HEADER NUCLEAR PROTEIN 03-APR-24 9EWB TITLE DNA POLYMERASE LAMBDA I493R, TTP:AT CA2+ GROUND STATE TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'); COMPND 15 CHAIN: G; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: H; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS DNA REPAIR, GAP-FILLING, NHEJ, DNA POLYMERASE, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.NOURISSON,A.HAOUZ,S.MISSOURY,M.DELARUE REVDAT 2 10-SEP-25 9EWB 1 JRNL REVDAT 1 23-JUL-25 9EWB 0 JRNL AUTH A.NOURISSON,S.MISSOURY,S.LUCAS-STAAT,A.HAOUZ,M.DELARUE JRNL TITL FIDELITY, SPECIALIZATION, AND EVOLUTION OF PARAMECIUM POLX JRNL TITL 2 DNA POLYMERASES INVOLVED IN PROGRAMMED DOUBLE-STRAND BREAK JRNL TITL 3 DNA REPAIR. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 40829804 JRNL DOI 10.1093/NAR/GKAF786 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8300 - 5.5900 1.00 1560 156 0.2292 0.2159 REMARK 3 2 5.5900 - 4.4400 1.00 1472 146 0.1763 0.1765 REMARK 3 3 4.4400 - 3.8800 1.00 1468 145 0.1609 0.1904 REMARK 3 4 3.8800 - 3.5200 1.00 1426 143 0.1724 0.2127 REMARK 3 5 3.5200 - 3.2700 1.00 1440 143 0.2048 0.2256 REMARK 3 6 3.2700 - 3.0800 1.00 1440 144 0.2015 0.2294 REMARK 3 7 3.0800 - 2.9200 1.00 1418 140 0.2120 0.2308 REMARK 3 8 2.9200 - 2.8000 1.00 1417 141 0.2381 0.3186 REMARK 3 9 2.8000 - 2.6900 1.00 1407 140 0.2608 0.3150 REMARK 3 10 2.6900 - 2.6000 1.00 1427 142 0.2314 0.2643 REMARK 3 11 2.6000 - 2.5100 1.00 1424 141 0.2279 0.2914 REMARK 3 12 2.5100 - 2.4400 1.00 1402 139 0.2456 0.2736 REMARK 3 13 2.4400 - 2.3800 1.00 1424 142 0.2735 0.3646 REMARK 3 14 2.3800 - 2.3200 0.99 1373 137 0.3068 0.3178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.301 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3094 REMARK 3 ANGLE : 1.402 4263 REMARK 3 CHIRALITY : 0.082 468 REMARK 3 PLANARITY : 0.013 474 REMARK 3 DIHEDRAL : 21.345 1198 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -15.2409 -11.7442 15.5043 REMARK 3 T TENSOR REMARK 3 T11: 0.3829 T22: 0.3920 REMARK 3 T33: 0.3462 T12: 0.0067 REMARK 3 T13: -0.0176 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.4785 L22: 0.9493 REMARK 3 L33: 0.3051 L12: 0.1781 REMARK 3 L13: -0.5619 L23: -0.0840 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: -0.2418 S13: 0.0770 REMARK 3 S21: 0.1252 S22: 0.0210 S23: -0.0094 REMARK 3 S31: 0.0173 S32: 0.1173 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980112 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADDREF REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 46.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM BICINE PH 7,5, 300 MM NA-K REMARK 280 TARTRATE, 22,5% PEG SMEAR HIGH, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.14000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.14000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 241 REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 255 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LEU A 317 CG CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 TRP A 570 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 570 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA F 8 O3' DA F 8 C3' -0.059 REMARK 500 DG H 1 P DG H 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 283 CG1 - CB - CG2 ANGL. DEV. = -19.8 DEGREES REMARK 500 PHE A 289 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 MET A 309 CG - SD - CE ANGL. DEV. = 12.3 DEGREES REMARK 500 PHE A 406 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG F 2 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC F 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC F 9 C5' - C4' - O4' ANGL. DEV. = 7.0 DEGREES REMARK 500 DC F 9 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG F 11 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 436 -39.23 -37.92 REMARK 500 ARG A 438 -29.00 -140.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 251 0.07 SIDE CHAIN REMARK 500 ARG A 563 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 915 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 916 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 917 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 918 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 919 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A 920 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A 921 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH F 248 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH F 249 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH G 123 DISTANCE = 8.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 102.1 REMARK 620 3 ILE A 305 O 80.0 83.0 REMARK 620 4 DC H 3 OP1 151.3 93.2 77.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 ILE A 341 O 103.1 REMARK 620 3 ALA A 344 O 93.8 89.2 REMARK 620 4 HOH A 842 O 89.0 94.7 174.6 REMARK 620 5 DA G 5 OP1 162.1 94.5 89.7 86.2 REMARK 620 6 HOH G 103 O 76.3 170.6 81.5 94.7 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 98.0 REMARK 620 3 TTP A 604 O1A 85.3 89.5 REMARK 620 4 TTP A 604 O1B 161.4 93.4 80.1 REMARK 620 5 TTP A 604 O3G 87.8 173.9 89.3 80.5 REMARK 620 6 HOH A 730 O 111.5 94.6 161.8 81.9 84.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7M43 RELATED DB: PDB DBREF 9EWB A 242 462 UNP Q9UGP5 DPOLL_HUMAN 242 462 DBREF 9EWB A 467 570 UNP Q9UGP5 DPOLL_HUMAN 472 575 DBREF 9EWB F 1 11 PDB 9EWB 9EWB 1 11 DBREF 9EWB G 1 6 PDB 9EWB 9EWB 1 6 DBREF 9EWB H 1 4 PDB 9EWB 9EWB 1 4 SEQADV 9EWB GLY A 241 UNP Q9UGP5 EXPRESSION TAG SEQADV 9EWB LYS A 463 UNP Q9UGP5 LINKER SEQADV 9EWB GLY A 464 UNP Q9UGP5 LINKER SEQADV 9EWB GLU A 465 UNP Q9UGP5 LINKER SEQADV 9EWB THR A 466 UNP Q9UGP5 LINKER SEQADV 9EWB ARG A 487 UNP Q9UGP5 ILE 492 ENGINEERED MUTATION SEQADV 9EWB ALA A 538 UNP Q9UGP5 CYS 543 CONFLICT SEQRES 1 A 330 GLY ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 A 330 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 A 330 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 A 330 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 A 330 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 A 330 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 A 330 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 A 330 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 A 330 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 A 330 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 A 330 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 A 330 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 A 330 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 A 330 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 A 330 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 A 330 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 A 330 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 A 330 VAL LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU SEQRES 19 A 330 PRO GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ARG SEQRES 20 A 330 VAL VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR SEQRES 21 A 330 PHE THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA SEQRES 22 A 330 LEU ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA SEQRES 23 A 330 LEU SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS SEQRES 24 A 330 VAL GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS SEQRES 25 A 330 ASP VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO SEQRES 26 A 330 ALA GLU ARG ASP TRP SEQRES 1 F 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 G 6 DC DA DG DT DA DC SEQRES 1 H 4 DG DC DC DG HET CA A 601 1 HET NA A 602 1 HET NA A 603 1 HET TTP A 604 41 HET EDO A 605 10 HET EDO A 606 10 HET EDO A 607 10 HET EDO A 608 10 HET EDO A 609 10 HET EDO A 610 10 HET EDO F 101 10 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 CA CA 2+ FORMUL 6 NA 2(NA 1+) FORMUL 8 TTP C10 H17 N2 O14 P3 FORMUL 9 EDO 7(C2 H6 O2) FORMUL 16 HOH *300(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 SER A 288 1 17 HELIX 3 AA3 SER A 295 SER A 301 1 7 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 GLN A 404 1 16 HELIX 12 AB3 ARG A 438 ARG A 441 5 4 HELIX 13 AB4 GLY A 442 GLU A 454 1 13 HELIX 14 AB5 PRO A 490 SER A 492 5 3 HELIX 15 AB6 GLU A 493 GLY A 503 1 11 HELIX 16 AB7 SER A 504 LYS A 518 1 15 HELIX 17 AB8 THR A 550 LEU A 558 1 9 HELIX 18 AB9 GLU A 564 ARG A 568 5 5 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 482 VAL A 488 1 O ASP A 485 N VAL A 430 SHEET 4 AA2 5 LYS A 467 CYS A 472 -1 N CYS A 472 O ARG A 482 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N LEU A 461 O LEU A 469 SHEET 1 AA3 3 MET A 520 LEU A 522 0 SHEET 2 AA3 3 LEU A 527 THR A 529 -1 O SER A 528 N SER A 521 SHEET 3 AA3 3 ARG A 544 LEU A 546 -1 O LEU A 546 N LEU A 527 SHEET 1 AA4 2 VAL A 532 ARG A 533 0 SHEET 2 AA4 2 LYS A 539 GLY A 541 -1 O GLY A 541 N VAL A 532 LINK O CYS A 300 NA NA A 603 1555 1555 2.58 LINK O ILE A 302 NA NA A 603 1555 1555 2.35 LINK O ILE A 305 NA NA A 603 1555 1555 3.04 LINK O SER A 339 NA NA A 602 1555 1555 2.32 LINK O ILE A 341 NA NA A 602 1555 1555 2.38 LINK O ALA A 344 NA NA A 602 1555 1555 2.18 LINK OD1 ASP A 427 CA CA A 601 1555 1555 2.15 LINK OD2 ASP A 429 CA CA A 601 1555 1555 2.28 LINK CA CA A 601 O1A TTP A 604 1555 1555 2.28 LINK CA CA A 601 O1B TTP A 604 1555 1555 2.38 LINK CA CA A 601 O3G TTP A 604 1555 1555 2.47 LINK CA CA A 601 O HOH A 730 1555 1555 2.67 LINK NA NA A 602 O HOH A 842 1555 1555 2.32 LINK NA NA A 602 OP1 DA G 5 1555 1555 2.52 LINK NA NA A 602 O HOH G 103 1555 1555 2.92 LINK NA NA A 603 OP1 DC H 3 1555 1555 3.17 CISPEP 1 GLY A 503 SER A 504 0 5.40 CRYST1 56.280 62.510 140.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007132 0.00000 CONECT 758 5671 CONECT 780 5671 CONECT 820 5671 CONECT 1356 5670 CONECT 1381 5670 CONECT 1431 5670 CONECT 2728 5669 CONECT 2757 5669 CONECT 5479 5670 CONECT 5606 5671 CONECT 5669 2728 2757 5673 5677 CONECT 5669 5683 5812 CONECT 5670 1356 1381 1431 5479 CONECT 5670 5924 6055 CONECT 5671 758 780 820 5606 CONECT 5672 5673 5674 5675 5684 CONECT 5673 5669 5672 CONECT 5674 5672 CONECT 5675 5672 5676 CONECT 5676 5675 5677 5678 5679 CONECT 5677 5669 5676 CONECT 5678 5676 CONECT 5679 5676 5680 CONECT 5680 5679 5681 5682 5683 CONECT 5681 5680 CONECT 5682 5680 CONECT 5683 5669 5680 CONECT 5684 5672 5685 CONECT 5685 5684 5686 5701 5702 CONECT 5686 5685 5687 5688 5703 CONECT 5687 5686 5691 CONECT 5688 5686 5689 5690 5704 CONECT 5689 5688 5705 CONECT 5690 5688 5691 5706 5707 CONECT 5691 5687 5690 5692 5708 CONECT 5692 5691 5693 5700 CONECT 5693 5692 5694 5695 CONECT 5694 5693 CONECT 5695 5693 5696 CONECT 5696 5695 5697 5698 CONECT 5697 5696 CONECT 5698 5696 5699 5700 CONECT 5699 5698 5709 5710 5711 CONECT 5700 5692 5698 5712 CONECT 5701 5685 CONECT 5702 5685 CONECT 5703 5686 CONECT 5704 5688 CONECT 5705 5689 CONECT 5706 5690 CONECT 5707 5690 CONECT 5708 5691 CONECT 5709 5699 CONECT 5710 5699 CONECT 5711 5699 CONECT 5712 5700 CONECT 5713 5714 5715 5717 5718 CONECT 5714 5713 5719 CONECT 5715 5713 5716 5720 5721 CONECT 5716 5715 5722 CONECT 5717 5713 CONECT 5718 5713 CONECT 5719 5714 CONECT 5720 5715 CONECT 5721 5715 CONECT 5722 5716 CONECT 5723 5724 5725 5727 5728 CONECT 5724 5723 5729 CONECT 5725 5723 5726 5730 5731 CONECT 5726 5725 5732 CONECT 5727 5723 CONECT 5728 5723 CONECT 5729 5724 CONECT 5730 5725 CONECT 5731 5725 CONECT 5732 5726 CONECT 5733 5734 5735 5737 5738 CONECT 5734 5733 5739 CONECT 5735 5733 5736 5740 5741 CONECT 5736 5735 5742 CONECT 5737 5733 CONECT 5738 5733 CONECT 5739 5734 CONECT 5740 5735 CONECT 5741 5735 CONECT 5742 5736 CONECT 5743 5744 5745 5747 5748 CONECT 5744 5743 5749 CONECT 5745 5743 5746 5750 5751 CONECT 5746 5745 5752 CONECT 5747 5743 CONECT 5748 5743 CONECT 5749 5744 CONECT 5750 5745 CONECT 5751 5745 CONECT 5752 5746 CONECT 5753 5754 5755 5757 5758 CONECT 5754 5753 5759 CONECT 5755 5753 5756 5760 5761 CONECT 5756 5755 5762 CONECT 5757 5753 CONECT 5758 5753 CONECT 5759 5754 CONECT 5760 5755 CONECT 5761 5755 CONECT 5762 5756 CONECT 5763 5764 5765 5767 5768 CONECT 5764 5763 5769 CONECT 5765 5763 5766 5770 5771 CONECT 5766 5765 5772 CONECT 5767 5763 CONECT 5768 5763 CONECT 5769 5764 CONECT 5770 5765 CONECT 5771 5765 CONECT 5772 5766 CONECT 5773 5774 5775 5777 5778 CONECT 5774 5773 5779 CONECT 5775 5773 5776 5780 5781 CONECT 5776 5775 5782 CONECT 5777 5773 CONECT 5778 5773 CONECT 5779 5774 CONECT 5780 5775 CONECT 5781 5775 CONECT 5782 5776 CONECT 5812 5669 CONECT 5924 5670 CONECT 6055 5670 MASTER 391 0 11 18 12 0 0 6 3268 4 129 29 END