HEADER OXIDOREDUCTASE 28-MAR-24 9EV3 TITLE CORYNEBACTERIUM GLUTAMICUM PYRUVATE:QUINONE OXIDOREDUCTASE (PQO) TITLE 2 PURIFIED FROM BACTERIA GROWN IN ACETATE MINIMAL MEDIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE PYROPHOSPHATE-REQUIRING ENZYMES [ACETOLACTATE COMPND 3 SYNTHASE, PYRUVATE DEHYDROGENASE (CYTOCHROME), GLYOXYLATE COMPND 4 CARBOLIGASE, PHOSPHONOPYRUVATE DECARBOXYLASE]; COMPND 5 CHAIN: A; COMPND 6 SYNONYM: PYRUVATE:QUINONE OXIDOREDUCTASE; COMPND 7 EC: 1.2.5.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627 KEYWDS PYRUVATE:QUINONE OXIDOREDUCTASE, PYRUVATE, CARBON METABOLISM, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DA SILVA LAMEIRA,S.MUENSSINGER,L.YANG,B.J.EIKMANNS,M.BELLINZONI REVDAT 1 07-AUG-24 9EV3 0 JRNL AUTH C.DA SILVA LAMEIRA,S.MUNSSINGER,L.YANG,B.J.EIKMANNS, JRNL AUTH 2 M.BELLINZONI JRNL TITL CORYNEBACTERIUM GLUTAMICUM PYRUVATE:QUINONE OXIDOREDUCTASE: JRNL TITL 2 AN ENIGMATIC METABOLIC ENZYME WITH UNUSUAL STRUCTURAL JRNL TITL 3 FEATURES. JRNL REF FEBS J. 2024 JRNL REFN ISSN 1742-464X JRNL PMID 39080980 JRNL DOI 10.1111/FEBS.17232 REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 77.6 REMARK 3 NUMBER OF REFLECTIONS : 144896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7182 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.56 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2449 REMARK 3 BIN FREE R VALUE : 0.2697 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 592 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44400 REMARK 3 B22 (A**2) : -0.27040 REMARK 3 B33 (A**2) : -0.17360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.150 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.049 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.049 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.047 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.048 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4604 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6295 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2127 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 829 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4604 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 619 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5125 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.90 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.56 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|2 - 90} REMARK 3 ORIGIN FOR THE GROUP (A): -13.2696 49.7047 18.8505 REMARK 3 T TENSOR REMARK 3 T11: -0.0293 T22: -0.0217 REMARK 3 T33: -0.031 T12: -0.0249 REMARK 3 T13: 0.0062 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.5395 L22: 0.4288 REMARK 3 L33: 0.6668 L12: 0.0364 REMARK 3 L13: 0.1777 L23: -0.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: 0.0413 S13: 0.0412 REMARK 3 S21: 0.0413 S22: -0.0475 S23: -0.1054 REMARK 3 S31: 0.0412 S32: -0.1054 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|91 - 164} REMARK 3 ORIGIN FOR THE GROUP (A): -12.6712 53.714 6.9599 REMARK 3 T TENSOR REMARK 3 T11: -0.0455 T22: -0.0347 REMARK 3 T33: -0.0426 T12: -0.0041 REMARK 3 T13: -0.0035 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.2269 L22: 0.5763 REMARK 3 L33: 0.3221 L12: -0.0031 REMARK 3 L13: 0.0798 L23: -0.1016 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.0079 S13: 0.0253 REMARK 3 S21: 0.0079 S22: -0.0256 S23: -0.0371 REMARK 3 S31: 0.0253 S32: -0.0371 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|165 - 200} REMARK 3 ORIGIN FOR THE GROUP (A): -3.2915 30.5644 1.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: -0.0092 REMARK 3 T33: -0.0088 T12: -0.0082 REMARK 3 T13: -0.0261 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.8777 L22: 0.7736 REMARK 3 L33: 0.3664 L12: -0.9299 REMARK 3 L13: -0.2914 L23: 0.1504 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.0039 S13: 0.1496 REMARK 3 S21: 0.0039 S22: -0.0142 S23: -0.0087 REMARK 3 S31: 0.1496 S32: -0.0087 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|201 - 328} REMARK 3 ORIGIN FOR THE GROUP (A): 17.1788 27.4643 10.7658 REMARK 3 T TENSOR REMARK 3 T11: 0.0115 T22: -0.0279 REMARK 3 T33: -0.0057 T12: 0.0332 REMARK 3 T13: -0.0132 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.471 L22: 0.3843 REMARK 3 L33: 0.9359 L12: -0.0728 REMARK 3 L13: 0.252 L23: -0.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: -0.0258 S13: 0.2027 REMARK 3 S21: -0.0258 S22: -0.0439 S23: 0.0785 REMARK 3 S31: 0.2027 S32: 0.0785 S33: -0.0185 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|329 - 371} REMARK 3 ORIGIN FOR THE GROUP (A): 24.1651 33.6112 32.9788 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0505 REMARK 3 T33: 0.0163 T12: 0.0082 REMARK 3 T13: -0.0325 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 1.0066 L22: 1.0357 REMARK 3 L33: 0.7915 L12: -0.5169 REMARK 3 L13: -0.2368 L23: 0.3335 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.1481 S13: 0.0843 REMARK 3 S21: 0.1481 S22: 0.0741 S23: 0.1837 REMARK 3 S31: 0.0843 S32: 0.1837 S33: -0.0669 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|372 - 462} REMARK 3 ORIGIN FOR THE GROUP (A): 3.56 42.7796 30.1585 REMARK 3 T TENSOR REMARK 3 T11: -0.0056 T22: -0.0231 REMARK 3 T33: -0.0322 T12: -0.0183 REMARK 3 T13: -0.0018 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.4508 L22: 0.2888 REMARK 3 L33: 0.4072 L12: -0.0367 REMARK 3 L13: -0.0809 L23: -0.0874 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.0526 S13: 0.0703 REMARK 3 S21: 0.0526 S22: -0.0206 S23: 0.0229 REMARK 3 S31: 0.0703 S32: 0.0229 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|463 - 519} REMARK 3 ORIGIN FOR THE GROUP (A): 13.3586 51.9593 37.9366 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: 0.1042 REMARK 3 T33: 0.0095 T12: -0.0354 REMARK 3 T13: -0.019 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.122 L22: 0.7646 REMARK 3 L33: 0.4523 L12: -0.3496 REMARK 3 L13: 0.1197 L23: -0.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0949 S13: -0.0054 REMARK 3 S21: 0.0949 S22: -0.0311 S23: 0.2368 REMARK 3 S31: -0.0054 S32: 0.2368 S33: 0.0155 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|520 - 578} REMARK 3 ORIGIN FOR THE GROUP (A): 21.364 39.2735 27.308 REMARK 3 T TENSOR REMARK 3 T11: 0.0144 T22: 0.0355 REMARK 3 T33: 0.0193 T12: -0.0036 REMARK 3 T13: -0.0198 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.3791 L22: 0.2768 REMARK 3 L33: 0.3054 L12: -0.1135 REMARK 3 L13: 0.0993 L23: -0.1032 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0368 S13: 0.0655 REMARK 3 S21: 0.0368 S22: -0.0352 S23: 0.1426 REMARK 3 S31: 0.0655 S32: 0.1426 S33: 0.0279 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.13 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 144969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.219 REMARK 200 RESOLUTION RANGE LOW (A) : 77.652 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 12.16 REMARK 200 R MERGE (I) : 0.12060 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 77.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.07680 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 27.47 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EYA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22 % (W/V) PEG 4000, 0.2 M (NH4)2SO4, REMARK 280 0.1 M SODIUM ACETATE, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.02200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.53600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.65250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.02200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.53600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.65250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.02200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.53600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.65250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.02200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.53600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.65250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.07200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 119.07200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 579 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 472 CG CD OE1 OE2 REMARK 470 GLU A 516 CG CD OE1 OE2 REMARK 470 LEU A 535 CG CD1 CD2 REMARK 470 LYS A 551 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 -109.82 33.66 REMARK 500 CYS A 123 31.07 -99.50 REMARK 500 ASN A 286 85.62 -155.66 REMARK 500 GLU A 397 11.12 59.39 REMARK 500 SER A 405 64.11 -103.80 REMARK 500 PRO A 455 34.87 -82.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1291 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1292 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 436 OD1 REMARK 620 2 ASN A 463 OD1 81.0 REMARK 620 3 SER A 465 O 107.6 85.6 REMARK 620 4 TPP A 602 O2A 93.0 174.0 96.6 REMARK 620 5 TPP A 602 O2B 167.9 108.0 81.6 77.9 REMARK 620 6 HOH A 720 O 82.2 93.0 169.7 85.8 89.2 REMARK 620 N 1 2 3 4 5 DBREF 9EV3 A 1 579 UNP Q8NMG5 Q8NMG5_CORGL 1 579 SEQRES 1 A 579 MET ALA HIS SER TYR ALA GLU GLN LEU ILE ASP THR LEU SEQRES 2 A 579 GLU ALA GLN GLY VAL LYS ARG ILE TYR GLY LEU VAL GLY SEQRES 3 A 579 ASP SER LEU ASN PRO ILE VAL ASP ALA VAL ARG GLN SER SEQRES 4 A 579 ASP ILE GLU TRP VAL HIS VAL ARG ASN GLU GLU ALA ALA SEQRES 5 A 579 ALA PHE ALA ALA GLY ALA GLU SER LEU ILE THR GLY GLU SEQRES 6 A 579 LEU ALA VAL CYS ALA ALA SER CYS GLY PRO GLY ASN THR SEQRES 7 A 579 HIS LEU ILE GLN GLY LEU TYR ASP SER HIS ARG ASN GLY SEQRES 8 A 579 ALA LYS VAL LEU ALA ILE ALA SER HIS ILE PRO SER ALA SEQRES 9 A 579 GLN ILE GLY SER THR PHE PHE GLN GLU THR HIS PRO GLU SEQRES 10 A 579 ILE LEU PHE LYS GLU CYS SER GLY TYR CYS GLU MET VAL SEQRES 11 A 579 ASN GLY GLY GLU GLN GLY GLU ARG ILE LEU HIS HIS ALA SEQRES 12 A 579 ILE GLN SER THR MET ALA GLY LYS GLY VAL SER VAL VAL SEQRES 13 A 579 VAL ILE PRO GLY ASP ILE ALA LYS GLU ASP ALA GLY ASP SEQRES 14 A 579 GLY THR TYR SER ASN SER THR ILE SER SER GLY THR PRO SEQRES 15 A 579 VAL VAL PHE PRO ASP PRO THR GLU ALA ALA ALA LEU VAL SEQRES 16 A 579 GLU ALA ILE ASN ASN ALA LYS SER VAL THR LEU PHE CYS SEQRES 17 A 579 GLY ALA GLY VAL LYS ASN ALA ARG ALA GLN VAL LEU GLU SEQRES 18 A 579 LEU ALA GLU LYS ILE LYS SER PRO ILE GLY HIS ALA LEU SEQRES 19 A 579 GLY GLY LYS GLN TYR ILE GLN HIS GLU ASN PRO PHE GLU SEQRES 20 A 579 VAL GLY MET SER GLY LEU LEU GLY TYR GLY ALA CYS VAL SEQRES 21 A 579 ASP ALA SER ASN GLU ALA ASP LEU LEU ILE LEU LEU GLY SEQRES 22 A 579 THR ASP PHE PRO TYR SER ASP PHE LEU PRO LYS ASP ASN SEQRES 23 A 579 VAL ALA GLN VAL ASP ILE ASN GLY ALA HIS ILE GLY ARG SEQRES 24 A 579 ARG THR THR VAL LYS TYR PRO VAL THR GLY ASP VAL ALA SEQRES 25 A 579 ALA THR ILE GLU ASN ILE LEU PRO HIS VAL LYS GLU LYS SEQRES 26 A 579 THR ASP ARG SER PHE LEU ASP ARG MET LEU LYS ALA HIS SEQRES 27 A 579 GLU ARG LYS LEU SER SER VAL VAL GLU THR TYR THR HIS SEQRES 28 A 579 ASN VAL GLU LYS HIS VAL PRO ILE HIS PRO GLU TYR VAL SEQRES 29 A 579 ALA SER ILE LEU ASN GLU LEU ALA ASP LYS ASP ALA VAL SEQRES 30 A 579 PHE THR VAL ASP THR GLY MET CYS ASN VAL TRP HIS ALA SEQRES 31 A 579 ARG TYR ILE GLU ASN PRO GLU GLY THR ARG ASP PHE VAL SEQRES 32 A 579 GLY SER PHE ARG HIS GLY THR MET ALA ASN ALA LEU PRO SEQRES 33 A 579 HIS ALA ILE GLY ALA GLN SER VAL ASP ARG ASN ARG GLN SEQRES 34 A 579 VAL ILE ALA MET CYS GLY ASP GLY GLY LEU GLY MET LEU SEQRES 35 A 579 LEU GLY GLU LEU LEU THR VAL LYS LEU HIS GLN LEU PRO SEQRES 36 A 579 LEU LYS ALA VAL VAL PHE ASN ASN SER SER LEU GLY MET SEQRES 37 A 579 VAL LYS LEU GLU MET LEU VAL GLU GLY GLN PRO GLU PHE SEQRES 38 A 579 GLY THR ASP HIS GLU GLU VAL ASN PHE ALA GLU ILE ALA SEQRES 39 A 579 ALA ALA ALA GLY ILE LYS SER VAL ARG ILE THR ASP PRO SEQRES 40 A 579 LYS LYS VAL ARG GLU GLN LEU ALA GLU ALA LEU ALA TYR SEQRES 41 A 579 PRO GLY PRO VAL LEU ILE ASP ILE VAL THR ASP PRO ASN SEQRES 42 A 579 ALA LEU SER ILE PRO PRO THR ILE THR TRP GLU GLN VAL SEQRES 43 A 579 MET GLY PHE SER LYS ALA ALA THR ARG THR VAL PHE GLY SEQRES 44 A 579 GLY GLY VAL GLY ALA MET ILE ASP LEU ALA ARG SER ASN SEQRES 45 A 579 ILE ARG ASN ILE PRO THR PRO HET FAD A 601 53 HET TPP A 602 26 HET MG A 603 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM TPP THIAMINE DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 4 MG MG 2+ FORMUL 5 HOH *592(H2 O) HELIX 1 AA1 SER A 4 GLN A 16 1 13 HELIX 2 AA2 GLY A 26 SER A 28 5 3 HELIX 3 AA3 LEU A 29 SER A 39 1 11 HELIX 4 AA4 ASN A 48 GLY A 64 1 17 HELIX 5 AA5 GLY A 74 HIS A 79 1 6 HELIX 6 AA6 LEU A 80 ASN A 90 1 11 HELIX 7 AA7 PRO A 102 ILE A 106 5 5 HELIX 8 AA8 HIS A 115 PHE A 120 1 6 HELIX 9 AA9 GLY A 132 ALA A 149 1 18 HELIX 10 AB1 ASP A 161 GLU A 165 5 5 HELIX 11 AB2 ASP A 187 ALA A 201 1 15 HELIX 12 AB3 ALA A 210 LYS A 213 5 4 HELIX 13 AB4 ALA A 215 LYS A 227 1 13 HELIX 14 AB5 GLY A 236 GLN A 241 1 6 HELIX 15 AB6 ALA A 258 ALA A 266 1 9 HELIX 16 AB7 TYR A 278 LEU A 282 5 5 HELIX 17 AB8 ASN A 293 ILE A 297 5 5 HELIX 18 AB9 ASP A 310 LEU A 319 1 10 HELIX 19 AC1 PRO A 320 VAL A 322 5 3 HELIX 20 AC2 ARG A 328 THR A 350 1 23 HELIX 21 AC3 ASN A 352 HIS A 356 5 5 HELIX 22 AC4 HIS A 360 ALA A 372 1 13 HELIX 23 AC5 GLY A 383 ILE A 393 1 11 HELIX 24 AC6 ASN A 395 THR A 399 5 5 HELIX 25 AC7 ASN A 413 ASP A 425 1 13 HELIX 26 AC8 ASP A 436 LEU A 442 1 7 HELIX 27 AC9 GLY A 444 GLN A 453 1 10 HELIX 28 AD1 LEU A 466 GLY A 477 1 12 HELIX 29 AD2 ASN A 489 ALA A 497 1 9 HELIX 30 AD3 ASP A 506 LYS A 508 5 3 HELIX 31 AD4 LYS A 509 ALA A 519 1 11 HELIX 32 AD5 THR A 542 GLY A 548 1 7 HELIX 33 AD6 ALA A 564 ASN A 575 1 12 SHEET 1 AA1 6 GLU A 42 HIS A 45 0 SHEET 2 AA1 6 ARG A 20 GLY A 23 1 N ILE A 21 O VAL A 44 SHEET 3 AA1 6 ALA A 67 ALA A 71 1 O ALA A 70 N TYR A 22 SHEET 4 AA1 6 VAL A 94 HIS A 100 1 O ILE A 97 N CYS A 69 SHEET 5 AA1 6 SER A 154 PRO A 159 1 O SER A 154 N ALA A 96 SHEET 6 AA1 6 TYR A 126 MET A 129 1 N GLU A 128 O VAL A 157 SHEET 1 AA2 6 GLU A 247 MET A 250 0 SHEET 2 AA2 6 ILE A 230 HIS A 232 1 N ILE A 230 O VAL A 248 SHEET 3 AA2 6 VAL A 204 CYS A 208 1 N CYS A 208 O GLY A 231 SHEET 4 AA2 6 LEU A 268 LEU A 272 1 O ILE A 270 N PHE A 207 SHEET 5 AA2 6 VAL A 287 ASP A 291 1 O ALA A 288 N LEU A 271 SHEET 6 AA2 6 TYR A 305 THR A 308 1 O VAL A 307 N GLN A 289 SHEET 1 AA3 6 ASP A 401 GLY A 404 0 SHEET 2 AA3 6 VAL A 377 VAL A 380 1 N PHE A 378 O ASP A 401 SHEET 3 AA3 6 VAL A 430 GLY A 435 1 O MET A 433 N THR A 379 SHEET 4 AA3 6 LYS A 457 ASN A 462 1 O PHE A 461 N CYS A 434 SHEET 5 AA3 6 VAL A 524 VAL A 529 1 O ILE A 526 N VAL A 460 SHEET 6 AA3 6 LYS A 500 ILE A 504 1 N VAL A 502 O ASP A 527 LINK OD1 ASP A 436 MG MG A 603 1555 1555 2.25 LINK OD1 ASN A 463 MG MG A 603 1555 1555 2.49 LINK O SER A 465 MG MG A 603 1555 1555 2.14 LINK O2A TPP A 602 MG MG A 603 1555 1555 2.48 LINK O2B TPP A 602 MG MG A 603 1555 1555 2.28 LINK MG MG A 603 O HOH A 720 1555 1555 2.25 CISPEP 1 VAL A 357 PRO A 358 0 -10.77 CRYST1 68.044 119.072 155.305 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014696 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006439 0.00000