HEADER NUCLEAR PROTEIN 03-APR-24 9EWG TITLE DNA POLYMERASE LAMBDA I493K, TTP:AT CA2+ GROUND STATE TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA PRIMER STRAND DOWNSTREAM; COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA PRIMER STRAND UPSTREAM; COMPND 14 CHAIN: P; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA TEMPLATE STRAND; COMPND 18 CHAIN: T; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS DNA POLYMERASE GAP FILLING, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.NOURISSON,A.HAOUZ,S.MISSOURY,M.DELARUE REVDAT 2 10-SEP-25 9EWG 1 JRNL REVDAT 1 23-JUL-25 9EWG 0 JRNL AUTH A.NOURISSON,S.MISSOURY,S.LUCAS-STAAT,A.HAOUZ,M.DELARUE JRNL TITL FIDELITY, SPECIALIZATION, AND EVOLUTION OF PARAMECIUM POLX JRNL TITL 2 DNA POLYMERASES INVOLVED IN PROGRAMMED DOUBLE-STRAND BREAK JRNL TITL 3 DNA REPAIR. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 40829804 JRNL DOI 10.1093/NAR/GKAF786 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.2 REMARK 3 NUMBER OF REFLECTIONS : 25166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.7000 - 4.8200 1.00 2434 208 0.2112 0.2690 REMARK 3 2 4.8200 - 3.8300 1.00 2313 197 0.1595 0.1794 REMARK 3 3 3.8300 - 3.3400 1.00 2292 196 0.1719 0.2423 REMARK 3 4 3.3400 - 3.0400 1.00 2277 193 0.1973 0.2568 REMARK 3 5 3.0400 - 2.8200 1.00 2240 191 0.2248 0.2544 REMARK 3 6 2.8200 - 2.6500 1.00 2257 192 0.2446 0.3045 REMARK 3 7 2.6500 - 2.5200 0.93 2094 179 0.2490 0.2809 REMARK 3 8 2.5200 - 2.4100 0.81 1796 154 0.2522 0.3187 REMARK 3 9 2.4100 - 2.3200 0.68 1522 129 0.2680 0.2597 REMARK 3 10 2.3200 - 2.2400 0.59 1319 112 0.2572 0.2976 REMARK 3 11 2.2400 - 2.1700 0.49 1101 95 0.2527 0.3239 REMARK 3 12 2.1700 - 2.1100 0.34 747 63 0.2552 0.2931 REMARK 3 13 2.1100 - 2.0500 0.22 476 41 0.2458 0.3229 REMARK 3 14 2.0500 - 2.0000 0.14 320 28 0.2815 0.3782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.243 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3001 REMARK 3 ANGLE : 0.733 4141 REMARK 3 CHIRALITY : 0.049 458 REMARK 3 PLANARITY : 0.006 457 REMARK 3 DIHEDRAL : 21.086 1154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -15.2609 -12.0401 15.2886 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.2080 REMARK 3 T33: 0.1335 T12: 0.0426 REMARK 3 T13: -0.0293 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 3.0280 L22: 1.9716 REMARK 3 L33: 1.9768 L12: -0.0008 REMARK 3 L13: -1.3356 L23: 0.3677 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.4421 S13: 0.2082 REMARK 3 S21: 0.3126 S22: 0.1557 S23: -0.0327 REMARK 3 S31: 0.0315 S32: 0.2173 S33: -0.0927 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9EWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.916 REMARK 200 RESOLUTION RANGE LOW (A) : 70.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM BICINE PH7.5 300 MM NA-K REMARK 280 TARTRATE 17.5% PEG 20K 10 MM PRASEODYME ACETATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.02100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.25200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.02100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.25200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 241 REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 465 HIS A 541 REMARK 465 GLY A 542 REMARK 465 CYS A 543 REMARK 465 LYS A 544 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CB CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 THR A 294 OG1 CG2 REMARK 470 GLN A 297 CB CG CD OE1 NE2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLY A 416 O REMARK 470 ARG A 438 CB CG CD NE CZ NH1 NH2 REMARK 470 HIS A 440 O REMARK 470 ARG A 441 CB CG CD NE CZ NH1 NH2 REMARK 470 GLY A 442 O REMARK 470 ILE A 443 O REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 ASN A 539 CG OD1 ND2 REMARK 470 THR A 540 OG1 CG2 REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS A 557 CG CD CE NZ REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC T 9 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 407 104.67 -167.45 REMARK 500 CYS A 415 -144.00 -107.02 REMARK 500 ARG A 438 53.29 -143.93 REMARK 500 HIS A 440 31.03 -81.59 REMARK 500 ASN A 539 152.69 172.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 873 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 874 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A 876 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A 878 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A 879 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH A 880 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A 881 DISTANCE = 9.16 ANGSTROMS REMARK 525 HOH A 882 DISTANCE = 10.35 ANGSTROMS REMARK 525 HOH A 883 DISTANCE = 12.18 ANGSTROMS REMARK 525 HOH T 137 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 302 O REMARK 620 2 ILE A 305 O 75.0 REMARK 620 3 HOH A 775 O 139.2 64.8 REMARK 620 4 DC D 3 OP1 97.8 79.9 82.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 ILE A 341 O 104.4 REMARK 620 3 ALA A 344 O 92.2 87.9 REMARK 620 4 HOH A 806 O 88.4 100.4 171.3 REMARK 620 5 DA P 5 OP1 155.6 100.0 87.2 88.7 REMARK 620 6 HOH P 208 O 71.8 176.1 93.0 78.9 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 490 OD2 138.1 REMARK 620 3 HOH A 763 O 67.4 71.6 REMARK 620 4 TMP P 101 O3P 51.3 169.9 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 607 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 733 O REMARK 620 2 HOH A 809 O 100.9 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9EWB RELATED DB: PDB REMARK 900 RELATED ID: 9EWC RELATED DB: PDB REMARK 900 RELATED ID: 9EWD RELATED DB: PDB REMARK 900 RELATED ID: 9EWE RELATED DB: PDB DBREF 9EWG A 242 462 UNP Q9UGP5 DPOLL_HUMAN 242 462 DBREF 9EWG A 472 575 UNP Q9UGP5 DPOLL_HUMAN 472 575 DBREF 9EWG D 1 4 PDB 9EWG 9EWG 1 4 DBREF 9EWG P 1 6 PDB 9EWG 9EWG 1 6 DBREF 9EWG T 1 11 PDB 9EWG 9EWG 1 11 SEQADV 9EWG GLY A 241 UNP Q9UGP5 EXPRESSION TAG SEQADV 9EWG LYS A 463 UNP Q9UGP5 LINKER SEQADV 9EWG GLY A 464 UNP Q9UGP5 LINKER SEQADV 9EWG GLU A 470 UNP Q9UGP5 LINKER SEQADV 9EWG THR A 471 UNP Q9UGP5 LINKER SEQADV 9EWG LYS A 492 UNP Q9UGP5 ILE 492 ENGINEERED MUTATION SEQRES 1 A 330 GLY ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 A 330 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 A 330 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 A 330 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 A 330 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 A 330 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 A 330 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 A 330 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 A 330 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 A 330 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 A 330 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 A 330 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 A 330 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 A 330 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 A 330 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 A 330 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 A 330 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 A 330 VAL LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU SEQRES 19 A 330 PRO GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE LYS SEQRES 20 A 330 VAL VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR SEQRES 21 A 330 PHE THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA SEQRES 22 A 330 LEU ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA SEQRES 23 A 330 LEU SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS LYS SEQRES 24 A 330 VAL GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS SEQRES 25 A 330 ASP VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO SEQRES 26 A 330 ALA GLU ARG ASP TRP SEQRES 1 D 4 DG DC DC DG SEQRES 1 P 6 DC DA DG DT DA DC SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG HET NA A 601 1 HET NA A 602 1 HET NA A 603 1 HET EDO A 604 10 HET EDO A 605 10 HET EDO A 606 10 HET CA A 607 1 HET EDO A 608 10 HET GOL A 609 14 HET CA D 101 1 HET TMP P 101 34 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM TMP THYMIDINE-5'-PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NA 3(NA 1+) FORMUL 8 EDO 4(C2 H6 O2) FORMUL 11 CA 2(CA 2+) FORMUL 13 GOL C3 H8 O3 FORMUL 15 TMP C10 H15 N2 O8 P FORMUL 16 HOH *248(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 PHE A 289 1 18 HELIX 3 AA3 SER A 295 SER A 301 1 7 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 GLU A 385 1 7 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 PHE A 444 GLU A 454 1 11 HELIX 13 AB4 PRO A 495 SER A 497 5 3 HELIX 14 AB5 GLU A 498 GLY A 508 1 11 HELIX 15 AB6 SER A 509 LYS A 523 1 15 HELIX 16 AB7 THR A 555 GLY A 564 1 10 HELIX 17 AB8 GLU A 569 ARG A 573 5 5 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N THR A 458 O VAL A 476 SHEET 1 AA3 3 SER A 526 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 VAL A 550 -1 O ARG A 549 N THR A 534 LINK O ILE A 302 NA NA A 602 1555 1555 2.06 LINK O ILE A 305 NA NA A 602 1555 1555 3.07 LINK O SER A 339 NA NA A 603 1555 1555 2.34 LINK O ILE A 341 NA NA A 603 1555 1555 2.31 LINK O ALA A 344 NA NA A 603 1555 1555 2.32 LINK OD1 ASP A 427 NA NA A 601 1555 1555 2.94 LINK OD2 ASP A 490 NA NA A 601 1555 1555 2.25 LINK NA NA A 601 O HOH A 763 1555 1555 2.51 LINK NA NA A 601 O3P TMP P 101 1555 1555 2.49 LINK NA NA A 602 O HOH A 775 1555 1555 1.94 LINK NA NA A 602 OP1 DC D 3 1555 1555 2.99 LINK NA NA A 603 O HOH A 806 1555 1555 2.24 LINK NA NA A 603 OP1 DA P 5 1555 1555 2.39 LINK NA NA A 603 O HOH P 208 1555 1555 2.56 LINK CA CA A 607 O HOH A 733 1555 1555 3.16 LINK CA CA A 607 O HOH A 809 1555 1555 2.66 LINK OP2 DC D 2 CA CA D 101 1555 1555 2.66 CISPEP 1 GLY A 508 SER A 509 0 -0.95 CRYST1 56.042 62.504 141.400 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017844 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007072 0.00000 CONECT 743 5495 CONECT 783 5495 CONECT 1318 5496 CONECT 1343 5496 CONECT 1393 5496 CONECT 2671 5494 CONECT 3569 5494 CONECT 4862 5552 CONECT 4891 5495 CONECT 5081 5496 CONECT 5494 2671 3569 5556 5649 CONECT 5495 743 783 4891 5661 CONECT 5496 1318 1343 1393 5081 CONECT 5496 5692 5779 CONECT 5497 5498 5499 5501 5502 CONECT 5498 5497 5503 CONECT 5499 5497 5500 5504 5505 CONECT 5500 5499 5506 CONECT 5501 5497 CONECT 5502 5497 CONECT 5503 5498 CONECT 5504 5499 CONECT 5505 5499 CONECT 5506 5500 CONECT 5507 5508 5509 5511 5512 CONECT 5508 5507 5513 CONECT 5509 5507 5510 5514 5515 CONECT 5510 5509 5516 CONECT 5511 5507 CONECT 5512 5507 CONECT 5513 5508 CONECT 5514 5509 CONECT 5515 5509 CONECT 5516 5510 CONECT 5517 5518 5519 5521 5522 CONECT 5518 5517 5523 CONECT 5519 5517 5520 5524 5525 CONECT 5520 5519 5526 CONECT 5521 5517 CONECT 5522 5517 CONECT 5523 5518 CONECT 5524 5519 CONECT 5525 5519 CONECT 5526 5520 CONECT 5527 5619 5695 CONECT 5528 5529 5530 5532 5533 CONECT 5529 5528 5534 CONECT 5530 5528 5531 5535 5536 CONECT 5531 5530 5537 CONECT 5532 5528 CONECT 5533 5528 CONECT 5534 5529 CONECT 5535 5530 CONECT 5536 5530 CONECT 5537 5531 CONECT 5538 5539 5540 5544 5545 CONECT 5539 5538 5546 CONECT 5540 5538 5541 5542 5547 CONECT 5541 5540 5548 CONECT 5542 5540 5543 5549 5550 CONECT 5543 5542 5551 CONECT 5544 5538 CONECT 5545 5538 CONECT 5546 5539 CONECT 5547 5540 CONECT 5548 5541 CONECT 5549 5542 CONECT 5550 5542 CONECT 5551 5543 CONECT 5552 4862 CONECT 5553 5554 5555 5556 5557 CONECT 5554 5553 CONECT 5555 5553 CONECT 5556 5494 5553 CONECT 5557 5553 5558 CONECT 5558 5557 5559 5574 5575 CONECT 5559 5558 5560 5561 5576 CONECT 5560 5559 5564 CONECT 5561 5559 5562 5563 5577 CONECT 5562 5561 5578 CONECT 5563 5561 5564 5579 5580 CONECT 5564 5560 5563 5565 5581 CONECT 5565 5564 5566 5573 CONECT 5566 5565 5567 5568 CONECT 5567 5566 CONECT 5568 5566 5569 5582 CONECT 5569 5568 5570 5571 CONECT 5570 5569 CONECT 5571 5569 5572 5573 CONECT 5572 5571 5583 5584 5585 CONECT 5573 5565 5571 5586 CONECT 5574 5558 CONECT 5575 5558 CONECT 5576 5559 CONECT 5577 5561 CONECT 5578 5562 CONECT 5579 5563 CONECT 5580 5563 CONECT 5581 5564 CONECT 5582 5568 CONECT 5583 5572 CONECT 5584 5572 CONECT 5585 5572 CONECT 5586 5573 CONECT 5619 5527 CONECT 5649 5494 CONECT 5661 5495 CONECT 5692 5496 CONECT 5695 5527 CONECT 5779 5496 MASTER 402 0 11 17 10 0 0 6 3131 4 110 29 END