652 -0.309143 -0.500512 -2.99418 REMARK 350 BIOMT3 41 -0.309972 -0.499205 0.809143 -1.14315 REMARK 350 BIOMT1 42 0.500823 0.808574 -0.308844 -0.27162 REMARK 350 BIOMT2 42 -0.808128 0.309017 -0.501436 -2.39284 REMARK 350 BIOMT3 42 -0.310010 0.500716 0.808194 -0.17009 REMARK 350 BIOMT1 43 0.809862 -0.309732 -0.498185 -1.47884 REMARK 350 BIOMT2 43 -0.307452 0.499154 -0.810135 -2.40058 REMARK 350 BIOMT3 43 0.499596 0.809266 0.309018 -0.18154 REMARK 350 BIOMT1 44 0.000038 -0.999999 0.001497 -1.83876 REMARK 350 BIOMT2 44 0.001459 -0.001496 -0.999998 -3.00670 REMARK 350 BIOMT3 44 0.999999 0.000040 0.001459 -1.16168 REMARK 350 BIOMT1 45 -0.809501 -0.308300 0.499659 -0.85398 REMARK 350 BIOMT2 45 -0.308300 -0.501051 -0.808640 -3.37357 REMARK 350 BIOMT3 45 0.499659 -0.808640 0.310553 -1.75598 REMARK 350 BIOMT1 46 0.807682 -0.308237 0.502633 0.55381 REMARK 350 BIOMT2 46 0.311949 -0.499997 -0.807892 -2.83343 REMARK 350 BIOMT3 46 0.500338 0.809316 -0.307684 -1.43363 REMARK 350 BIOMT1 47 0.308230 -0.497954 0.810578 0.56149 REMARK 350 BIOMT2 47 -0.497954 -0.810463 -0.308532 -2.82373 REMARK 350 BIOMT3 47 0.810578 -0.308532 -0.497766 -2.64088 REMARK 350 BIOMT1 48 0.000038 0.001459 0.999999 1.16613 REMARK 350 BIOMT2 48 -0.999999 -0.001496 0.000040 -1.84321 REMARK 350 BIOMT3 48 0.001497 -0.999998 0.001459 -3.00225 REMARK 350 BIOMT1 49 0.309017 0.499829 0.809123 1.53214 REMARK 350 BIOMT2 49 -0.500377 0.808938 -0.308613 -1.24692 REMARK 350 BIOMT3 49 -0.808784 -0.309500 0.500079 -2.01835 REMARK 350 BIOMT1 50 0.808169 0.308427 0.501734 1.15371 REMARK 350 BIOMT2 50 0.310452 0.500848 -0.807943 -1.85891 REMARK 350 BIOMT3 50 -0.500483 0.808718 0.309018 -1.04889 REMARK 350 BIOMT1 51 -0.310386 0.498773 -0.809250 -2.29335 REMARK 350 BIOMT2 51 0.498158 0.810385 0.308406 0.87339 REMARK 350 BIOMT3 51 0.809629 -0.307410 -0.500000 -2.64514 REMARK 350 BIOMT1 52 -0.000041 0.001203 -0.999999 -2.89703 REMARK 350 BIOMT2 52 0.999999 0.001244 -0.000040 -0.10722 REMARK 350 BIOMT3 52 0.001244 -0.999999 -0.001203 -3.00788 REMARK 350 BIOMT1 53 -0.306863 -0.499004 -0.810451 -3.26566 REMARK 350 BIOMT2 53 0.500173 -0.809016 0.308739 -0.70326 REMARK 350 BIOMT3 53 -0.809730 -0.310625 0.497846 -2.02480 REMARK 350 BIOMT1 54 -0.806834 -0.310578 -0.502554 -2.88980 REMARK 350 BIOMT2 54 -0.310578 -0.500644 0.808020 -0.09103 REMARK 350 BIOMT3 54 -0.502554 0.808020 0.307478 -1.05450 REMARK 350 BIOMT1 55 -0.809011 0.306082 -0.501812 -2.28888 REMARK 350 BIOMT2 55 -0.311823 0.500202 0.807815 0.88339 REMARK 350 BIOMT3 55 0.498265 0.810008 -0.309225 -1.43789 REMARK 350 BIOMT1 56 0.002703 -0.999996 -0.001241 -1.84201 REMARK 350 BIOMT2 56 -0.001455 -0.001245 0.999998 1.05385 REMARK 350 BIOMT3 56 -0.999995 -0.002701 -0.001458 -2.90376 REMARK 350 BIOMT1 57 -0.809011 -0.311823 0.498265 -0.85982 REMARK 350 BIOMT2 57 0.306082 0.500202 0.810008 1.42341 REMARK 350 BIOMT3 57 -0.501812 0.807815 -0.309225 -2.30684 REMARK 350 BIOMT1 58 -0.503037 0.807278 0.308637 0.11139 REMARK 350 BIOMT2 58 0.807278 0.311359 0.501357 1.04668 REMARK 350 BIOMT3 58 0.308637 0.501357 -0.808322 -2.91709 REMARK 350 BIOMT1 59 0.497779 0.810748 -0.308065 -0.27055 REMARK 350 BIOMT2 59 0.809496 -0.306798 0.500590 0.44429 REMARK 350 BIOMT3 59 0.311339 -0.498561 -0.809015 -3.89116 REMARK 350 BIOMT1 60 0.810343 -0.306208 -0.499580 -1.47782 REMARK 350 BIOMT2 60 0.309672 -0.499998 0.808768 0.44872 REMARK 350 BIOMT3 60 -0.497440 -0.810086 -0.310346 -3.88293 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 546 REMARK 465 GLN A 547 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 109 69.04 61.13 REMARK 500 ARG A 240 54.19 -93.12 REMARK 500 LYS A 253 122.74 -39.00 REMARK 500 LYS A 263 117.20 -160.48 REMARK 500 SER A 340 33.31 -95.60 REMARK 500 TRP A 499 57.84 -98.04 REMARK 500 PHE A 543 53.30 -92.76 REMARK 500 GLU B 109 68.65 60.50 REMARK 500 ARG B 240 52.90 -92.24 REMARK 500 LYS B 253 134.07 -39.79 REMARK 500 SER B 340 31.88 -93.80 REMARK 500 TRP B 499 57.71 -94.41 REMARK 500 PHE B 543 57.96 -101.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-19878 RELATED DB: EMDB REMARK 900 HUMAN PICOBIRNAVIRUS CP VLP DBREF 9EPF A 47 545 UNP Q50LE5 CAPSD_HPBVH 47 545 DBREF 9EPF B 47 545 UNP Q50LE5 CAPSD_HPBVH 47 545 SEQADV 9EPF PRO A 546 UNP Q50LE5 EXPRESSION TAG SEQADV 9EPF GLN A 547 UNP Q50LE5 EXPRESSION TAG SEQADV 9EPF PRO B 546 UNP Q50LE5 EXPRESSION TAG SEQADV 9EPF GLN B 547 UNP Q50LE5 EXPRESSION TAG SEQRES 1 A 501 VAL ALA TRP TYR ALA ARG TYR PRO HIS ILE LEU GLU GLU SEQRES 2 A 501 ALA THR ARG LEU PRO PHE ALA TYR PRO ILE GLY GLN TYR SEQRES 3 A 501 TYR ASP THR GLY TYR SER VAL ALA SER ALA THR GLU TRP SEQRES 4 A 501 SER LYS TYR VAL ASP THR SER LEU THR ILE PRO GLY VAL SEQRES 5 A 501 MET CYS VAL ASN PHE THR PRO THR PRO GLY GLU SER TYR SEQRES 6 A 501 ASN LYS ASN SER PRO ILE ASN ILE ALA ALA GLN ASN VAL SEQRES 7 A 501 TYR THR TYR VAL ARG HIS MET ASN SER GLY HIS ALA ASN SEQRES 8 A 501 TYR GLU GLN ALA ASP LEU MET MET TYR LEU LEU ALA MET SEQRES 9 A 501 ASP SER LEU TYR ILE PHE HIS SER TYR VAL ARG LYS ILE SEQRES 10 A 501 LEU ALA ILE SER LYS LEU TYR THR PRO VAL ASN LYS TYR SEQRES 11 A 501 PHE PRO ARG ALA LEU LEU VAL ALA LEU GLY VAL ASP PRO SEQRES 12 A 501 GLU ASP VAL PHE ALA ASN GLN ALA GLN TRP GLU TYR PHE SEQRES 13 A 501 VAL ASN MET VAL ALA TYR ARG ALA GLY ALA PHE ALA ALA SEQRES 14 A 501 PRO ALA SER MET THR TYR TYR GLU ARG HIS ALA TRP MET SEQRES 15 A 501 SER ASN GLY LEU TYR VAL ASP GLN ASP VAL THR ARG ALA SEQRES 16 A 501 GLN ILE TYR MET PHE LYS PRO THR MET LEU TRP LYS TYR SEQRES 17 A 501 GLU ASN LEU GLY THR THR GLY THR LYS LEU VAL PRO LEU SEQRES 18 A 501 MET MET PRO LYS ALA GLY ASP ASN ARG LYS LEU VAL ASP SEQRES 19 A 501 PHE GLN VAL LEU PHE ASN ASN LEU VAL SER THR MET LEU SEQRES 20 A 501 GLY ASP GLU ASP PHE GLY ILE MET SER GLY ASP VAL PHE SEQRES 21 A 501 LYS ALA PHE GLY ALA ASP GLY LEU VAL LYS LEU LEU ALA SEQRES 22 A 501 VAL ASP SER THR THR MET THR LEU PRO THR TYR ASP PRO SEQRES 23 A 501 LEU ILE LEU ALA GLN ILE HIS SER ALA ARG ALA VAL GLY SEQRES 24 A 501 ALA PRO ILE LEU GLU THR SER THR LEU THR GLY PHE PRO SEQRES 25 A 501 GLY ARG GLN TRP GLN ILE THR GLN ASN PRO ASP VAL ASN SEQRES 26 A 501 ASN GLY ALA ILE ILE PHE HIS PRO SER PHE GLY TYR ASP SEQRES 27 A 501 GLY GLN ASP HIS GLU GLU LEU SER PHE ARG ALA MET CYS SEQRES 28 A 501 SER ASN MET ILE LEU ASN LEU PRO GLY GLU ALA HIS SER SEQRES 29 A 501 ALA GLU MET ILE ILE GLU ALA THR ARG LEU ALA THR MET SEQRES 30 A 501 PHE GLN VAL LYS ALA VAL PRO ALA GLY ASP THR SER LYS SEQRES 31 A 501 PRO VAL LEU TYR LEU PRO ASN GLY PHE GLY THR GLU VAL SEQRES 32 A 501 VAL ASN ASP TYR THR MET ILE SER VAL ASP LYS ALA THR SEQRES 33 A 501 PRO HIS ASP LEU THR ILE HIS THR PHE PHE ASN ASN ILE SEQRES 34 A 501 LEU VAL PRO ASN ALA LYS GLU ASN TYR VAL ALA ASN LEU SEQRES 35 A 501 GLU LEU LEU ASN ASN ILE ILE GLN PHE ASP TRP ALA PRO SEQRES 36 A 501 GLN LEU TYR LEU THR TYR GLY ILE ALA GLN GLU SER PHE SEQRES 37 A 501 GLY PRO PHE ALA GLN LEU ASN ASP TRP THR ILE LEU THR SEQRES 38 A 501 GLY GLU THR LEU ALA ARG MET HIS GLU VAL CYS VAL THR SEQRES 39 A 501 SER MET PHE ASP VAL PRO GLN SEQRES 1 B 501 VAL ALA TRP TYR ALA ARG TYR PRO HIS ILE LEU GLU GLU SEQRES 2 B 501 ALA THR ARG LEU PRO PHE ALA TYR PRO ILE GLY GLN TYR SEQRES 3 B 501 TYR ASP THR GLY TYR SER VAL ALA SER ALA THR GLU TRP SEQRES 4 B 501 SER LYS TYR VAL ASP THR SER LEU THR ILE PRO GLY VAL SEQRES 5 B 501 MET CYS VAL ASN PHE THR PRO THR PRO GLY GLU SER TYR SEQRES 6 B 501 ASN LYS ASN SER PRO ILE ASN ILE ALA ALA GLN ASN VAL SEQRES 7 B 501 TYR THR TYR VAL ARG HIS MET ASN SER GLY HIS ALA ASN SEQRES 8 B 501 TYR GLU GLN ALA ASP LEU MET MET TYR LEU LEU ALA MET SEQRES 9 B 501 ASP SER LEU TYR ILE PHE HIS SER TYR VAL ARG LYS ILE SEQRES 10 B 501 LEU ALA ILE SER LYS LEU TYR THR PRO VAL ASN LYS TYR SEQRES 11 B 501 PHE PRO ARG ALA LEU LEU VAL ALA LEU GLY VAL ASP PRO SEQRES 12 B 501 GLU ASP VAL PHE ALA ASN GLN ALA GLN TRP GLU TYR PHE SEQRES 13 B 501 VAL ASN MET VAL ALA TYR ARG ALA GLY ALA PHE ALA ALA SEQRES 14 B 501 PRO ALA SER MET THR TYR TYR GLU ARG HIS ALA TRP MET SEQRES 15 B 501 SER ASN GLY LEU TYR VAL ASP GLN ASP VAL THR ARG ALA SEQRES 16 B 501 GLN ILE TYR MET PHE LYS PRO THR MET LEU TRP LYS TYR SEQRES 17 B 501 GLU ASN LEU GLY THR THR GLY THR LYS LEU VAL PRO LEU SEQRES 18 B 501 MET MET PRO LYS ALA GLY ASP ASN ARG LYS LEU VAL ASP SEQRES 19 B 501 PHE GLN VAL LEU PHE ASN ASN LEU VAL SER THR MET LEU SEQRES 20 B 501 GLY ASP GLU ASP PHE GLY ILE MET SER GLY ASP VAL PHE SEQRES 21 B 501 LYS ALA PHE GLY ALA ASP GLY LEU VAL LYS LEU LEU ALA SEQRES 22 B 501 VAL ASP SER THR THR MET THR LEU PRO THR TYR ASP PRO SEQRES 23 B 501 LEU ILE LEU ALA GLN ILE HIS SER ALA ARG ALA VAL GLY SEQRES 24 B 501 ALA PRO ILE LEU GLU THR SER THR LEU THR GLY PHE PRO SEQRES 25 B 501 GLY ARG GLN TRP GLN ILE THR GLN ASN PRO ASP VAL ASN SEQRES 26 B 501 ASN GLY ALA ILE ILE PHE HIS PRO SER PHE GLY TYR ASP SEQRES 27 B 501 GLY GLN ASP HIS GLU GLU LEU SER PHE ARG ALA MET CYS SEQRES 28 B 501 SER ASN MET ILE LEU ASN LEU PRO GLY GLU ALA HIS SER SEQRES 29 B 501 ALA GLU MET ILE ILE GLU ALA THR ARG LEU ALA THR MET SEQRES 30 B 501 PHE GLN VAL LYS ALA VAL PRO ALA GLY ASP THR SER LYS SEQRES 31 B 501 PRO VAL LEU TYR LEU PRO ASN GLY PHE GLY THR GLU VAL SEQRES 32 B 501 VAL ASN ASP TYR THR MET ILE SER VAL ASP LYS ALA THR SEQRES 33 B 501 PRO HIS ASP LEU THR ILE HIS THR PHE PHE ASN ASN ILE SEQRES 34 B 501 LEU VAL PRO ASN ALA LYS GLU ASN TYR VAL ALA ASN LEU SEQRES 35 B 501 GLU LEU LEU ASN ASN ILE ILE GLN PHE ASP TRP ALA PRO SEQRES 36 B 501 GLN LEU TYR LEU THR TYR GLY ILE ALA GLN GLU SER PHE SEQRES 37 B 501 GLY PRO PHE ALA GLN LEU ASN ASP TRP THR ILE LEU THR SEQRES 38 B 501 GLY GLU THR LEU ALA ARG MET HIS GLU VAL CYS VAL THR SEQRES 39 B 501 SER MET PHE ASP VAL PRO GLN HELIX 1 AA1 VAL A 47 TYR A 53 1 7 HELIX 2 AA2 TYR A 53 THR A 61 1 9 HELIX 3 AA3 SER A 81 TRP A 85 5 5 HELIX 4 AA4 SER A 115 MET A 131 1 17 HELIX 5 AA5 GLU A 139 SER A 167 1 29 HELIX 6 AA6 PRO A 178 GLY A 186 1 9 HELIX 7 AA7 ASP A 188 ASN A 195 1 8 HELIX 8 AA8 ASN A 195 GLY A 211 1 17 HELIX 9 AA9 THR A 220 ASN A 230 1 11 HELIX 10 AB1 LYS A 277 VAL A 289 1 13 HELIX 11 AB2 ASP A 295 PHE A 309 1 15 HELIX 12 AB3 GLY A 310 LEU A 314 5 5 HELIX 13 AB4 ASP A 331 SER A 340 1 10 HELIX 14 AB5 VAL A 370 GLY A 373 5 4 HELIX 15 AB6 GLU A 390 SER A 398 5 9 HELIX 16 AB7 SER A 410 ALA A 417 1 8 HELIX 17 AB8 GLU A 482 PHE A 497 1 16 HELIX 18 AB9 THR A 527 PHE A 543 1 17 HELIX 19 AC1 ALA B 48 TYR B 53 1 6 HELIX 20 AC2 TYR B 53 THR B 61 1 9 HELIX 21 AC3 VAL B 79 GLU B 84 5 6 HELIX 22 AC4 SER B 115 ASN B 132 1 18 HELIX 23 AC5 GLU B 139 SER B 167 1 29 HELIX 24 AC6 PRO B 178 GLY B 186 1 9 HELIX 25 AC7 ASP B 188 ASN B 195 1 8 HELIX 26 AC8 ASN B 195 GLY B 211 1 17 HELIX 27 AC9 MET B 219 ASN B 230 1 12 HELIX 28 AD1 LYS B 277 VAL B 289 1 13 HELIX 29 AD2 ASP B 295 PHE B 309 1 15 HELIX 30 AD3 GLY B 310 LEU B 314 5 5 HELIX 31 AD4 ASP B 331 SER B 340 1 10 HELIX 32 AD5 VAL B 370 ALA B 374 5 5 HELIX 33 AD6 GLU B 390 SER B 398 5 9 HELIX 34 AD7 SER B 410 ALA B 417 1 8 HELIX 35 AD8 GLU B 482 PHE B 497 1 16 HELIX 36 AD9 THR B 527 PHE B 543 1 17 SHEET 1 AA1 2 TYR A 73 ASP A 74 0 SHEET 2 AA1 2 SER A 92 LEU A 93 -1 O LEU A 93 N TYR A 73 SHEET 1 AA2 6 THR A 329 TYR A 330 0 SHEET 2 AA2 6 TYR A 233 VAL A 234 1 N VAL A 234 O THR A 329 SHEET 3 AA2 6 ILE A 243 PRO A 248 -1 O TYR A 244 N TYR A 233 SHEET 4 AA2 6 VAL A 98 PHE A 103 1 N VAL A 101 O MET A 245 SHEET 5 AA2 6 ASP A 452 VAL A 458 -1 O THR A 454 N CYS A 100 SHEET 6 AA2 6 LEU A 466 PHE A 471 -1 O HIS A 469 N MET A 455 SHEET 1 AA3 2 MET A 250 LEU A 251 0 SHEET 2 AA3 2 LEU A 267 MET A 268 -1 O LEU A 267 N LEU A 251 SHEET 1 AA4 3 LYS A 263 LEU A 264 0 SHEET 2 AA4 3 ILE A 364 GLN A 366 -1 O ILE A 364 N LEU A 264 SHEET 3 AA4 3 ILE A 375 ILE A 376 -1 O ILE A 376 N THR A 365 SHEET 1 AA5 2 ILE A 401 ASN A 403 0 SHEET 2 AA5 2 TRP A 523 ILE A 525 -1 O THR A 524 N LEU A 402 SHEET 1 AA6 2 PHE A 424 LYS A 427 0 SHEET 2 AA6 2 TYR A 440 PRO A 442 -1 O LEU A 441 N VAL A 426 SHEET 1 AA7 3 ASN A 474 VAL A 477 0 SHEET 2 AA7 3 TYR A 504 TYR A 507 1 O THR A 506 N ILE A 475 SHEET 3 AA7 3 GLU A 512 SER A 513 -1 O GLU A 512 N TYR A 507 SHEET 1 AA8 2 TYR B 73 ASP B 74 0 SHEET 2 AA8 2 SER B 92 LEU B 93 -1 O LEU B 93 N TYR B 73 SHEET 1 AA9 6 PRO B 328 THR B 329 0 SHEET 2 AA9 6 LEU B 232 VAL B 234 1 N LEU B 232 O THR B 329 SHEET 3 AA9 6 ILE B 243 PRO B 248 -1 O TYR B 244 N TYR B 233 SHEET 4 AA9 6 VAL B 98 PRO B 105 1 N VAL B 101 O MET B 245 SHEET 5 AA9 6 GLU B 448 VAL B 458 -1 O THR B 454 N CYS B 100 SHEET 6 AA9 6 LEU B 466 PHE B 471 -1 O PHE B 471 N TYR B 453 SHEET 1 AB1 2 MET B 250 LEU B 251 0 SHEET 2 AB1 2 LEU B 267 MET B 268 -1 O LEU B 267 N LEU B 251 SHEET 1 AB2 2 THR B 262 LEU B 264 0 SHEET 2 AB2 2 ILE B 364 GLN B 366 -1 O GLN B 366 N THR B 262 SHEET 1 AB3 2 ILE B 401 LEU B 404 0 SHEET 2 AB3 2 ASP B 522 ILE B 525 -1 O THR B 524 N LEU B 402 SHEET 1 AB4 2 PHE B 424 LYS B 427 0 SHEET 2 AB4 2 TYR B 440 PRO B 442 -1 O LEU B 441 N VAL B 426 SHEET 1 AB5 3 ASN B 474 VAL B 477 0 SHEET 2 AB5 3 TYR B 504 TYR B 507 1 O THR B 506 N ILE B 475 SHEET 3 AB5 3 GLU B 512 SER B 513 -1 O GLU B 512 N TYR B 507 CISPEP 1 PHE A 177 PRO A 178 0 -6.00 CISPEP 2 THR A 462 PRO A 463 0 1.04 CISPEP 3 PHE B 177 PRO B 178 0 -5.37 CISPEP 4 THR B 462 PRO B 463 0 1.46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 315 0 0 36 39 0 0 6 7902 2 0 78 END