HEADER METAL BINDING PROTEIN 09-APR-24 9EY6 TITLE CRYSTAL STRUCTURE OF HUMAN TYROSINASE-RELATED PROTEIN 1 (TYRP1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5,6-DIHYDROXYINDOLE-2-CARBOXYLIC ACID OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHICA OXIDASE,CATALASE B,GLYCOPROTEIN 75,MELANOMA ANTIGEN COMPND 5 GP75,TYROSINASE-RELATED PROTEIN 1,TRP,TRP-1,TRP1; COMPND 6 EC: 1.14.18.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYRP1, CAS2, TYRP, TYRRP; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 9 EXPRESSION_SYSTEM_CELL: INSECT CELL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: INSECT EXPRESSION; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PACEBAC1 KEYWDS MELANOGENESIS, HUMAN TYROSINASE, TYROSINASE INHIBITOR, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.M.NG,M.SOLER-LOPEZ REVDAT 3 09-OCT-24 9EY6 1 REMARK REVDAT 2 03-JUL-24 9EY6 1 JRNL REVDAT 1 22-MAY-24 9EY6 0 JRNL AUTH C.FAURE,Y.MIN NG,C.BELLE,M.SOLER-LOPEZ,L.KHETTABI,M.SAIDI, JRNL AUTH 2 N.BERTHET,M.MARESCA,C.PHILOUZE,W.RACHIDI,M.REGLIER, JRNL AUTH 3 A.DU MOULINET D'HARDEMARE,H.JAMET JRNL TITL INTERACTIONS OF PHENYLALANINE DERIVATIVES WITH HUMAN JRNL TITL 2 TYROSINASE: LESSONS FROM EXPERIMENTAL AND THEORETICAL JRNL TITL 3 TUDIES. JRNL REF CHEMBIOCHEM V. 25 00235 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 38642076 JRNL DOI 10.1002/CBIC.202400235 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 42682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.939 REMARK 3 FREE R VALUE TEST SET COUNT : 2108 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2287 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3571 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 279 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69800 REMARK 3 B22 (A**2) : 0.69800 REMARK 3 B33 (A**2) : -2.26500 REMARK 3 B12 (A**2) : 0.34900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4017 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3507 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5504 ; 1.868 ; 1.841 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8125 ; 0.662 ; 1.754 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 6.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ; 9.925 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;14.569 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.186 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4672 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 974 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 774 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 40 ; 0.219 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1984 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.218 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.287 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.118 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1796 ; 4.791 ; 5.024 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1796 ; 4.789 ; 5.024 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2246 ; 6.899 ; 9.034 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2247 ; 6.898 ; 9.039 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2221 ; 6.783 ; 6.028 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2222 ; 6.783 ; 6.029 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3256 ; 9.837 ;10.842 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3257 ; 9.835 ;10.842 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9EY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.227 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11360 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 1.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, ZINC CHLORIDE, TRIS-HCL PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.99200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.99600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.99600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.99200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 507 O HOH A 716 1.64 REMARK 500 N GLY A 309 O HOH A 601 1.77 REMARK 500 O ASP A 308 O HOH A 602 1.97 REMARK 500 OD1 ASP A 123 O HOH A 603 2.18 REMARK 500 O HOH A 605 O HOH A 770 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 82 OE2 GLU A 140 6444 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 91 N - CA - CB ANGL. DEV. = -8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 56.72 -90.39 REMARK 500 LEU A 45 -64.14 -96.59 REMARK 500 SER A 106 -173.13 -170.24 REMARK 500 THR A 112 -158.39 -129.60 REMARK 500 LEU A 265 -112.54 -122.46 REMARK 500 SER A 292 60.78 -107.17 REMARK 500 CYS A 303 128.78 -38.38 REMARK 500 ASP A 308 97.70 -165.56 REMARK 500 ASN A 314 70.17 -158.31 REMARK 500 PRO A 346 35.28 -86.54 REMARK 500 ASP A 370 119.69 -176.58 REMARK 500 LEU A 376 -112.82 37.66 REMARK 500 PRO A 442 54.84 -106.44 REMARK 500 SER A 470 79.84 -100.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 93 0.10 SIDE CHAIN REMARK 500 ARG A 146 0.09 SIDE CHAIN REMARK 500 ARG A 230 0.10 SIDE CHAIN REMARK 500 ARG A 326 0.10 SIDE CHAIN REMARK 500 ARG A 374 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 509 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 66 OE2 REMARK 620 2 HIS A 100 ND1 110.7 REMARK 620 3 GLU A 329 OE1 121.4 11.2 REMARK 620 4 GLU A 329 OE2 119.9 9.3 2.3 REMARK 620 5 HOH A 619 O 118.5 8.9 3.2 3.2 REMARK 620 6 HOH A 632 O 122.4 11.8 1.5 2.6 4.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 75 NE2 REMARK 620 2 HIS A 81 NE2 113.4 REMARK 620 3 GLU A 88 OE1 93.0 150.9 REMARK 620 4 GLU A 88 OE2 135.1 91.0 60.6 REMARK 620 5 GLU A 139 OE1 71.9 136.0 39.8 64.8 REMARK 620 6 GLU A 139 OE2 74.3 135.4 38.7 62.5 2.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 HIS A 215 NE2 100.6 REMARK 620 3 HIS A 224 NE2 112.2 102.8 REMARK 620 4 HOH A 716 O 117.4 111.0 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 510 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 241 OE1 REMARK 620 2 GLU A 241 OE2 63.5 REMARK 620 3 HOH A 605 O 95.5 127.6 REMARK 620 4 HOH A 615 O 122.9 77.2 141.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 377 NE2 REMARK 620 2 HIS A 381 NE2 97.1 REMARK 620 3 HIS A 404 NE2 101.2 122.6 REMARK 620 N 1 2 DBREF 9EY6 A 25 471 UNP P17643 TYRP1_HUMAN 25 471 SEQRES 1 A 447 GLN PHE PRO ARG GLN CYS ALA THR VAL GLU ALA LEU ARG SEQRES 2 A 447 SER GLY MET CYS CYS PRO ASP LEU SER PRO VAL SER GLY SEQRES 3 A 447 PRO GLY THR ASP ARG CYS GLY SER SER SER GLY ARG GLY SEQRES 4 A 447 ARG CYS GLU ALA VAL THR ALA ASP SER ARG PRO HIS SER SEQRES 5 A 447 PRO GLN TYR PRO HIS ASP GLY ARG ASP ASP ARG GLU VAL SEQRES 6 A 447 TRP PRO LEU ARG PHE PHE ASN ARG THR CYS HIS CYS ASN SEQRES 7 A 447 GLY ASN PHE SER GLY HIS ASN CYS GLY THR CYS ARG PRO SEQRES 8 A 447 GLY TRP ARG GLY ALA ALA CYS ASP GLN ARG VAL LEU ILE SEQRES 9 A 447 VAL ARG ARG ASN LEU LEU ASP LEU SER LYS GLU GLU LYS SEQRES 10 A 447 ASN HIS PHE VAL ARG ALA LEU ASP MET ALA LYS ARG THR SEQRES 11 A 447 THR HIS PRO LEU PHE VAL ILE ALA THR ARG ARG SER GLU SEQRES 12 A 447 GLU ILE LEU GLY PRO ASP GLY ASN THR PRO GLN PHE GLU SEQRES 13 A 447 ASN ILE SER ILE TYR ASN TYR PHE VAL TRP THR HIS TYR SEQRES 14 A 447 TYR SER VAL LYS LYS THR PHE LEU GLY VAL GLY GLN GLU SEQRES 15 A 447 SER PHE GLY GLU VAL ASP PHE SER HIS GLU GLY PRO ALA SEQRES 16 A 447 PHE LEU THR TRP HIS ARG TYR HIS LEU LEU ARG LEU GLU SEQRES 17 A 447 LYS ASP MET GLN GLU MET LEU GLN GLU PRO SER PHE SER SEQRES 18 A 447 LEU PRO TYR TRP ASN PHE ALA THR GLY LYS ASN VAL CYS SEQRES 19 A 447 ASP ILE CYS THR ASP ASP LEU MET GLY SER ARG SER ASN SEQRES 20 A 447 PHE ASP SER THR LEU ILE SER PRO ASN SER VAL PHE SER SEQRES 21 A 447 GLN TRP ARG VAL VAL CYS ASP SER LEU GLU ASP TYR ASP SEQRES 22 A 447 THR LEU GLY THR LEU CYS ASN SER THR GLU ASP GLY PRO SEQRES 23 A 447 ILE ARG ARG ASN PRO ALA GLY ASN VAL ALA ARG PRO MET SEQRES 24 A 447 VAL GLN ARG LEU PRO GLU PRO GLN ASP VAL ALA GLN CYS SEQRES 25 A 447 LEU GLU VAL GLY LEU PHE ASP THR PRO PRO PHE TYR SER SEQRES 26 A 447 ASN SER THR ASN SER PHE ARG ASN THR VAL GLU GLY TYR SEQRES 27 A 447 SER ASP PRO THR GLY LYS TYR ASP PRO ALA VAL ARG SER SEQRES 28 A 447 LEU HIS ASN LEU ALA HIS LEU PHE LEU ASN GLY THR GLY SEQRES 29 A 447 GLY GLN THR HIS LEU SER PRO ASN ASP PRO ILE PHE VAL SEQRES 30 A 447 LEU LEU HIS THR PHE THR ASP ALA VAL PHE ASP GLU TRP SEQRES 31 A 447 LEU ARG ARG TYR ASN ALA ASP ILE SER THR PHE PRO LEU SEQRES 32 A 447 GLU ASN ALA PRO ILE GLY HIS ASN ARG GLN TYR ASN MET SEQRES 33 A 447 VAL PRO PHE TRP PRO PRO VAL THR ASN THR GLU MET PHE SEQRES 34 A 447 VAL THR ALA PRO ASP ASN LEU GLY TYR THR TYR GLU ILE SEQRES 35 A 447 GLN TRP PRO SER ARG HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET FUC F 6 10 HET NAG A 501 14 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET ZN A 506 1 HET ZN A 507 1 HET ZN A 508 1 HET ZN A 509 1 HET ZN A 510 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 11(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 2 MAN 3(C6 H12 O6) FORMUL 3 FUC 3(C6 H12 O5) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 ZN 5(ZN 2+) FORMUL 17 HOH *182(H2 O) HELIX 1 AA1 GLN A 29 ALA A 31 5 3 HELIX 2 AA2 THR A 32 GLY A 39 1 8 HELIX 3 AA3 ASP A 54 GLY A 61 5 8 HELIX 4 AA4 ASN A 132 LEU A 136 5 5 HELIX 5 AA5 SER A 137 THR A 154 1 18 HELIX 6 AA6 ARG A 165 ILE A 169 5 5 HELIX 7 AA7 SER A 183 LYS A 197 1 15 HELIX 8 AA8 PRO A 218 GLN A 240 1 23 HELIX 9 AA9 SER A 281 TRP A 286 5 6 HELIX 10 AB1 SER A 292 GLY A 300 1 9 HELIX 11 AB2 ARG A 321 GLN A 325 5 5 HELIX 12 AB3 GLU A 329 LEU A 337 1 9 HELIX 13 AB4 SER A 354 GLU A 360 1 7 HELIX 14 AB5 SER A 375 LEU A 384 1 10 HELIX 15 AB6 ASN A 385 GLN A 390 5 6 HELIX 16 AB7 LEU A 393 ASP A 397 5 5 HELIX 17 AB8 PRO A 398 TYR A 418 1 21 HELIX 18 AB9 THR A 448 PHE A 453 1 6 HELIX 19 AC1 THR A 455 LEU A 460 1 6 SHEET 1 AA1 3 PHE A 26 PRO A 27 0 SHEET 2 AA1 3 PHE A 159 ALA A 162 -1 O VAL A 160 N PHE A 26 SHEET 3 AA1 3 PHE A 179 GLU A 180 -1 O GLU A 180 N ILE A 161 SHEET 1 AA2 3 MET A 40 CYS A 41 0 SHEET 2 AA2 3 ARG A 97 CYS A 101 1 O ARG A 97 N CYS A 41 SHEET 3 AA2 3 GLY A 63 ALA A 67 -1 N ARG A 64 O HIS A 100 SHEET 1 AA3 2 PHE A 105 SER A 106 0 SHEET 2 AA3 2 THR A 112 CYS A 113 -1 O THR A 112 N SER A 106 SHEET 1 AA4 2 TRP A 117 ARG A 118 0 SHEET 2 AA4 2 GLN A 124 ARG A 125 -1 O GLN A 124 N ARG A 118 SHEET 1 AA5 2 ILE A 128 ARG A 130 0 SHEET 2 AA5 2 TYR A 462 TYR A 464 1 O THR A 463 N ARG A 130 SSBOND 1 CYS A 30 CYS A 41 1555 1555 2.25 SSBOND 2 CYS A 42 CYS A 65 1555 1555 2.17 SSBOND 3 CYS A 56 CYS A 99 1555 1555 2.13 SSBOND 4 CYS A 101 CYS A 110 1555 1555 2.21 SSBOND 5 CYS A 113 CYS A 122 1555 1555 2.17 SSBOND 6 CYS A 258 CYS A 261 1555 1555 2.31 SSBOND 7 CYS A 290 CYS A 303 1555 1555 2.10 LINK ND2 ASN A 96 C1 NAG F 1 1555 1555 1.48 LINK ND2 ASN A 104 C1 NAG A 501 1555 1555 1.50 LINK ND2 ASN A 181 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN A 304 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN A 350 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 385 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.40 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.40 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.40 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.39 LINK O6 NAG F 1 C1 FUC F 6 1555 1555 1.41 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.40 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.40 LINK O6 BMA F 3 C1 MAN F 5 1555 1555 1.40 LINK OE2 GLU A 66 ZN ZN A 509 1555 2564 2.03 LINK NE2 HIS A 75 ZN ZN A 508 1555 1555 1.94 LINK NE2 HIS A 81 ZN ZN A 508 1555 1555 2.03 LINK OE1 GLU A 88 ZN ZN A 508 1555 1555 2.17 LINK OE2 GLU A 88 ZN ZN A 508 1555 1555 2.06 LINK ND1 HIS A 100 ZN ZN A 509 1555 2564 1.94 LINK OE1 GLU A 139 ZN ZN A 508 1555 6454 2.28 LINK OE2 GLU A 139 ZN ZN A 508 1555 6454 2.63 LINK NE2 HIS A 192 ZN ZN A 506 1555 1555 1.96 LINK NE2 HIS A 215 ZN ZN A 506 1555 1555 2.07 LINK NE2 HIS A 224 ZN ZN A 506 1555 1555 2.08 LINK OE1 GLU A 241 ZN ZN A 510 1555 1555 2.10 LINK OE2 GLU A 241 ZN ZN A 510 1555 1555 2.03 LINK OE1 GLU A 329 ZN ZN A 509 1555 1555 2.17 LINK OE2 GLU A 329 ZN ZN A 509 1555 1555 2.08 LINK NE2 HIS A 377 ZN ZN A 507 1555 1555 2.04 LINK NE2 HIS A 381 ZN ZN A 507 1555 1555 2.07 LINK NE2 HIS A 404 ZN ZN A 507 1555 1555 1.98 LINK ZN ZN A 506 O HOH A 716 1555 1555 2.24 LINK ZN ZN A 509 O HOH A 619 1555 3455 2.31 LINK ZN ZN A 509 O HOH A 632 1555 3455 2.20 LINK ZN ZN A 510 O HOH A 605 1555 1555 2.57 LINK ZN ZN A 510 O HOH A 615 1555 1555 1.89 CISPEP 1 TYR A 79 PRO A 80 0 -6.83 CISPEP 2 TRP A 90 PRO A 91 0 -6.08 CISPEP 3 PRO A 345 PRO A 346 0 -5.23 CISPEP 4 VAL A 441 PRO A 442 0 -7.83 CISPEP 5 TRP A 444 PRO A 445 0 -9.08 CRYST1 103.754 103.754 140.988 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009638 0.005565 0.000000 0.00000 SCALE2 0.000000 0.011129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007093 0.00000